View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5731_low_15 (Length: 248)

Name: NF5731_low_15
Description: NF5731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5731_low_15
NF5731_low_15
[»] chr5 (22 HSPs)
chr5 (121-248)||(20745712-20745839)
chr5 (121-248)||(17994806-17994932)
chr5 (121-248)||(20337180-20337306)
chr5 (121-236)||(27060146-27060261)
chr5 (120-225)||(7282145-7282250)
chr5 (121-236)||(4879627-4879742)
chr5 (123-236)||(38933383-38933495)
chr5 (121-229)||(26910330-26910438)
chr5 (120-248)||(34377002-34377130)
chr5 (122-236)||(3024702-3024816)
chr5 (120-222)||(20998670-20998772)
chr5 (120-225)||(33614057-33614162)
chr5 (125-236)||(29641090-29641199)
chr5 (120-248)||(2191498-2191625)
chr5 (120-248)||(35542321-35542449)
chr5 (125-236)||(10514622-10514734)
chr5 (121-236)||(19445407-19445520)
chr5 (121-198)||(21024887-21024964)
chr5 (120-200)||(26324968-26325047)
chr5 (121-236)||(3154273-3154387)
chr5 (116-236)||(1855400-1855513)
chr5 (178-230)||(33927415-33927467)
[»] chr4 (18 HSPs)
chr4 (121-248)||(22118164-22118291)
chr4 (121-248)||(36518317-36518443)
chr4 (121-248)||(2775311-2775437)
chr4 (125-248)||(21351363-21351486)
chr4 (120-248)||(28970820-28970948)
chr4 (121-236)||(53338842-53338956)
chr4 (120-224)||(15658331-15658435)
chr4 (120-230)||(54333887-54333997)
chr4 (116-236)||(56003426-56003546)
chr4 (121-236)||(19834406-19834520)
chr4 (122-248)||(13625423-13625548)
chr4 (120-230)||(7647861-7647971)
chr4 (120-200)||(5276457-5276536)
chr4 (120-196)||(34060148-34060223)
chr4 (121-236)||(17696604-17696718)
chr4 (142-225)||(36852817-36852900)
chr4 (120-198)||(14833131-14833208)
chr4 (120-189)||(23476172-23476240)
[»] chr8 (16 HSPs)
chr8 (121-248)||(23524510-23524637)
chr8 (125-230)||(7014822-7014927)
chr8 (120-196)||(27273015-27273091)
chr8 (121-236)||(6480843-6480958)
chr8 (120-225)||(36603755-36603859)
chr8 (120-225)||(42781682-42781786)
chr8 (121-229)||(42814522-42814630)
chr8 (123-248)||(44597188-44597313)
chr8 (121-235)||(3308499-3308612)
chr8 (123-236)||(38959214-38959327)
chr8 (120-200)||(5832010-5832089)
chr8 (124-199)||(9757137-9757212)
chr8 (120-225)||(30822729-30822833)
chr8 (120-200)||(14082217-14082296)
chr8 (120-230)||(37865160-37865269)
chr8 (120-199)||(33427815-33427892)
[»] chr7 (11 HSPs)
chr7 (121-248)||(17470780-17470906)
chr7 (121-248)||(17582308-17582434)
chr7 (116-236)||(19516631-19516752)
chr7 (121-248)||(17465912-17466039)
chr7 (121-248)||(17587175-17587302)
chr7 (121-236)||(42684806-42684921)
chr7 (120-248)||(14305423-14305550)
chr7 (120-230)||(23771900-23772009)
chr7 (120-196)||(8928740-8928815)
chr7 (121-236)||(5692977-5693091)
chr7 (184-230)||(42831168-42831214)
[»] chr2 (16 HSPs)
chr2 (121-248)||(5250332-5250459)
chr2 (120-230)||(26818107-26818217)
chr2 (120-248)||(11704547-11704675)
chr2 (120-200)||(19132469-19132549)
chr2 (121-236)||(33665803-33665917)
chr2 (120-225)||(26825329-26825434)
chr2 (121-196)||(19170552-19170627)
chr2 (126-248)||(1466663-1466784)
chr2 (184-237)||(4810141-4810194)
chr2 (120-196)||(16726644-16726719)
chr2 (120-197)||(21094307-21094383)
chr2 (120-165)||(33903937-33903982)
chr2 (121-227)||(30598000-30598104)
chr2 (178-241)||(35288904-35288967)
chr2 (116-170)||(11445800-11445854)
chr2 (175-228)||(15336396-15336449)
[»] chr6 (12 HSPs)
chr6 (121-248)||(17936991-17937118)
chr6 (121-248)||(35039104-35039231)
chr6 (125-236)||(4422312-4422422)
chr6 (121-248)||(18310018-18310144)
chr6 (120-225)||(11955917-11956022)
chr6 (120-200)||(1076706-1076785)
chr6 (120-248)||(2517666-2517793)
chr6 (120-200)||(33802496-33802574)
chr6 (120-230)||(10269404-10269514)
chr6 (120-200)||(14891792-14891871)
chr6 (120-200)||(21796069-21796148)
chr6 (120-199)||(34852837-34852914)
[»] chr1 (13 HSPs)
chr1 (121-248)||(44404669-44404798)
chr1 (120-236)||(27792749-27792865)
chr1 (121-236)||(38848096-38848211)
chr1 (121-236)||(9261286-9261401)
chr1 (120-230)||(34684143-34684253)
chr1 (120-200)||(18810832-18810911)
chr1 (120-196)||(52525178-52525253)
chr1 (120-200)||(41833332-41833411)
chr1 (120-248)||(31616221-31616349)
chr1 (178-230)||(17668730-17668782)
chr1 (178-241)||(12249182-12249245)
chr1 (120-225)||(41966509-41966614)
chr1 (178-230)||(36677640-36677692)
[»] chr3 (13 HSPs)
chr3 (116-236)||(11331458-11331579)
chr3 (120-248)||(16339295-16339422)
chr3 (121-236)||(51244893-51245008)
chr3 (121-248)||(50736622-50736748)
chr3 (121-248)||(50776107-50776233)
chr3 (125-235)||(52857723-52857834)
chr3 (120-225)||(35091479-35091584)
chr3 (120-248)||(31372027-31372154)
chr3 (120-225)||(50767723-50767828)
chr3 (122-230)||(30814447-30814555)
chr3 (121-236)||(54508776-54508891)
chr3 (121-236)||(49109615-49109729)
chr3 (120-200)||(6108529-6108607)
[»] scaffold0121 (2 HSPs)
scaffold0121 (120-230)||(23424-23534)
scaffold0121 (121-236)||(18230-18344)
[»] scaffold0242 (1 HSPs)
scaffold0242 (120-248)||(5871-5999)
[»] scaffold0169 (1 HSPs)
scaffold0169 (124-203)||(9587-9665)
[»] scaffold0122 (1 HSPs)
scaffold0122 (120-248)||(1867-1993)
[»] scaffold0047 (1 HSPs)
scaffold0047 (120-198)||(29965-30042)
[»] scaffold0016 (1 HSPs)
scaffold0016 (184-230)||(94390-94436)
[»] scaffold0005 (1 HSPs)
scaffold0005 (120-198)||(6491-6568)


Alignment Details
Target: chr5 (Bit Score: 104; Significance: 6e-52; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 121 - 248
Target Start/End: Complemental strand, 20745839 - 20745712
Alignment:
Q  121 gggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaaatggta 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |  |||||||||    
T  20745839 gggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacctcatcaataggaaattacaaaaatgcccttcttaggggcaaaatggta 20745740  T
Q  221 aaatcataggcatttaattttctaatat 248  Q
    ||||||||||||||||||||| ||||||    
T  20745739 aaatcataggcatttaattttataatat 20745712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 121 - 248
Target Start/End: Complemental strand, 17994932 - 17994806
Alignment:
Q  121 gggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaaatggta 220  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||||||||  |||||||| ||| |||||||||||||| |||||| |  |||||||||    
T  17994932 gggcaaaatgagaaatgcaccctaaaaatgatgaggtggcactaaccacacc-catcaataggaagttacaaaaatgcccctcttaggggcaaaatggta 17994834  T
Q  221 aaatcataggcatttaattttctaatat 248  Q
    ||||||||||||||||| ||| ||||||    
T  17994833 aaatcataggcatttaactttataatat 17994806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 121 - 248
Target Start/End: Complemental strand, 20337306 - 20337180
Alignment:
Q  121 gggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaaatggta 220  Q
    |||||||||||||||| ||||||||||||||||||||||||| ||||||||  |||||||| |||||||||||||||||| | |||  |  |||||||||    
T  20337306 gggcaaaatgggaaatgcaccctaaaaatgatgaggtggcacgaaccacac-ccatcaataggaaattacaaaaatgccccttttaagggcaaaatggta 20337208  T
Q  221 aaatcataggcatttaattttctaatat 248  Q
    ||||||||||||||||||||| ||||||    
T  20337207 aaatcataggcatttaattttataatat 20337180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 121 - 236
Target Start/End: Complemental strand, 27060261 - 27060146
Alignment:
