View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5731-Insertion-4 (Length: 450)
Name: NF5731-Insertion-4
Description: NF5731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5731-Insertion-4 |
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Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 8 - 305
Target Start/End: Complemental strand, 107348 - 107051
Alignment:
| Q |
8 |
tgcaggatcaatcaactcagcctgagggtctttgacatcatgatagaagggagatgcagtgtgaaacacaccatgacagccttgaacaacagaatcaaaa |
107 |
Q |
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| T |
107348 |
tgcaggatcaatcaactcagcctgagggtctttgacatgatgatagaagggagatgcagtgtgaaacacaccatgacagccttgaacagcagaatcaaaa |
107249 |
T |
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| Q |
108 |
gctccctgttcaagtagatttgccttaaacagttgtaatctctccttagcaccttcaagcttaaccaagtggttgatcttcttcagatcacctacaggca |
207 |
Q |
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| T |
107248 |
gctccctgttcaagtagatttgccttaaacagttgtaatctctccttagcaccttcaagcttaaccaagtggttgatcttcttcggatcacctacaggca |
107149 |
T |
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| Q |
208 |
gccataataatcaaatcaaacatagggtcaaaacttatgaagcacggacgtagacgcagacacattaactttaaacaatgacttaattaattcagtgt |
305 |
Q |
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| T |
107148 |
gccataataatcaaatcaaacatagggtcaaaacgtatgaagcacgaacatagacacatacacattaactttaaacaatgacttaattaattaagtgt |
107051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 301 - 450
Target Start/End: Complemental strand, 107005 - 106856
Alignment:
| Q |
301 |
agtgtttgtgttataaagatcaaaagagaagagaatgaattacttgggtcgcgagcggtggctttaacagtgtaaccacgatggagaaggtaacgaacga |
400 |
Q |
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| T |
107005 |
agtgtttgtgttataaagatcaaaagagaagagaatgaattacttgggtcgcgaacggtggctttaacagtgtaaccacgatggagaaggtaacgaacga |
106906 |
T |
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| Q |
401 |
gccatgaagctatgtaacctgaagctccagttacacacacaacgttgctg |
450 |
Q |
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| T |
106905 |
gccatgaagctatgtaacctgaagctccagttacacacacaacgttgctg |
106856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 9 - 205
Target Start/End: Complemental strand, 87983 - 87787
Alignment:
| Q |
9 |
gcaggatcaatcaactcagcctgagggtctttgacatcatgatagaagggagatgcagtgtgaaacacaccatgacagccttgaacaacagaatcaaaag |
108 |
Q |
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| T |
87983 |
gcaggatcaatcaattcagcctgaggatccttgacatcatgataaaagggagatgcagtgtgaaagacaccatgacagccttgaacaacagaatcaaagg |
87884 |
T |
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| Q |
109 |
ctccctgttcaagtagatttgccttaaacagttgtaatctctccttagcaccttcaagcttaaccaagtggttgatcttcttcagatcacctacagg |
205 |
Q |
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| || | |||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||| | |||||| ||||| ||||||| |
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| T |
87883 |
caccttcttcaagtagatttgccttgaacagttgcaatctctccttagcaccatcaagcttaaccaagtggtcaaccttcttgggatcatctacagg |
87787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 341 - 443
Target Start/End: Complemental strand, 87595 - 87493
Alignment:
| Q |
341 |
tacttgggtcgcgagcggtggctttaacagtgtaaccacgatggagaaggtaacgaacgagccatgaagctatgtaacctgaagctccagttacacacac |
440 |
Q |
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||||||| |||||| ||||||||||||||||||| |||||||| ||||| | || |||||||||||||| |||||||||||||| ||||| |||||||| |
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| T |
87595 |
tacttggatcgcgaacggtggctttaacagtgtagccacgatgaagaagcaatcggacgagccatgaagcgatgtaacctgaagcgccagtcacacacac |
87496 |
T |
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| Q |
441 |
aac |
443 |
Q |
| |
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||| |
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| T |
87495 |
aac |
87493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 63 - 178
Target Start/End: Complemental strand, 29549082 - 29548967
Alignment:
| Q |
63 |
gcagtgtgaaacacaccatgacagccttgaacaacagaatcaaaagctccctgttcaagtagatttgccttaaacagttgtaatctctccttagcacctt |
162 |
Q |
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| T |
29549082 |
gcagtatgaaagacaccatggcatccttgaataacagaatcaaaggaaccttcttcaagtaaatctgccttaaagagttgcaacctttcctttgcaccat |
29548983 |
T |
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| Q |
163 |
caagcttaaccaagtg |
178 |
Q |
| |
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|||| |||| |||||| |
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| T |
29548982 |
caagtttaagcaagtg |
29548967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 178
Target Start/End: Complemental strand, 25933555 - 25933440
Alignment:
| Q |
63 |
gcagtgtgaaacacaccatgacagccttgaacaacagaatcaaaagctccctgttcaagtagatttgccttaaacagttgtaatctctccttagcacctt |
162 |
Q |
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||||| ||||| ||||||| ||| || | ||||||||| ||||||| || | ||| | |||| ||||||||| ||||| || |||||||| ||||| | |
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| T |
25933555 |
gcagtatgaaagacaccatcacaaccctcaacaacagagtcaaaagaaccttcttccaagagatctgccttaaagagttgcaacctctcctttgcaccat |
25933456 |
T |
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| Q |
163 |
caagcttaaccaagtg |
178 |
Q |
| |
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|||| ||||||||||| |
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| T |
25933455 |
caagtttaaccaagtg |
25933440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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