View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5731_low_1 (Length: 502)
Name: NF5731_low_1
Description: NF5731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5731_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 1 - 488
Target Start/End: Original strand, 34335711 - 34336199
Alignment:
| Q |
1 |
tgaatttgagcaggtagtgatgatatttgtgttgcaatggatcaatcagaaagatcctaccaacttatgggagaatatgctgcagggaagcgtgtataca |
100 |
Q |
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| T |
34335711 |
tgaatttgagcaggtagtgatgatatttgtgttgcaatggatcaatcagaaagatcctaccaacttatgggagaatatgctgcagggaagcgtgtatacg |
34335810 |
T |
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| Q |
101 |
atctagaacttggtcgtgatgcatcagtgtacattgtgttctgccctcaagggtctaatggtgccactgaagctccaagggcaaagcttccaaggcttaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34335811 |
atctagaacttggtcgtgatgcatcagtgtacattgtgttctgccctcaagggtctaatggtgccactgaagctccaagggcaaagcttccaaggcttaa |
34335910 |
T |
|
| Q |
201 |
tgctacctcagaacatcttgtagcatatgaatacaagtaaatgcatgaatttattcttcacttctattagatattacaaaatgtataaaatcgtcaagga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34335911 |
tgctacctcagaacatcttgtagcatatgaatacaagtaaatgcatgaatttattcttcacttctattagatattacaaaatgtataaaatcgtcaagga |
34336010 |
T |
|
| Q |
301 |
ttacatgccgggaagagtcttcttgatcaagcatcgcagaatggaatcctgaagtagtagccaccatatactaaacttttgtgttttgtaatgatctac- |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34336011 |
ttacatgccgggaagagtcttcttgatcaagcatcgcaaaatggaatcctgaagtagtagccaccatatactaaacttttgtgttttgtaatgatctaca |
34336110 |
T |
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| Q |
400 |
nnnnnnnttatatttatcaggaggattaaacttcataaatccaaacattttccattgattttgcagatttagaccaataaaacacaggt |
488 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34336111 |
aaaaaaattatatttatcaggaggattaaacttcataaatccaaacattttccattgattttgcagatttagaccaataaaacacaggt |
34336199 |
T |
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