Q  121 gggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaaatggta 220  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||||||||  |||||||| |||||||||||||||||  || ||| |  |||||||||    
T  27060261 gggcaaaatgggaaatgcaccctaaaaatgatgaggtgacactaaccacaccccatcaataggaaattacaaaaatgcctctcataggggcaaaatggta 27060162  T
Q  221 aaatcataggcattta 236  Q
    |||||||||| |||||    
T  27060161 aaatcatagggattta 27060146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 120 - 225
Target Start/End: Complemental strand, 7282250 - 7282145
Alignment:
Q  120 agggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaaatggt 219  Q
    ||||||||||| || || ||||||||| ||||||||||| ||||||||||||  ||||||||||||||||| ||||||||| || |||||||||||||||    
T  7282250 agggcaaaatgagatattcaccctaaagatgatgaggtgacactaaccacaccccatcaataagaaattactaaaatgcccctcctagagataaaatggt 7282151  T
Q  220 aaaatc 225  Q
    ||||||    
T  7282150 aaaatc 7282145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 121 - 236
Target Start/End: Complemental strand, 4879742 - 4879627
Alignment:
Q  121 gggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaaatggta 220  Q
    ||||||||||| |||| ||||||||||||||| ||||||||||||||||||  |||||||| |||||||||||||||||| ||||||    |||||||||    
T  4879742 gggcaaaatggaaaatgcaccctaaaaatgattaggtggcactaaccacaccccatcaataggaaattacaaaaatgcccctcttaggagcaaaatggta 4879643  T
Q  221 aaatcataggcattta 236  Q
    |||| ||||| |||||    
T  4879642 aaataataggaattta 4879627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 123 - 236
Target Start/End: Complemental strand, 38933495 - 38933383
Alignment:
Q  123 gcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaaatggtaaa 222  Q
    |||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||  ||||||||||||| ||||||||| ||  | |||||||||    
T  38933495 gcaaaatgggaaatgcaccctaaaaatgatgagatggcac-aaccacacatcatcaatagaaaattacaaaaatacccttcttaaaggcacaatggtaaa 38933397  T
Q  223 atcataggcattta 236  Q
    | |||||| |||||    
T  38933396 accatagggattta 38933383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 121 - 229
Target Start/End: Original strand, 26910330 - 26910438
Alignment:
Q  121 gggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaaatggta 220  Q
    |||| ||||||||||| |||||||||||||||||| || ||||||||||||  |||||||| |||||||||||||||||| |||||| |  |||||||||    
T  26910330 gggctaaatgggaaatgcaccctaaaaatgatgagatgacactaaccacaccccatcaataggaaattacaaaaatgcccctcttagggggaaaatggta 26910429  T
Q  221 aaatcatag 229  Q
    |||| ||||    
T  26910430 aaattatag 26910438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 120 - 248
Target Start/End: Original strand, 34377002 - 34377130
Alignment:
Q  120 agggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaaatggt 219  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||||||||  |||||||  |||||||| ||||||||| || ||| |  ||||||||    
T  34377002 agggcaaaatgggaaatgcaccctaaaaatgatgaggtggcattaaccacaccccatcaattggaaattactaaaatgcccctcctaggggcaaaatggt 34377101  T
Q  220 aaaatcataggcatttaattttctaatat 248  Q
    |||||| |||  | |||||||| ||||||    
T  34377102 aaaatcctagaaacttaattttataatat 34377130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 122 - 236
Target Start/End: Complemental strand, 3024816 - 3024702
Alignment:
Q  122 ggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaaatggtaa 221  Q
    ||||||||||||||| ||||||||||||||||||||| || | ||||||| ||||||||| ||||||||||||||| |||| ||||    |||||| |||    
T  3024816 ggcaaaatgggaaatgcaccctaaaaatgatgaggtgacattgaccacacctcatcaataggaaattacaaaaatgtcctttttaggagcaaaatgataa 3024717  T
Q  222 aatcataggcattta 236  Q
    ||||||||| |||||    
T  3024716 aatcatagggattta 3024702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 120 - 222
Target Start/End: Original strand, 20998670 - 20998772
Alignment:
Q  120 agggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaaatggt 219  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||||  |||||||| |||||||| ||||||||| || ||| |  ||||||||    
T  20998670 agggcaaaatgggaaatgcaccctaaaattgatgaggtggcactaaccacaccccatcaataggaaattactaaaatgcccctcctaggggcaaaatggt 20998769  T
Q  220 aaa 222  Q
    |||    
T  20998770 aaa 20998772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 120 - 225
Target Start/End: Original strand, 33614057 - 33614162
Alignment:
Q  120 agggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaaatggt 219  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||| |||||||| ||||| ||| || ||   | ||||||||    
T  33614057 agggcaaaatgggaaattcaccctaaaaatgatgaggtggcactaaccacaccccatcaataggaaattactaaaatacccatcctaagaacaaaatggt 33614156  T
Q  220 aaaatc 225  Q
    ||||||    
T  33614157 aaaatc 33614162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 125 - 236
Target Start/End: Original strand, 29641090 - 29641199
Alignment:
Q  125 aaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaaatggtaaaat 224  Q
    ||||||||||||  ||| ||||||||||||||||||||||||||| |  ||||| ||  ||||||||||||| |||||||||| || |||||||||||||    
T  29641090 aaaatgggaaatgtaccataaaaatgatgaggtggcactaaccaccc--catcactagaaaattacaaaaatacccttcttagggacaaaatggtaaaat 29641187  T
Q  225 cataggcattta 236  Q
    |||||| |||||    
T  29641188 cataggaattta 29641199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 120 - 248
Target Start/End: Complemental strand, 2191625 - 2191498
Alignment:
Q  120 agggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaaatggt 219  Q
    ||||||||||||||||| |||||||||| ||||||||||||| |||||||||  |||||||| |||||||| ||||| ||||||  |  |  ||||||||    
T  2191625 agggcaaaatgggaaatgcaccctaaaa-tgatgaggtggcattaaccacaccccatcaataggaaattactaaaatacccttccaaagggcaaaatggt 2191527  T
Q  220 aaaatcataggcatttaattttctaatat 248  Q
    |||||| |||| ||||| |||| ||||||    
T  2191526 aaaatcctaggaatttacttttataatat 2191498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 120 - 248
Target Start/End: Original strand, 35542321 - 35542449
Alignment:
Q  120 agggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaaatggt 219  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||   ||| |||  |||||||| ||||||||| |   || |  ||||||||    
T  35542321 agggcaaaatgggaaatacaccctaaaaatgatgaggtggcactaaccacatcccataaattggaaattactaaaatgcccctaggaggggcaaaatggt 35542420  T
Q  220 aaaatcataggcatttaattttctaatat 248  Q
    |||||| |||| | |||||||| ||||||    
T  35542421 aaaatcctaggaacttaattttataatat 35542449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 125 - 236
Target Start/End: Original strand, 10514622 - 10514734
Alignment:
Q  125 aaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatc-atcaataagaaattacaaaaatgcccttcttagagataaaatggtaaaa 223  Q
    ||||||||||||  | | |||||||||||||||||||| ||||||||  | |  ||||| ||||||||||| |||||||| |||||| ||||||||||||    
T  10514622 aaaatgggaaatatatcataaaaatgatgaggtggcaccaaccacacccccaataataaaaaattacaaaactgcccttcatagagacaaaatggtaaaa 10514721  T
Q  224 tcataggcattta 236  Q
    ||||||| |||||    
T  10514722 tcataggaattta 10514734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 121 - 236
Target Start/End: Complemental strand, 19445520 - 19445407
Alignment:
Q  121 gggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaaatggta 220  Q
