View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5731_high_4 (Length: 414)
Name: NF5731_high_4
Description: NF5731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5731_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 362; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 18 - 397
Target Start/End: Original strand, 107313 - 107689
Alignment:
| Q |
18 |
gtcaaagaccctcaggctgagttgattgatcctgcactcaacgggactctcaatgttctcaaatcatgtgccaaatcgccattactcaaacgtgttgtct |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
107313 |
gtcaaagaccctcaggctgagttgattgatcctgcactcaacgggactctcaatgttctcaaatcatgtgccaaatcgccattactcaaacgtgttgtct |
107412 |
T |
|
| Q |
118 |
taacctcttctgctgctgctgttgcgtacaatgaaaagcctcgaactcctgatgttgttgttgatgaaacttggtttactgatgctgatttctgtgccaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
107413 |
taacctcttctgctgctgctgttgcgtacaatgaaaagcctcgaactcctgatgttgttgttgatgaaacttggtttactgatgctgatttctgtgccaa |
107512 |
T |
|
| Q |
218 |
attaaacgtatctccctaaacttacaaaatcacacaatttaatcataaagtacataaaaatttgtcaatttattagtccataacatcttcattagcaagg |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
107513 |
attaaacgtatctccctaaacttacaaaatcacacaatttaatcataaagtacataaaaatttgtcaat---ttagtccataacatcttcattagcaagg |
107609 |
T |
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| Q |
318 |
actaaattgtttttgaagttagtgtttcaatcttaaatgtatcttcttcagccaatgcgctagtccataaaattctaatg |
397 |
Q |
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| T |
107610 |
actaaattgtttttgaagttggtgtttcaatcttaaatgtatcttcttcagccaatgcgctagtccataaaattctaatg |
107689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 18 - 228
Target Start/End: Original strand, 87949 - 88159
Alignment:
| Q |
18 |
gtcaaagaccctcaggctgagttgattgatcctgcactcaacgggactctcaatgttctcaaatcatgtgccaaatcgccattactcaaacgtgttgtct |
117 |
Q |
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| T |
87949 |
gtcaaggatcctcaggctgaattgattgatcctgctctcaaagggactctcaatgttctcaactcatgtgctaaatccccatcactcaaacgtgttgttt |
88048 |
T |
|
| Q |
118 |
taacctcttctgctgctgctgttgcgtacaatgaaaagcctcgaactcctgatgttgttgttgatgaaacttggtttactgatgctgatttctgtgccaa |
217 |
Q |
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|||| |||||| |||||||||||| || |||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| || |
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| T |
88049 |
taacttcttctattgctgctgttgcttataatgggaagcctcgaactcctgatgttgttgttgatgagacttggtttacagatgctgatttctgtgctaa |
88148 |
T |
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| Q |
218 |
attaaacgtat |
228 |
Q |
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|| ||| |||| |
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| T |
88149 |
atcaaatgtat |
88159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 60 - 200
Target Start/End: Original strand, 2707050 - 2707190
Alignment:
| Q |
60 |
gggactctcaatgttctcaaatcatgtgccaaatcgccattactcaaacgtgttgtcttaacctcttctgctgctgctgttgcgtacaatgaaaagcctc |
159 |
Q |
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|||||||| ||||| || ||||||||||| |||| |||| || ||||||||||| |||||||||||| ||||| |||||||||||| ||||||||| |
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| T |
2707050 |
gggactctaaatgtgctgaaatcatgtgcaaaatttccatctctgaaacgtgttgtattaacctcttctatcgctgcggttgcgtacaataaaaagcctc |
2707149 |
T |
|
| Q |
160 |
gaactcctgatgttgttgttgatgaaacttggtttactgat |
200 |
Q |
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| T |
2707150 |
aaactctcgatgtagttgtcgatgaaacttggtttactgat |
2707190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 135; Significance: 3e-70; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 38 - 228
Target Start/End: Complemental strand, 44784893 - 44784703
Alignment:
| Q |
38 |
gttgattgatcctgcactcaacgggactctcaatgttctcaaatcatgtgccaaatcgccattactcaaacgtgttgtcttaacctcttctgctgctgct |
137 |
Q |
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||||||||||||||| ||||| |||||||||||||||||||| |||||||| ||||| |||| ||||||||||||||||||||| ||||||| |||||| |
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| T |
44784893 |
gttgattgatcctgcgctcaaagggactctcaatgttctcaactcatgtgcaaaatccccatcactcaaacgtgttgtcttaacatcttctgtcgctgct |
44784794 |
T |
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| Q |
138 |
gttgcgtacaatgaaaagcctcgaactcctgatgttgttgttgatgaaacttggtttactgatgctgatttctgtgccaaattaaacgtat |
228 |
Q |
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| T |
44784793 |
gttgcatacaatggaaagcctcgaactcctgatgttgttgttgatgagacttggtttactgatgctgatttctgtgctaaatcaaacgtat |
44784703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 99
Target Start/End: Original strand, 25934237 - 25934307
Alignment:
| Q |
29 |
tcaggctgagttgattgatcctgcactcaacgggactctcaatgttctcaaatcatgtgccaaatcgccat |
99 |
Q |
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| T |
25934237 |
tcaggctgagttgattgatccggcactgaagggaactcttaatgttcttcaatcatgtgcaaaatcaccat |
25934307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 26101881 - 26101933
Alignment:
| Q |
36 |
gagttgattgatcctgcactcaacgggactctcaatgttctcaaatcatgtgc |
88 |
Q |
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|||||||||||||| ||||| || || ||||| |||||||| ||||||||||| |
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| T |
26101881 |
gagttgattgatccggcacttaagggaactcttaatgttcttaaatcatgtgc |
26101933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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