View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5731_high_9 (Length: 337)
Name: NF5731_high_9
Description: NF5731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5731_high_9 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 21706782 - 21706446
Alignment:
| Q |
1 |
attcggcaaacaatatagtgttatctttgtcaagtttggaagaataacttccatttcatcaatagttctgtctccaccatcatgtttaaaaacctcttca |
100 |
Q |
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| T |
21706782 |
attcggcaaacaatatagtcttatctctgtcaagtttggaagaataacttccatttcatcaatagttctgtctccaccatcatgtttaaaaacctcttca |
21706683 |
T |
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| Q |
101 |
atttgatctgagtttcgtatttcaagacttcttaattttggaagcattttgctcatagaaacagggaaaaggcttttcaacttgttgcagcctccgactg |
200 |
Q |
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| T |
21706682 |
atttgatctgagtttcttatttcaagactgcttaattttggaagcattttcctcatagaaacagggaaaaggcttttcaacttgttgcagcctccgacta |
21706583 |
T |
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| Q |
201 |
ctacagctgttagctttggaaaatacacttcggcattgggcagcagcgcaagttcttcatttgctaaaacgatgtgttgcaattcttggcagccgccaat |
300 |
Q |
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| T |
21706582 |
ctacatctgttagctttggaaaatacacttcggcattgggcagcagcgcaagttcttcatttgctaaaacgatgtgttgcaattcttggcagtcgccaat |
21706483 |
T |
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| Q |
301 |
agaaatggacatcaactctggtagacttctagattcc |
337 |
Q |
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| T |
21706482 |
ttcaatggacatcaactctggtagacttctagattcc |
21706446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 20 - 337
Target Start/End: Original strand, 21712695 - 21713018
Alignment:
| Q |
20 |
gttatctttgtcaagtttggaagaataa------cttccatttcatcaatagttctgtctccaccatcatgtttaaaaacctcttcaatttgatctgagt |
113 |
Q |
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| T |
21712695 |
gttatctctgtcaagtttggaagaataagaacaacttccatttcatttacagttctgtctccaccgccatttctaaaaacctcttcaaattgagtagcgt |
21712794 |
T |
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| Q |
114 |
ttcgtatttcaagacttcttaattttggaagcattttgctcatagaaacagggaaaaggcttttcaacttgttgcagcctccgactgctacagctgttag |
213 |
Q |
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| T |
21712795 |
cgaaaatgtgaagagtgcttaattgcggaagcattttaaccatagcaacagggaaaaggcttttcaacttgttgcatcttttgacttctacatgtgctag |
21712894 |
T |
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| Q |
214 |
ctttggaaaatacacttcggcattgggcagcagcgcaagttcttcatttgctaaaacgatgtgttgcaattcttggcagccgccaatagaaatggacatc |
313 |
Q |
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| T |
21712895 |
ctttgggaaatagacttcagcattaggttgctgcacaagttcttcattttctgcaacaatgtgttccaattcttgggagttgtaaatagaaatggacatc |
21712994 |
T |
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| Q |
314 |
aactctggtagacttctagattcc |
337 |
Q |
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| T |
21712995 |
aactctggtagacttctagattcc |
21713018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 239 - 337
Target Start/End: Complemental strand, 21709456 - 21709358
Alignment:
| Q |
239 |
ggcagcagcgcaagttcttcatttgctaaaacgatgtgttgcaattcttggcagccgccaatagaaatggacatcaactctggtagacttctagattcc |
337 |
Q |
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||||||||| |||| |||||||||||| |||||| |||| ||||||||||||| | |||||||| ||||||||||| | ||||||||||||||||| |
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| T |
21709456 |
ggcagcagcacaagctcttcatttgctgcaacgatttgttccaattcttggcagttgtaaatagaaagggacatcaactttagtagacttctagattcc |
21709358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 131 - 182
Target Start/End: Complemental strand, 21709534 - 21709483
Alignment:
| Q |
131 |
cttaattttggaagcattttgctcatagaaacagggaaaaggcttttcaact |
182 |
Q |
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| T |
21709534 |
cttaattgtggaagcattttaatcatagtaacaaggaaaaggcttttcaact |
21709483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 191
Target Start/End: Complemental strand, 21125507 - 21125479
Alignment:
| Q |
163 |
agggaaaaggcttttcaacttgttgcagc |
191 |
Q |
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| T |
21125507 |
agggaaaaggcttttcaacttgttgcagc |
21125479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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