    |||||||||||||||| |||||||||| |||||||||||||||||||||||  ||||| || |||||||| ||||||||  | |||| |  |||||||||    
T  19445520 gggcaaaatgggaaatgcaccctaaaa-tgatgaggtggcactaaccacac-ccatcattaggaaattaccaaaatgcctcttttaggggcaaaatggta 19445423  T
Q  221 aaatcataggcattta 236  Q
    |||| ||||| |||||    
T  19445422 aaattatagggattta 19445407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 121 - 198
Target Start/End: Complemental strand, 21024964 - 21024887
Alignment:
Q  121 gggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgc 198  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||||    |||||||| |||||||| |||||||    
T  21024964 gggcaaaatggaaaatgcaccctaaaaatgatgaggtggcactaaccacttcccatcaataggaaattactaaaatgc 21024887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 120 - 200
Target Start/End: Original strand, 26324968 - 26325047
Alignment:
Q  120 agggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgccc 200  Q
    |||||||||||| |||| |||| ||||| ||||||||||||| ||||||||| ||||||||| |||||||| |||||||||    
T  26324968 agggcaaaatggaaaatgcaccataaaa-tgatgaggtggcattaaccacacctcatcaataggaaattaccaaaatgccc 26325047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 121 - 236
Target Start/End: Original strand, 3154273 - 3154387
Alignment:
Q  121 gggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaaatggta 220  Q
    |||||||||||||||| |||| |||||||||| |||| |||||||||||||  ||| |||| |||||||  ||||| |||||| |||    |||||||||    
T  3154273 gggcaaaatgggaaatgcaccttaaaaatgattaggt-gcactaaccacaccccattaataggaaattattaaaatacccttcataggagcaaaatggta 3154371  T
Q  221 aaatcataggcattta 236  Q
    |||||||||| |||||    
T  3154372 aaatcatagggattta 3154387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 116 - 236
Target Start/End: Original strand, 1855400 - 1855513
Alignment:
Q  116 ggtgagggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaaa 215  Q
    |||||||||||||||| |||| || |||||||||||| |||||||||       ||  |||||||| |||||||||||||||||| |||||  |  ||||    
T  1855400 ggtgagggcaaaatggaaaatgcatcctaaaaatgataaggtggcac-------accccatcaataggaaattacaaaaatgcccctcttatgggcaaaa 1855492  T
Q  216 tggtaaaatcataggcattta 236  Q
    ||||||||||||||| |||||    
T  1855493 tggtaaaatcatagggattta 1855513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 230
Target Start/End: Complemental strand, 33927467 - 33927415
Alignment:
Q  178 aataagaaattacaaaaatgcccttcttagagataaaatggtaaaatcatagg 230  Q
    ||||||||||||||||||||||| |||||| |  ||||||||| |||||||||    
T  33927467 aataagaaattacaaaaatgcccctcttaggggcaaaatggtataatcatagg 33927415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 96; Significance: 3e-47; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 121 - 248
Target Start/End: Original strand, 22118164 - 22118291
Alignment:
Q  121 gggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaaatggta 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||  |||||||||||||||||||||||| || |||||||||    
T  22118164 gggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacaccccatcaatagaaaattacaaaaatgcccttcttagggacaaaatggta 22118263  T
Q  221 aaatcataggcatttaattttctaatat 248  Q
    ||||||||| ||||||||||| ||||||    
T  22118264 aaatcatagacatttaattttataatat 22118291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 121 - 248
Target Start/End: Original strand, 36518317 - 36518443
Alignment:
Q  121 gggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaaatggta 220  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| | ||||||||||    
T  36518317 gggcaaaatggaaaatccacccaaaaaatgatgaggtggcactaaccacacc-catcaataagaaattacaaaaatgcccttcttaggggtaaaatggta 36518415  T
Q  221 aaatcataggcatttaattttctaatat 248  Q
    ||||||||||||||||||||| ||||||    
T  36518416 aaatcataggcatttaattttgtaatat 36518443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 121 - 248
Target Start/End: Complemental strand, 2775437 - 2775311
Alignment:
Q  121 gggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaaatggta 220  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||| ||||||||||||||||||||||||  || |||||||||    
T  2775437 gggcaaaatgggaaatccaccctaaaa-tgatgaggtggcactaaccacaccccatcaataggaaattacaaaaatgcccttcttaaggacaaaatggta 2775339  T
Q  221 aaatcataggcatttaattttctaatat 248  Q
    ||||||||||||||||||||| ||||||    
T  2775338 aaatcataggcatttaattttataatat 2775311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 125 - 248
Target Start/End: Complemental strand, 21351486 - 21351363
Alignment:
Q  125 aaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaaatggtaaaat 224  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||  |||||||| |||||||||||||||  | | |||| |  |||||||||| ||    
T  21351486 aaaatgggaaatgcaccctaaaaatgatgaggtggcactaaccacaccccatcaataggaaattacaaaaatgttccttttaggggcaaaatggtaatat 21351387  T
Q  225 cataggcatttaattttctaatat 248  Q
    ||||||||||||||||| ||||||    
T  21351386 cataggcatttaattttataatat 21351363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 120 - 248
Target Start/End: Complemental strand, 28970948 - 28970820
Alignment:
Q  120 agggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaaatggt 219  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||  |||||||| ||||||||| || ||| |  ||||||||    
T  28970948 agggcaaaatgggaaatgcaccctaaaaatgatgaggtggcactaaccacaccccatcaattggaaattactaaaatgcccctcataggggcaaaatggt 28970849  T
Q  220 aaaatcataggcatttaattttctaatat 248  Q
    |||||  |||| | |||||||| ||||||    
T  28970848 aaaattctaggaacttaattttataatat 28970820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 121 - 236
Target Start/End: Complemental strand, 53338956 - 53338842
Alignment:
Q  121 gggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaaatggta 220  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||||| ||  |||||||| |||||||||||||||||| |||||  |  |||||||||    
T  53338956 gggcaaaatgggaaatgcaccctaaaaatgatgaggtg-cactaaccaaaccccatcaataggaaattacaaaaatgcccctcttatgggcaaaatggta 53338858  T
Q  221 aaatcataggcattta 236  Q
    |||||||||| |||||    
T  53338857 aaatcataggaattta 53338842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 120 - 224
Target Start/End: Original strand, 15658331 - 15658435
Alignment:
Q  120 agggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaaatggt 219  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||||  ||||||||||||||||| ||||||||  || ||| |  ||||||||    
T  15658331 agggcaaaatgggaaattcaccctaaaaatgatgaggtgacactaaccacaccccatcaataagaaattactaaaatgcctctcctaggggcaaaatggt 15658430  T
Q  220 aaaat 224  Q
    |||||    
T  15658431 aaaat 15658435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 120 - 230
Target Start/End: Original strand, 54333887 - 54333997
Alignment:
Q  120 agggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaaatggt 219  Q
    ||||||||||||||||| |||||| |||||| ||||||||||||||||||||  |||||||| |||||||| ||||||||| || ||| |  ||||||||    
T  54333887 agggcaaaatgggaaatgcaccctgaaaatgttgaggtggcactaaccacaccccatcaataggaaattactaaaatgcccctcataggggcaaaatggt 54333986  T
Q  220 aaaatcatagg 230  Q
    |||||| ||||    
T  54333987 aaaatcctagg 54333997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 116 - 236
