View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5731_high_5 (Length: 385)
Name: NF5731_high_5
Description: NF5731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5731_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 20 - 368
Target Start/End: Original strand, 107344 - 107689
Alignment:
| Q |
20 |
ctgcactcaacgggactctcaatgttctcaaatcatgtgccaaatcgccattactcaaacgtgttgtcttaacctcttctgctgctgctgttgcgtacaa |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
107344 |
ctgcactcaacgggactctcaatgttctcaaatcatgtgccaaatcgccattactcaaacgtgttgtcttaacctcttctgctgctgctgttgcgtacaa |
107443 |
T |
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| Q |
120 |
tgaaaagcctcgaactcctgatgttgttgttgatgaaacttggtttactgatgctgatttctgtgccaaattaaacgtatctccctaaacttacaaaatc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
107444 |
tgaaaagcctcgaactcctgatgttgttgttgatgaaacttggtttactgatgctgatttctgtgccaaattaaacgtatctccctaaacttacaaaatc |
107543 |
T |
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| Q |
220 |
acacaatttaatcataaagtacataaaaatttgtcaatttattagtccataacatcttcattagcaaggactaaattgtttttgaagttagtgtttcaat |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
107544 |
acacaatttaatcataaagtacataaaaatttgtcaat---ttagtccataacatcttcattagcaaggactaaattgtttttgaagttggtgtttcaat |
107640 |
T |
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| Q |
320 |
cttaaatgtatcttcttcagccaatgcgctagtccataaaattctaatg |
368 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
107641 |
cttaaatgtatcttcttcagccaatgcgctagtccataaaattctaatg |
107689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 20 - 199
Target Start/End: Original strand, 87980 - 88159
Alignment:
| Q |
20 |
ctgcactcaacgggactctcaatgttctcaaatcatgtgccaaatcgccattactcaaacgtgttgtcttaacctcttctgctgctgctgttgcgtacaa |
119 |
Q |
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|||| ||||| |||||||||||||||||||| |||||||| ||||| |||| ||||||||||||||| ||||| |||||| |||||||||||| || || |
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| T |
87980 |
ctgctctcaaagggactctcaatgttctcaactcatgtgctaaatccccatcactcaaacgtgttgttttaacttcttctattgctgctgttgcttataa |
88079 |
T |
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| Q |
120 |
tgaaaagcctcgaactcctgatgttgttgttgatgaaacttggtttactgatgctgatttctgtgccaaattaaacgtat |
199 |
Q |
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| T |
88080 |
tgggaagcctcgaactcctgatgttgttgttgatgagacttggtttacagatgctgatttctgtgctaaatcaaatgtat |
88159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 31 - 171
Target Start/End: Original strand, 2707050 - 2707190
Alignment:
| Q |
31 |
gggactctcaatgttctcaaatcatgtgccaaatcgccattactcaaacgtgttgtcttaacctcttctgctgctgctgttgcgtacaatgaaaagcctc |
130 |
Q |
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|||||||| ||||| || ||||||||||| |||| |||| || ||||||||||| |||||||||||| ||||| |||||||||||| ||||||||| |
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| T |
2707050 |
gggactctaaatgtgctgaaatcatgtgcaaaatttccatctctgaaacgtgttgtattaacctcttctatcgctgcggttgcgtacaataaaaagcctc |
2707149 |
T |
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| Q |
131 |
gaactcctgatgttgttgttgatgaaacttggtttactgat |
171 |
Q |
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| T |
2707150 |
aaactctcgatgtagttgtcgatgaaacttggtttactgat |
2707190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 20 - 199
Target Start/End: Complemental strand, 44784882 - 44784703
Alignment:
| Q |
20 |
ctgcactcaacgggactctcaatgttctcaaatcatgtgccaaatcgccattactcaaacgtgttgtcttaacctcttctgctgctgctgttgcgtacaa |
119 |
Q |
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|||| ||||| |||||||||||||||||||| |||||||| ||||| |||| ||||||||||||||||||||| ||||||| ||||||||||| ||||| |
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| T |
44784882 |
ctgcgctcaaagggactctcaatgttctcaactcatgtgcaaaatccccatcactcaaacgtgttgtcttaacatcttctgtcgctgctgttgcatacaa |
44784783 |
T |
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| Q |
120 |
tgaaaagcctcgaactcctgatgttgttgttgatgaaacttggtttactgatgctgatttctgtgccaaattaaacgtat |
199 |
Q |
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|| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
44784782 |
tggaaagcctcgaactcctgatgttgttgttgatgagacttggtttactgatgctgatttctgtgctaaatcaaacgtat |
44784703 |
T |
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