View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5731-Insertion-6 (Length: 320)

Name: NF5731-Insertion-6
Description: NF5731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5731-Insertion-6
NF5731-Insertion-6
[»] chr7 (1 HSPs)
chr7 (8-320)||(34335187-34335499)


Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 8 - 320
Target Start/End: Complemental strand, 34335499 - 34335187
Alignment:
Q  8 cattagggaactccatctttctcagtttacatagtccctcccctaactccatcatagctcctttatgattctatattcagcacatgaacagattttattt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34335499 cattagggaactccatctttctcagtttacatagtccctcccctaactccatcatagctcctttatgattctatattcagcacatgaacagattttattt 34335400  T
Q  108 aatttgaacaataatacataatccaaataaaatgaaaactaataacaagacaagtaatattgaaaacctgattgaataggtgatgaaatccaactgcaca 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34335399 aatttgaacaataatacataatccaaataaaatgaaaactaataacaagacaagtaatattgaaaacctgattgaataggtgatgaaatccaactgcaca 34335300  T
Q  208 ttgcagtattccatgaattaatgttcttgatggctcttcagcattgtgccaaagtgattcaagatagtcatgacatttgtagtactctccaccattaaat 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34335299 ttgcagtattccatgaattaatgttcttgatggctcttcagcattgtgccaaagtgattcaagatagtcatgacatttgtagtactctccaccattaaat 34335200  T
Q  308 agagtcactgctt 320  Q
    |||||||||||||    
T  34335199 agagtcactgctt 34335187  T

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