Target Start/End: Original strand, 56003426 - 56003546
Alignment:
Q  116 ggtgaggg-caaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaa 214  Q
    |||||||| ||||||||||||| |||| ||||||||||||||||||||||||||| |  |||||||| |||||||| ||||||| | || | | |  |||    
T  56003426 ggtgagggacaaaatgggaaatgcaccttaaaaatgatgaggtggcactaaccactccccatcaataggaaattactaaaatgctcctcct-ggggcaaa 56003524  T
Q  215 atggtaaaatcataggcattta 236  Q
    |||||||||||||||| |||||    
T  56003525 atggtaaaatcatagggattta 56003546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 121 - 236
Target Start/End: Original strand, 19834406 - 19834520
Alignment:
Q  121 gggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaaatggta 220  Q
    |||||||||| |||||  ||||||||||| ||||||||||| |||||| ||  |||||||| |||||||||||||||| | |||||   | |||||||||    
T  19834406 gggcaaaatgagaaatg-accctaaaaataatgaggtggcattaaccataccccatcaataggaaattacaaaaatgctcctcttaagaacaaaatggta 19834504  T
Q  221 aaatcataggcattta 236  Q
    |||||||||| |||||    
T  19834505 aaatcatagggattta 19834520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 122 - 248
Target Start/End: Complemental strand, 13625548 - 13625423
Alignment:
Q  122 ggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaaatggtaa 221  Q
    ||||||||||||||| || ||||||| |||||||||| ||||||||||||  |||||||| |||| ||| ||||||||  || ||  ||||||||| |||    
T  13625548 ggcaaaatgggaaatgcatcctaaaa-tgatgaggtgacactaaccacaccccatcaataggaaaatactaaaatgcctctcctaatgataaaatgataa 13625450  T
Q  222 aatcataggcatttaattttctaatat 248  Q
    ||||||| | ||||| |||| ||||||    
T  13625449 aatcataagaatttatttttataatat 13625423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 120 - 230
Target Start/End: Original strand, 7647861 - 7647971
Alignment:
Q  120 agggcaaaatgggaaatccaccctaaaa-atgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaaatgg 218  Q
    |||| |||||||||||| |||||||||| ||| ||||||| ||||||||| ||  |||||| |  ||||||| |||||| || || ||||||||||||||    
T  7647861 agggaaaaatgggaaatgcaccctaaaacatg-tgaggtgtcactaaccataccccatcaacagaaaattactaaaatgtccctcctagagataaaatgg 7647959  T
Q  219 taaaatcatagg 230  Q
    ||||||||||||    
T  7647960 taaaatcatagg 7647971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 200
Target Start/End: Original strand, 5276457 - 5276536
Alignment:
Q  120 agggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgccc 200  Q
    ||||||||||||||||| |||||| |||||||||| |||||| |||||||||  ||||||||  ||||||| |||||||||    
T  5276457 agggcaaaatgggaaatgcaccct-aaaatgatgatgtggcattaaccacaccccatcaatagaaaattactaaaatgccc 5276536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 196
Target Start/End: Original strand, 34060148 - 34060223
Alignment:
Q  120 agggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaat 196  Q
    |||| |||||||||||| |||||||||| ||||||||||||| |||||||||  |||||||| |||||||| |||||    
T  34060148 agggtaaaatgggaaatgcaccctaaaa-tgatgaggtggcattaaccacaccccatcaataggaaattactaaaat 34060223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 121 - 236
Target Start/End: Complemental strand, 17696718 - 17696604
Alignment:
Q  121 gggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaaatggta 220  Q
    ||||||||||| |||| || ||||||||||||||| |||||||||||||||  ||||||||  ||| ||| |||||| || || ||  |  |||||||||    
T  17696718 gggcaaaatggaaaatgcatcctaaaaatgatgagatggcactaaccacac-ccatcaatagaaaactactaaaatgtccctcctaagggcaaaatggta 17696620  T
Q  221 aaatcataggcattta 236  Q
    |||||||||| |||||    
T  17696619 aaatcatagggattta 17696604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 225
Target Start/End: Complemental strand, 36852900 - 36852817
Alignment:
Q  142 ctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaaatggtaaaatc 225  Q
    ||||||||||||||||||||| |||||||   |||||| | |||||||||||||||||| || ||  |  ||||||||||||||    
T  36852900 ctaaaaatgatgaggtggcaccaaccacatcccatcaacaggaaattacaaaaatgcccctcctaagggcaaaatggtaaaatc 36852817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 120 - 198
Target Start/End: Original strand, 14833131 - 14833208
Alignment:
Q  120 agggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgc 198  Q
    ||||||||||  |||||  ||||||||| ||||||||||||| |||||||||  |||||||| |||||||| |||||||    
T  14833131 agggcaaaataagaaatgtaccctaaaa-tgatgaggtggcattaaccacaccccatcaataggaaattactaaaatgc 14833208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 189
Target Start/End: Complemental strand, 23476240 - 23476172
Alignment:
Q  120 agggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaatta 189  Q
    ||||||||||||| ||| |||||||||| ||||||||||||| |||||||||  ||| |||| |||||||    
T  23476240 agggcaaaatggggaatgcaccctaaaa-tgatgaggtggcattaaccacaccccattaataggaaatta 23476172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 3e-38; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 121 - 248
Target Start/End: Original strand, 23524510 - 23524637
Alignment:
Q  121 gggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttctt-agagataaaatggt 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||  |||||||||||||||||||||| ||||  ||||||||    
T  23524510 gggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacaccccatcaatagaaaattacaaaaatgcccttcttaagag-caaaatggt 23524608  T
Q  220 aaaatcataggcatttaattttctaatat 248  Q
    |||||||| | ||||||||||| ||||||    
T  23524609 aaaatcatggacatttaattttataatat 23524637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 125 - 230
Target Start/End: Complemental strand, 7014927 - 7014822
Alignment:
Q  125 aaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaaatggtaaaat 224  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||||  |||||||| |||||||| ||||||||| ||||||||  |||||||||||||    
T  7014927 aaaatgggaaatgcaccctaaaaatgatgaggtgacactaaccacaccccatcaataggaaattactaaaatgcccctcttagaggcaaaatggtaaaat 7014828  T
Q  225 catagg 230  Q
     |||||    
T  7014827 tatagg 7014822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 120 - 196
Target Start/End: Complemental strand, 27273091 - 27273015
Alignment:
Q  120 agggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaat 196  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||| |||||||| |||||    
T  27273091 agggcaaaatgggaaatgcaccctaaaaatgatgaggtggcactaaccacaccccatcaataggaaattactaaaat 27273015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 121 - 236
Target Start/End: Original strand, 6480843 - 6480958
Alignment:
Q  121 gggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaaatggta 220  Q
    ||||||||||| |||| |||||||  |||||||||||| ||||||| ||||  |||||||| |||||||| ||||||||| |||||| |  |||||||||    
T  6480843 gggcaaaatggaaaatgcaccctatgaatgatgaggtgacactaactacaccccatcaataggaaattaccaaaatgcccatcttaggggcaaaatggta 6480942  T
Q  221 aaatcataggcattta 236  Q
    |||||||||| |||||    
T  6480943 aaatcatagggattta 6480958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 120 - 225
Target Start/End: Original strand, 36603755 - 36603859
Alignment:
Q  120 agggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaaatggt 219  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||||  ||||||||  ||||||| ||||||||| || || ||  ||||||||    
