View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5731-Insertion-5 (Length: 407)

Name: NF5731-Insertion-5
Description: NF5731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5731-Insertion-5
NF5731-Insertion-5
[»] chr5 (4 HSPs)
chr5 (8-394)||(16913353-16913739)
chr5 (8-84)||(16909955-16910034)
chr5 (89-121)||(39933457-39933489)
chr5 (89-128)||(39933561-39933600)
[»] chr3 (3 HSPs)
chr3 (89-125)||(35653141-35653177)
chr3 (89-128)||(36502369-36502408)
chr3 (89-121)||(36496999-36497031)
[»] chr1 (2 HSPs)
chr1 (93-128)||(15248900-15248935)
chr1 (89-128)||(51184538-51184577)
[»] chr7 (2 HSPs)
chr7 (89-134)||(13784888-13784933)
chr7 (89-134)||(23902778-23902823)
[»] scaffold0025 (1 HSPs)
scaffold0025 (89-121)||(150371-150403)
[»] chr4 (1 HSPs)
chr4 (96-132)||(22405800-22405836)


Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 8 - 394
Target Start/End: Original strand, 16913353 - 16913739
Alignment:
Q  8 gcctctattgtgcatgcgataataaaattgaatggtttatatgattggtcttccatttgtccagagaagcaagcaatattatattgtgagagatgagagg 107  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||    
T  16913353 gcctctattgtgcatgggataataaaattgaatggtttatatgattggtcttccacttgtccagagaagcaagcaatattatattgtgagagatgagggg 16913452  T
Q  108 gttaaatcataaccattggataaatttgtaccatggtgttaagtttttaaaattgcagcgtcacattttcatctattcagtcttcagccattttagtctt 207  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16913453 gttaaatcataaccattggataaatttttaccatggtgttaagtttttaaaattgcagcgtcacattttcatctattcagtcttcagccattttagtctt 16913552  T
Q  208 ctcttgctatgttattgtatgcaactgttccnnnnnnnnncattccaatttgaatttttagatctggggcaaggcannnnnnnnnatcaactctaatttt 307  Q
    |||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||         |||||||||||||||    
T  16913553 ctcttgctatgttattgtatgcaactgttcctttttttttcattccaatttgaatttttagatctggggcaaggcatttttttttatcaactctaatttt 16913652  T
Q  308 tagtttaccnnnnnnnnctctaattttttataaacaaataattccagcattataatcaacccacaagcgagaaattgcagtaattga 394  Q
    ||||||||         ||| ||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  16913653 tagtttactaaaaaaaactccaattttttataaacaaagaattccagcattagaatcaacccacgagcgagaaattgcagtaattga 16913739  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 84
Target Start/End: Original strand, 16909955 - 16910034
Alignment:
Q  8 gcctctattgtgcatgcgataataaaattgaatggtttatat--gattggtcttccatttgtcca-gagaagcaagcaat 84  Q
    ||||||| | |||||| ||| |||||||||||||||||||||  ||||||||||||| ||||| | ||||||||| ||||    
T  16909955 gcctctactctgcatgggatcataaaattgaatggtttatatgagattggtcttccacttgtcaaggagaagcaaacaat 16910034  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 121
Target Start/End: Original strand, 39933457 - 39933489
Alignment:
Q  89 tattgtgagagatgagagggttaaatcataacc 121  Q
    |||||||||||||||||||||||||||||||||    
T  39933457 tattgtgagagatgagagggttaaatcataacc 39933489  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 89 - 128
Target Start/End: Complemental strand, 39933600 - 39933561
Alignment:
Q  89 tattgtgagagatgagagggttaaatcataaccattggat 128  Q
    ||||||||||||| ||||||||||||||||||| ||||||    
T  39933600 tattgtgagagataagagggttaaatcataacccttggat 39933561  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 125
Target Start/End: Original strand, 35653141 - 35653177
Alignment:
Q  89 tattgtgagagatgagagggttaaatcataaccattg 125  Q
    ||||||||||||||||||||||||||| |||||||||    
T  35653141 tattgtgagagatgagagggttaaatcctaaccattg 35653177  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 89 - 128
Target Start/End: Complemental strand, 36502408 - 36502369
Alignment:
Q  89 tattgtgagagatgagagggttaaatcataaccattggat 128  Q
    |||||||||||||||||||||| |||| ||||||||||||    
T  36502408 tattgtgagagatgagagggtttaatcctaaccattggat 36502369  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 121
Target Start/End: Original strand, 36496999 - 36497031
Alignment:
Q  89 tattgtgagagatgagagggttaaatcataacc 121  Q
    |||||||||||||||||||||||||||| ||||    
T  36496999 tattgtgagagatgagagggttaaatcacaacc 36497031  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 93 - 128
Target Start/End: Original strand, 15248900 - 15248935
Alignment:
Q  93 gtgagagatgagagggttaaatcataaccattggat 128  Q
    ||||||||||||||||||||||||||||| ||||||    
T  15248900 gtgagagatgagagggttaaatcataacccttggat 15248935  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 89 - 128
Target Start/End: Original strand, 51184538 - 51184577
Alignment:
Q  89 tattgtgagagatgagagggttaaatcataaccattggat 128  Q
    |||||||||||||||||||||||||| |||||| ||||||    
T  51184538 tattgtgagagatgagagggttaaattataacctttggat 51184577  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 134
Target Start/End: Complemental strand, 13784933 - 13784888
Alignment:
Q  89 tattgtgagagatgagagggttaaatcataaccattggataaattt 134  Q
    ||||||||||||||||||| ||||| ||||||| |||||| |||||    
T  13784933 tattgtgagagatgagaggattaaaccataacctttggatcaattt 13784888  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 134
Target Start/End: Original strand, 23902778 - 23902823
Alignment:
Q  89 tattgtgagagatgagagggttaaatcataaccattggataaattt 134  Q
    ||||||||||||||||||| ||||| ||||||| |||||| |||||    
T  23902778 tattgtgagagatgagaggattaaaccataacctttggatcaattt 23902823  T

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Target: scaffold0025 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 121
Target Start/End: Original strand, 150371 - 150403
Alignment:
Q  89 tattgtgagagatgagagggttaaatcataacc 121  Q
    ||||||||||||||||||||||||| |||||||    
T  150371 tattgtgagagatgagagggttaaaccataacc 150403  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 132
Target Start/End: Original strand, 22405800 - 22405836
Alignment:
Q  96 agagatgagagggttaaatcataaccattggataaat 132  Q
    |||||||||||||||||||| | ||||||||||||||    
T  22405800 agagatgagagggttaaatcttgaccattggataaat 22405836  T

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