View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5731_high_10 (Length: 316)
Name: NF5731_high_10
Description: NF5731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5731_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 19 - 303
Target Start/End: Complemental strand, 24950780 - 24950495
Alignment:
| Q |
19 |
acggcctttctgtgaacaatggaagatgcttgagaaagaagtgatcgaccacaggaatcatgaaccatacattggtccatttatttcctccctactatag |
118 |
Q |
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| T |
24950780 |
acggcctttctgtgaacaatggaagatgcttgagaaagaagtgatcgaccacaggaatcatgaaccatacattggtccatttctttcctccctactatag |
24950681 |
T |
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| Q |
119 |
agtctttccnnnnnnnn-cccttgtgttactgaagtgaatggaggttgttactgacaatgtttatgatcggcgatgggacgatccttatgtacgtcacac |
217 |
Q |
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| T |
24950680 |
agtctttcctttttctttcccttgtgttactgaagtgaatggaggttgttactgacaatgtttatgatcggcgatgggacgatccttatgtacgttgcac |
24950581 |
T |
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| Q |
218 |
gcatgaaggtctcttaaagtggaaatatgctactctgaattcagttgattttctctttgaggtgatatttttcaacttatacacat |
303 |
Q |
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| T |
24950580 |
gcatgaaggtctcttaaagtggaaatatgctactctgaattcagttgattttctctttgaggtgatatttttcaacttatacacat |
24950495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 136 - 297
Target Start/End: Complemental strand, 24368293 - 24368132
Alignment:
| Q |
136 |
cccttgtgttactgaagtgaatggaggttgttactgacaatgtttatgatcggcgatgggacgatccttatgtacgtcacacgcatgaaggtctcttaaa |
235 |
Q |
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| T |
24368293 |
ccctcgtgttactaaagtgaatggaggttgttgctgacaatgtttatgatcagggatgggacgatccttatgtacctcgtactcatgaaggtctcttaaa |
24368194 |
T |
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| Q |
236 |
gtggaaatatgctactctgaattcagttgattttctctttgaggtgatatttttcaacttat |
297 |
Q |
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| T |
24368193 |
gtggaaatatgctgctctaaattcagttgattttctctttgaggtgatattttttaacttat |
24368132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 83
Target Start/End: Complemental strand, 24368982 - 24368919
Alignment:
| Q |
20 |
cggcctttctgtgaacaatggaagatgcttgagaaagaagtgatcgaccacaggaatcatgaac |
83 |
Q |
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| T |
24368982 |
cggcctttctgtgagcggtggaagatgcttgagaaagaagtgattgaacccaggaatcatgaac |
24368919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 280
Target Start/End: Original strand, 4300233 - 4300321
Alignment:
| Q |
192 |
tgggacgatccttatgtacgtcacacgcatgaaggtctcttaaagtggaaatatgctactctgaattcagttgattttctctttgaggt |
280 |
Q |
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| T |
4300233 |
tgggatgatccttatgtaccacgtactcatgaaggactcttaaagtggaaatacgccaatttaaattcagttgactttctgtttgaggt |
4300321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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