T  36603755 agggcaaaatgggaaatgcaccctaaaa-tgatgaggtggcactaaccacaccccatcaatagaaaattactaaaatgcccctcctaaaggcaaaatggt 36603853  T
Q  220 aaaatc 225  Q
    ||||||    
T  36603854 aaaatc 36603859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 120 - 225
Target Start/End: Complemental strand, 42781786 - 42781682
Alignment:
Q  120 agggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaaatggt 219  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||||||||  ||||||||  ||||||| ||||||||  || |||||  ||||||||    
T  42781786 agggcaaaatgggaaatgcacc-taaaaatgatgaggtggcactaaccacaccccatcaatagaaaattactaaaatgcctctcctagaggcaaaatggt 42781688  T
Q  220 aaaatc 225  Q
    ||||||    
T  42781687 aaaatc 42781682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 121 - 229
Target Start/End: Original strand, 42814522 - 42814630
Alignment:
Q  121 gggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcc-cttcttagagataaaatggt 219  Q
    |||||||||||||||| ||||||||||||||||||||| |||||| ||||| |||||||||| ||||||| ||||| || || || ||||  ||||||||    
T  42814522 gggcaaaatgggaaatgcaccctaaaaatgatgaggtgacactaatcacacctcatcaataaaaaattactaaaatacctctcctaagag-caaaatggt 42814620  T
Q  220 aaaatcatag 229  Q
    ||||||||||    
T  42814621 aaaatcatag 42814630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 123 - 248
Target Start/End: Complemental strand, 44597313 - 44597188
Alignment:
Q  123 gcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaaatggtaaa 222  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||   ||||||| ||||||||| || |||    |||||||||||    
T  44597313 gcaaaatgggaaatgcaccctaaaaatgatgaggtggcactaaccacaccccatcaattgaaaattactaaaatgcccctcctaggagcaaaatggtaaa 44597214  T
Q  223 atcataggcatttaattttctaatat 248  Q
    ||| |||  | |||||||| ||||||    
T  44597213 atcctagaaacttaattttataatat 44597188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 121 - 235
Target Start/End: Original strand, 3308499 - 3308612
Alignment:
Q  121 gggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaaatggta 220  Q
    ||||||||||  |||| |||||||||| |||||||||||||||||||||||  ||||||||||||||||  ||||||||| || |||    |||||||||    
T  3308499 gggcaaaatgaaaaatgcaccctaaaa-tgatgaggtggcactaaccacaccccatcaataagaaattattaaaatgcccatcataggcgcaaaatggta 3308597  T
Q  221 aaatcataggcattt 235  Q
    |||||||||| ||||    
T  3308598 aaatcatagggattt 3308612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 123 - 236
Target Start/End: Complemental strand, 38959327 - 38959214
Alignment:
Q  123 gcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttctta-gagataaaatggtaa 221  Q
    |||||||||||||| |||||||||||||||| |||||||||||| |||| |||||||||  ||||||| ||||| ||| || || |||  ||||||||||    
T  38959327 gcaaaatgggaaatgcaccctaaaaatgatgcggtggcactaacgacacctcatcaatagaaaattactaaaatacccctcatatgag-caaaatggtaa 38959229  T
Q  222 aatcataggcattta 236  Q
    ||||||||| |||||    
T  38959228 aatcatagggattta 38959214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 120 - 200
Target Start/End: Complemental strand, 5832089 - 5832010
Alignment:
Q  120 agggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgccc 200  Q
    ||||||||||||||||| ||||||||||||| |||| |||||||||||||||  |||||||| |||||||| |||||||||    
T  5832089 agggcaaaatgggaaattcaccctaaaaatggtgag-tggcactaaccacaccccatcaataggaaattactaaaatgccc 5832010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 124 - 199
Target Start/End: Complemental strand, 9757212 - 9757137
Alignment:
Q  124 caaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcc 199  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||  ||||||||  ||||||| ||||||||    
T  9757212 caaaataggaaattcaccctaaaaatgatgaggtggcactaaccacaccccatcaatagaaaattactaaaatgcc 9757137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 120 - 225
Target Start/End: Complemental strand, 30822833 - 30822729
Alignment:
Q  120 agggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaaatggt 219  Q
    ||||||||||||||||| |||||||||| ||||||||||||| |||||||||  |||||||| |||||||| ||||| ||| ||  || |  ||||||||    
T  30822833 agggcaaaatgggaaatgcaccctaaaa-tgatgaggtggcattaaccacaccccatcaataggaaattactaaaatacccctccaaggggcaaaatggt 30822735  T
Q  220 aaaatc 225  Q
    ||||||    
T  30822734 aaaatc 30822729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 120 - 200
Target Start/End: Original strand, 14082217 - 14082296
Alignment:
Q  120 agggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgccc 200  Q
    ||||||||||||||||| |||||||||| |||||||||| || |||||||||   |||||||||||||||| |||||||||    
T  14082217 agggcaaaatgggaaatgcaccctaaaa-tgatgaggtgacattaaccacacccgatcaataagaaattactaaaatgccc 14082296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 120 - 230
Target Start/End: Original strand, 37865160 - 37865269
Alignment:
Q  120 agggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaaatggt 219  Q
    |||||||||||||||||  ||||||||| ||||||||||||| |||||||||  |||||||| |||| ||| ||||||||| ||  || |  ||||||||    
T  37865160 agggcaaaatgggaaatgtaccctaaaa-tgatgaggtggcattaaccacaccccatcaataggaaactactaaaatgcccctccaaggggcaaaatggt 37865258  T
Q  220 aaaatcatagg 230  Q
    |||||| ||||    
T  37865259 aaaatcctagg 37865269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 120 - 199
Target Start/End: Original strand, 33427815 - 33427892
Alignment:
Q  120 agggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcc 199  Q
    |||||||||||| |||| |||||||||| ||||||||||||| |||||||||  |||||||| |||||||| ||||||||    
T  33427815 agggcaaaatgg-aaatgcaccctaaaa-tgatgaggtggcattaaccacaccccatcaataggaaattactaaaatgcc 33427892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 121 - 248
Target Start/End: Complemental strand, 17470906 - 17470780
Alignment:
Q  121 gggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaaatggta 220  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||| |||||||||||||||||| | |||  |  |||||||||    
T  17470906 gggcaaaatgggaaatgcaccctaaaaatgatgaggtggcactaaccacac-ccatcaataggaaattacaaaaatgccccttttaatggcaaaatggta 17470808  T
Q  221 aaatcataggcatttaattttctaatat 248  Q
    ||||||||||||||||||||| ||||||    
T  17470807 aaatcataggcatttaattttataatat 17470780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 121 - 248
Target Start/End: Original strand, 17582308 - 17582434
Alignment:
Q  121 gggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaaatggta 220  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||| |||||||||||||||||| | |||  |  |||||||||    
T  17582308 gggcaaaatgggaaatgcaccctaaaaatgatgaggtggcactaaccacac-ccatcaataggaaattacaaaaatgccccttttaatggcaaaatggta 17582406  T
Q  221 aaatcataggcatttaattttctaatat 248  Q
    ||||||||||||||||||||| ||||||    
T  17582407 aaatcataggcatttaattttataatat 17582434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 116 - 236
Target Start/End: Complemental strand, 19516752 - 19516631
Alignment:
Q  116 ggtgagggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccaca-catcatcaataagaaattacaaaaatgcccttcttagagataaa 214  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |  |||||||| |||||||||||||||||| | |||| | ||||    
T  19516752 ggtgagggcaaaatgggaaatgcaccataaaaatgatgaggtggcactaaccacacccccatcaataggaaattacaaaaatgccccttttaggggtaaa 19516653  T
