View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5731_high_8 (Length: 339)

Name: NF5731_high_8
Description: NF5731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5731_high_8
NF5731_high_8
[»] chr7 (2 HSPs)
chr7 (81-315)||(47331027-47331259)
chr7 (44-80)||(47332002-47332038)
[»] chr4 (2 HSPs)
chr4 (11-46)||(36518420-36518455)
chr4 (11-45)||(21351352-21351386)
[»] chr1 (1 HSPs)
chr1 (11-46)||(44404657-44404692)
[»] chr6 (2 HSPs)
chr6 (11-45)||(35039093-35039127)
chr6 (12-45)||(18310007-18310040)
[»] chr5 (3 HSPs)
chr5 (11-45)||(20337169-20337203)
chr5 (11-45)||(20745701-20745735)
chr5 (11-47)||(17994793-17994829)
[»] chr2 (1 HSPs)
chr2 (11-44)||(5250322-5250355)


Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 81 - 315
Target Start/End: Complemental strand, 47331259 - 47331027
Alignment:
Q  81 ataggttctatcgcacggagggtctttccactatttttcatgaccaaaaacacaaaacaaatgacacatggccggggatctaatttgttctgttctaaaa 180  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  47331259 ataggtcctatcgcacggagggtctttccactatttttcatgaccaaa--cacaaaacaaatgacacatggtcggggatctaatttgttctgttcaaaaa 47331162  T
Q  181 acatgattgtaacattgctgctggatagcaaaatttgcaatatttaagcctcaccaattttagcagtaatgcatcatttataaacatcattcctctttcc 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  47331161 acatgattgtaacattgctgctggatagcaaaatttgcaatatttaagcctcaccaattttagcagtaatgcatcatttataaacattattcctctttcc 47331062  T
Q  281 gaaactgaatttaagacagaattaaatctaattga 315  Q
    |||||||||||||||||||||||||||||||||||    
T  47331061 gaaactgaatttaagacagaattaaatctaattga 47331027  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 44 - 80
Target Start/End: Complemental strand, 47332038 - 47332002
Alignment:
Q  44 attgtctcctacacgacacttttactaatggcatgaa 80  Q
    |||||||||||||||||||||||||||||||||||||    
T  47332038 attgtctcctacacgacacttttactaatggcatgaa 47332002  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 46
Target Start/End: Original strand, 36518420 - 36518455
Alignment:
Q  11 cataggcatttaattttctaatatagtaagtagatt 46  Q
    ||||||||||||||||| ||||||||||||||||||    
T  36518420 cataggcatttaattttgtaatatagtaagtagatt 36518455  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 45
Target Start/End: Complemental strand, 21351386 - 21351352
Alignment:
Q  11 cataggcatttaattttctaatatagtaagtagat 45  Q
    ||||||||||||||||| |||||||||||||||||    
T  21351386 cataggcatttaattttataatatagtaagtagat 21351352  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 46
Target Start/End: Complemental strand, 44404692 - 44404657
Alignment:
Q  11 cataggcatttaattttctaatatagtaagtagatt 46  Q
    ||||||||||||||||| ||||||||||||||||||    
T  44404692 cataggcatttaattttataatatagtaagtagatt 44404657  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 45
Target Start/End: Complemental strand, 35039127 - 35039093
Alignment:
Q  11 cataggcatttaattttctaatatagtaagtagat 45  Q
    ||||||||||||||||| |||||||||||||||||    
T  35039127 cataggcatttaattttataatatagtaagtagat 35039093  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 45
Target Start/End: Complemental strand, 18310040 - 18310007
Alignment:
Q  12 ataggcatttaattttctaatatagtaagtagat 45  Q
    |||||||||||||||| |||||||||||||||||    
T  18310040 ataggcatttaattttataatatagtaagtagat 18310007  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 45
Target Start/End: Complemental strand, 20337203 - 20337169
Alignment:
Q  11 cataggcatttaattttctaatatagtaagtagat 45  Q
    ||||||||||||||||| |||||||||||||||||    
T  20337203 cataggcatttaattttataatatagtaagtagat 20337169  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 45
Target Start/End: Complemental strand, 20745735 - 20745701
Alignment:
Q  11 cataggcatttaattttctaatatagtaagtagat 45  Q
    ||||||||||||||||| |||||||||||||||||    
T  20745735 cataggcatttaattttataatatagtaagtagat 20745701  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 17994829 - 17994793
Alignment:
Q  11 cataggcatttaattttctaatatagtaagtagattg 47  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  17994829 cataggcatttaactttataatatagtaagtagattg 17994793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 44
Target Start/End: Complemental strand, 5250355 - 5250322
Alignment:
Q  11 cataggcatttaattttctaatatagtaagtaga 44  Q
    ||||||||||||||||| ||||||||||||||||    
T  5250355 cataggcatttaattttataatatagtaagtaga 5250322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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