Q  215 atggtaaaatcataggcattta 236  Q
    |||||||||||||||| |||||    
T  19516652 atggtaaaatcatagggattta 19516631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 121 - 248
Target Start/End: Complemental strand, 17466039 - 17465912
Alignment:
Q  121 gggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaaatggta 220  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||| |||||||||||||||  | | |||| |  |||||||||    
T  17466039 gggcaaaatgggaaatgcaccctaaaaatgatgaggtggcactaaccacaccccatcaataggaaattacaaaaatgttccttttaggggcaaaatggta 17465940  T
Q  221 aaatcataggcatttaattttctaatat 248  Q
    | |||||| |||||||||||| ||||||    
T  17465939 atatcataagcatttaattttataatat 17465912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 121 - 248
Target Start/End: Original strand, 17587175 - 17587302
Alignment:
Q  121 gggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaaatggta 220  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||| |||||||||||||||  | | |||| |  |||||||||    
T  17587175 gggcaaaatgggaaatgcaccctaaaaatgatgaggtggcactaaccacaccccatcaataggaaattacaaaaatgttccttttaggggcaaaatggta 17587274  T
Q  221 aaatcataggcatttaattttctaatat 248  Q
    | |||||| |||||||||||| ||||||    
T  17587275 atatcataagcatttaattttataatat 17587302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 121 - 236
Target Start/End: Complemental strand, 42684921 - 42684806
Alignment:
Q  121 gggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaaatggta 220  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||  ||||||||| ||||||| ||||||||| |  ||| |  |||||||||    
T  42684921 gggcaaaatgggaaatgcactctaaaaatgatgaggtggcactaaccacaccccatcaataaaaaattactaaaatgccccttataggggcaaaatggta 42684822  T
Q  221 aaatcataggcattta 236  Q
    || ||||||| |||||    
T  42684821 aattcatagggattta 42684806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 120 - 248
Target Start/End: Complemental strand, 14305550 - 14305423
Alignment:
Q  120 agggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaaatggt 219  Q
    ||||||||||||||||| ||||| |||||||||||||||||| |||||||||  |||||||| ||||| || ||||||||| ||  || |  ||||||||    
T  14305550 agggcaaaatgggaaatgcaccc-aaaaatgatgaggtggcattaaccacaccccatcaataggaaatcactaaaatgcccctccaaggggcaaaatggt 14305452  T
Q  220 aaaatcataggcatttaattttctaatat 248  Q
    |||||| |||| | ||| |||| ||||||    
T  14305451 aaaatcctagggacttacttttataatat 14305423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 120 - 230
Target Start/End: Original strand, 23771900 - 23772009
Alignment:
Q  120 agggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaaatggt 219  Q
    |||| ||||||| |||| |||||||||| ||||||||||||| |||||||||  |||||||| |||||||| ||||| ||| ||  || || ||||||||    
T  23771900 agggtaaaatggaaaatgcaccctaaaa-tgatgaggtggcattaaccacaccccatcaataggaaattactaaaatacccctccaagggacaaaatggt 23771998  T
Q  220 aaaatcatagg 230  Q
    |||||| ||||    
T  23771999 aaaatcctagg 23772009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 196
Target Start/End: Original strand, 8928740 - 8928815
Alignment:
Q  120 agggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaat 196  Q
    ||||||||||| ||||| |||||||||| ||||||||||||| |||||||||  |||||||| |||||||| |||||    
T  8928740 agggcaaaatgagaaatgcaccctaaaa-tgatgaggtggcattaaccacaccccatcaataggaaattactaaaat 8928815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 121 - 236
Target Start/End: Complemental strand, 5693091 - 5692977
Alignment:
Q  121 gggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaaatggta 220  Q
    ||||||||||| |||| |||||||||| |||||||||| ||| ||||||||  ||||||||  ||||||| ||||||||| || |||    |||||| ||    
T  5693091 gggcaaaatggaaaatgcaccctaaaa-tgatgaggtgacacaaaccacaccccatcaatagaaaattactaaaatgcccctcgtaggagcaaaatgata 5692993  T
Q  221 aaatcataggcattta 236  Q
    |||||||||| |||||    
T  5692992 aaatcataggaattta 5692977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 230
Target Start/End: Original strand, 42831168 - 42831214
Alignment:
Q  184 aaattacaaaaatgcccttcttagagataaaatggtaaaatcatagg 230  Q
    ||||||||||||||||| |||||| |  |||||||||||||||||||    
T  42831168 aaattacaaaaatgcccctcttaggggcaaaatggtaaaatcatagg 42831214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 121 - 248
Target Start/End: Complemental strand, 5250459 - 5250332
Alignment:
Q  121 gggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaaatggta 220  Q
    |||||||||||||||| |||| |||||||||| ||||||||||||||||||  |||||||| |||||||||||||||||| | |||| |  |||||||||    
T  5250459 gggcaaaatgggaaatgcaccataaaaatgataaggtggcactaaccacaccccatcaataggaaattacaaaaatgccccttttaggggcaaaatggta 5250360  T
Q  221 aaatcataggcatttaattttctaatat 248  Q
    ||||||||||||||||||||| ||||||    
T  5250359 aaatcataggcatttaattttataatat 5250332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 120 - 230
Target Start/End: Complemental strand, 26818217 - 26818107
Alignment:
Q  120 agggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaaatggt 219  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||| |||||||| ||||||||| || ||| |  ||||||||    
T  26818217 agggcaaaatgggaaatgcaccctaaaaatgatgaggtggcactaaccacaccccatcaataggaaattactaaaatgcccctcataggggcaaaatggt 26818118  T
Q  220 aaaatcatagg 230  Q
    |||||| ||||    
T  26818117 aaaatcctagg 26818107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 120 - 248
Target Start/End: Complemental strand, 11704675 - 11704547
Alignment:
Q  120 agggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaaatggt 219  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||  |||||||| ||||||||| || ||  |  ||||||||    
T  11704675 agggcaaaatgggaaatgcaccctaaaaatgatgaggtggcactaaccacaccccatcaattggaaattactaaaatgcccctcctaagggcaaaatggt 11704576  T
Q  220 aaaatcataggcatttaattttctaatat 248  Q
    |||||| |||| | |||||||| ||||||    
T  11704575 aaaatcctaggaacttaattttataatat 11704547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 120 - 200
Target Start/End: Original strand, 19132469 - 19132549
Alignment:
Q  120 agggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgccc 200  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||||||||  |||||||| |||||||| |||||||||    
T  19132469 agggcaaaataggaaattcaccctaaaaatgatgaggtggcactaaccacaccccatcaataggaaattactaaaatgccc 19132549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 121 - 236
Target Start/End: Original strand, 33665803 - 33665917
Alignment:
Q  121 gggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaaatggta 220  Q
    ||||||||||| |||| ||||||||||||||||||||| |||||||||||   ||||||||  ||||||||| ||||||| || ||| |  |||||||||    
T  33665803 gggcaaaatggaaaatgcaccctaaaaatgatgaggtg-cactaaccacatcccatcaatagaaaattacaagaatgcccctcatagggccaaaatggta 33665901  T
Q  221 aaatcataggcattta 236  Q
    ||||||||||||||||    
T  33665902 aaatcataggcattta 33665917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 120 - 225
Target Start/End: Complemental strand, 26825434 - 26825329
Alignment:
Q  120 agggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaaatggt 219  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||||||  |||||||  |||||||| ||||||||| || ||| |  |||||||     
T  26825434 agggcaaaatggaaaatgcaccctaaaaatgatgaggtggcactaaccacaccccatcaattggaaattactaaaatgcccctcctaggggcaaaatggc 26825335  T
Q  220 aaaatc 225  Q
    ||||||    
T  26825334 aaaatc 26825329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 121 - 196
Target Start/End: Original strand, 19170552 - 19170627
Alignment:
Q  121 gggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaat 196  Q
    |||||||||||||||| || ||||||||||||||||||||| ||||||||| |||||||||| ||||||| |||||    
T  19170552 gggcaaaatgggaaatgcatcctaaaaatgatgaggtggcattaaccacacctcatcaataaaaaattactaaaat 19170627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 126 - 248
Target Start/End: Complemental strand, 1466784 - 1466663
Alignment:
Q  126 aaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagat-aaaatggtaaaat 224  Q
    ||||||||||| |||||||||| | |||||||||||||||||||||  |||||||| |||||||| ||||||||| || || |||  |||||||||||||    
T  1466784 aaatgggaaatgcaccctaaaa-taatgaggtggcactaaccacaccccatcaataggaaattactaaaatgcccctccta-agagcaaaatggtaaaat 1466687  T
Q  225 cataggcatttaattttctaatat 248  Q
    |||| | ||||| |||| ||||||    
T  1466686 catatggatttatttttataatat 1466663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 184 - 237
Target Start/End: Complemental strand, 4810194 - 4810141
Alignment:
Q  184 aaattacaaaaatgcccttcttagagataaaatggtaaaatcataggcatttaa 237  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||| ||||||    
T  4810194 aaattataaaaatgcccttcttagaggtaaaatggtaaaatcatagggatttaa 4810141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 196
Target Start/End: Original strand, 16726644 - 16726719
Alignment:
Q  120 agggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaat 196  Q
    ||||||||||||||||| |||||||||| ||||||||||||| |||||||||  ||| |||| |||||||| |||||    
T  16726644 agggcaaaatgggaaatgcaccctaaaa-tgatgaggtggcattaaccacaccccattaataggaaattactaaaat 16726719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 197
Target Start/End: Complemental strand, 21094383 - 21094307
Alignment:
Q  120 agggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatg 197  Q
    |||||||||||| |||| |||||||||| ||||||||||||| |||||||||  ||| |||| |||||||| ||||||    
T  21094383 agggcaaaatggaaaatgcaccctaaaa-tgatgaggtggcattaaccacaccccataaataggaaattactaaaatg 21094307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 165
Target Start/End: Complemental strand, 33903982 - 33903937
Alignment:
Q  120 agggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaa 165  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||    
T  33903982 agggcaaaatgggaaatgcaccctaaaaatgatgatgtggcactaa 33903937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 227
Target Start/End: Original strand, 30598000 - 30598104
Alignment:
Q  121 gggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacat-catcaataagaaattacaaaaatgcccttcttagagataaaatggt 219  Q
    ||||||||||||||||  | ||||||| |||||||| | ||||||||||||   ||||||||||||||||| ||||||| | ||| || || ||||||||    
T  30598000 gggcaaaatgggaaatgtatcctaaaa-tgatgaggcgacactaaccacacccacatcaataagaaattactaaaatgctcctctaag-ga-aaaatggt 30598096  T
Q  220 aaaatcat 227  Q
    ||||||||    
T  30598097 aaaatcat 30598104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 241
Target Start/End: Original strand, 35288904 - 35288967
Alignment:
Q  178 aataagaaattacaaaaatgcccttcttagagataaaatggtaaaatcataggcatttaatttt 241  Q
    |||| |||||||||||||||||| |||||| |  ||||||||||||| ||||| | ||||||||    
T  35288904 aatatgaaattacaaaaatgcccctcttaggggcaaaatggtaaaattatagggaattaatttt 35288967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 170
Target Start/End: Complemental strand, 11445854 - 11445800
Alignment:
Q  116 ggtgagggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccaca 170  Q
    |||| ||||||||||||||||   || |||||||||||||||||||| |||||||    
T  11445854 ggtgggggcaaaatgggaaatatgccataaaaatgatgaggtggcaccaaccaca 11445800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 228
Target Start/End: Complemental strand, 15336449 - 15336396
Alignment:
Q  175 atcaataagaaattacaaaaatgcccttcttagagataaaatggtaaaatcata 228  Q
    ||||||| |||||||||||||||||| |||||   | |||||||||||||||||    
T  15336449 atcaataggaaattacaaaaatgcccctcttaagaacaaaatggtaaaatcata 15336396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 3e-35; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 121 - 248
Target Start/End: Complemental strand, 17937118 - 17936991
Alignment:
Q  121 gggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaaatggta 220  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||||||  |||||||| |||||||||||||||||| | ||||    |||||||||    
T  17937118 gggcaaaatgggaaatgcaccctaaaaataatgaggtggcactaaccacaccccatcaataggaaattacaaaaatgccccttttaggagcaaaatggta 17937019  T
Q  221 aaatcataggcatttaattttctaatat 248  Q
    |||| |||||||||||||||| ||||||    
T  17937018 aaattataggcatttaattttataatat 17936991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 121 - 248
Target Start/End: Complemental strand, 35039231 - 35039104
Alignment:
Q  121 gggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaaatggta 220  Q
    |||||||||||||||| |||| |||||||||| ||||||||||||||||||  |||||||| |||||||||||||||||| | |||| |  |||||||||    
T  35039231 gggcaaaatgggaaatgcaccttaaaaatgattaggtggcactaaccacaccccatcaataggaaattacaaaaatgccccttttaggggcaaaatggta 35039132  T
Q  221 aaatcataggcatttaattttctaatat 248  Q
    | ||||||||||||||||||| ||||||    
T  35039131 atatcataggcatttaattttataatat 35039104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 125 - 236
Target Start/End: Complemental strand, 4422422 - 4422312
Alignment:
Q  125 aaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaaatggtaaaat 224  Q
    |||||||||||| || |||||||||||||||||||||||||||||||  ||||||| || |||||| |||||||||||| ||||||||||||||||||||    
T  4422422 aaaatgggaaatgcatcctaaaaatgatgaggtggcactaaccacactccatcaat-aggaattactaaaatgcccttcctagagataaaatggtaaaat 4422324  T
Q  225 cataggcattta 236  Q
    ||| || |||||    
T  4422323 cattgggattta 4422312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 121 - 248
Target Start/End: Complemental strand, 18310144 - 18310018
Alignment:
Q  121 gggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttctta-gagataaaatggt 219  Q
    |||||||||||||||| |||||||||| |||||||||||||||||||||||  |||||||| |||||||||||||||||  ||||| |||  ||||| ||    
T  18310144 gggcaaaatgggaaatgcaccctaaaa-tgatgaggtggcactaaccacaccccatcaataggaaattacaaaaatgcctctcttatgag-caaaatagt 18310047  T
Q  220 aaaatcataggcatttaattttctaatat 248  Q
    ||||| |||||||||||||||| ||||||    
T  18310046 aaaattataggcatttaattttataatat 18310018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 120 - 225
Target Start/End: Original strand, 11955917 - 11956022
Alignment:
Q  120 agggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaaatggt 219  Q
    ||||||||||||||||| || |||||||||||||||||||||||||||||||  |||||||| |||||||| ||||||||| |  ||| |  ||||||||    
T  11955917 agggcaaaatgggaaattcatcctaaaaatgatgaggtggcactaaccacaccccatcaataggaaattactaaaatgccccttctaggggcaaaatggt 11956016  T
Q  220 aaaatc 225  Q
    ||||||    
T  11956017 aaaatc 11956022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 120 - 200
Target Start/End: Original strand, 1076706 - 1076785
Alignment:
Q  120 agggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgccc 200  Q
    ||||||||||||||||| |||||||||| ||||||||||||| |||||||||  ||||||||||||||||| |||||||||    
T  1076706 agggcaaaatgggaaatgcaccctaaaa-tgatgaggtggcattaaccacaccccatcaataagaaattactaaaatgccc 1076785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 120 - 248
Target Start/End: Complemental strand, 2517793 - 2517666
Alignment:
Q  120 agggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaaatggt 219  Q
    ||||||||||||||||| ||||| |||| ||||||||||||| |||||||||  ||||||||  ||||||| ||||||||| ||  |||| |||||||||    
T  2517793 agggcaaaatgggaaatgcaccccaaaa-tgatgaggtggcattaaccacaccccatcaatagaaaattactaaaatgcccctccaagaggtaaaatggt 2517695  T
Q  220 aaaatcataggcatttaattttctaatat 248  Q
    |||||| |||| | ||| |||| ||||||    
T  2517694 aaaatcctaggaacttacttttataatat 2517666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 120 - 200
Target Start/End: Complemental strand, 33802574 - 33802496
Alignment:
Q  120 agggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgccc 200  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||||||||  ||||||||||||||||| |||||||||    
T  33802574 agggcaaaatgggaaatgcacc-taaaaatgatgaggtggcactaaccacac-ccatcaataagaaattactaaaatgccc 33802496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 120 - 230
Target Start/End: Complemental strand, 10269514 - 10269404
Alignment:
Q  120 agggcaaaatgggaaatccaccctaaaa-atgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaaatgg 218  Q
    |||||||||||||||||  ||||||||| ||| ||||||||||||||||| |   ||| |||| |||||||| ||||||||| || ||| || |||||||    
T  10269514 agggcaaaatgggaaatgaaccctaaaacatg-tgaggtggcactaaccatattccataaataggaaattactaaaatgcccctcctagggacaaaatgg 10269416  T
Q  219 taaaatcatagg 230  Q
    ||||||||||||    
T  10269415 taaaatcatagg 10269404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 200
Target Start/End: Original strand, 14891792 - 14891871
Alignment:
Q  120 agggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgccc 200  Q
    ||||||||||||||||| |||||||||| ||||||| ||| | |||||||||  |||||||| |||||||| |||||||||    
T  14891792 agggcaaaatgggaaatgcaccctaaaa-tgatgagatggaattaaccacaccccatcaataggaaattactaaaatgccc 14891871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 200
Target Start/End: Complemental strand, 21796148 - 21796069
Alignment:
Q  120 agggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgccc 200  Q
    ||||||||||||||||| |||| ||||| ||||||||||||| |||||||||  |||||||| |||| ||| |||||||||    
T  21796148 agggcaaaatgggaaatgcaccataaaa-tgatgaggtggcattaaccacaccccatcaataggaaactactaaaatgccc 21796069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 120 - 199
Target Start/End: Complemental strand, 34852914 - 34852837
Alignment:
Q  120 agggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcc 199  Q
    |||||||||||| |||| |||||||||| ||||||||||||| |||||||||  ||||||||| ||||||| ||||||||    
T  34852914 agggcaaaatggaaaatgcaccctaaaa-tgatgaggtggcattaaccacac-ccatcaataaaaaattactaaaatgcc 34852837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 5e-34; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 121 - 248
Target Start/End: Complemental strand, 44404798 - 44404669
Alignment:
Q  121 gggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccaca-catcatcaataagaaattacaaaaatg-cccttcttagagataaaatgg 218  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| |  |||||||| |||||||||||||||  || |||||| |  |||||||    
T  44404798 gggcaaaatgggaaatgcaccctaaaaatgatgaggtggcactaaccacacccccatcaataggaaattacaaaaatgttccctcttagggccaaaatgg 44404699  T
Q  219 taaaatcataggcatttaattttctaatat 248  Q
    ||||||||||||||||||||||| ||||||    
T  44404698 taaaatcataggcatttaattttataatat 44404669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 120 - 236
Target Start/End: Complemental strand, 27792865 - 27792749
Alignment:
Q  120 agggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaaatggt 219  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||||||||  |||||| | |||||||||||||||| | ||||||||  ||||||||    
T  27792865 agggcaaaatgggaaatgcaccataaaaatgatgaggtggcactaaccacaccccatcaacaggaaattacaaaaatgctcctcttagaggcaaaatggt 27792766  T
Q  220 aaaatcataggcattta 236  Q
    ||||||||||| |||||    
T  27792765 aaaatcatagggattta 27792749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 121 - 236
Target Start/End: Original strand, 38848096 - 38848211
Alignment:
Q  121 gggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaaatggta 220  Q
    |||||||||| ||||| |||||||||||||||||||||||||||| ||||| ||||||||| |||||||  ||||||||| |  || |||||||||||||    
T  38848096 gggcaaaatgagaaatgcaccctaaaaatgatgaggtggcactaagcacacctcatcaataggaaattattaaaatgccccttctaaagataaaatggta 38848195  T
Q  221 aaatcataggcattta 236  Q
    ||||||||||||||||    
T  38848196 aaatcataggcattta 38848211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 121 - 236
Target Start/End: Complemental strand, 9261401 - 9261286
Alignment:
Q  121 gggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaaatggta 220  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||| ||  |||||||| |||||||| |||||| ||||| ||| | ||||||| ||    
T  9261401 gggcaaaatgggaaatgaaccctaaaaatgatgaggtggcactaaccataccccatcaataggaaattactaaaatgtccttcgtaggggtaaaatgata 9261302  T
Q  221 aaatcataggcattta 236  Q
    |||||||||| |||||    
T  9261301 aaatcatagggattta 9261286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 120 - 230
Target Start/End: Complemental strand, 34684253 - 34684143
Alignment:
Q  120 agggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaaatggt 219  Q
    ||||||||||| ||||| ||||||||||||||||||||| ||||||||||||  |||||||| |||||||| ||||||||| || ||  |  ||||||||    
T  34684253 agggcaaaatgagaaattcaccctaaaaatgatgaggtgacactaaccacaccccatcaataggaaattactaaaatgcccatcctaagggcaaaatggt 34684154  T
Q  220 aaaatcatagg 230  Q
    |||||| ||||    
T  34684153 aaaatcttagg 34684143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 120 - 200
Target Start/End: Complemental strand, 18810911 - 18810832
Alignment:
Q  120 agggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgccc 200  Q
    ||||||||||||||||| |||||||||| ||||||||||||| |||||||||  |||||||| |||||||| |||||||||    
T  18810911 agggcaaaatgggaaatgcaccctaaaa-tgatgaggtggcattaaccacaccccatcaataggaaattactaaaatgccc 18810832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 120 - 196
Target Start/End: Original strand, 52525178 - 52525253
Alignment:
Q  120 agggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaat 196  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||||||  |||||||| |||||||| |||||    
T  52525178 agggcaaaatgggaaattcaccctaaaaatgatgaggtggcgctaaccacac-ccatcaataggaaattactaaaat 52525253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 120 - 200
Target Start/End: Original strand, 41833332 - 41833411
Alignment:
Q  120 agggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgccc 200  Q
    ||||||||||||||||| || ||||||| ||||||||||||| |||||||||  |||||||| |||||||| |||||||||    
T  41833332 agggcaaaatgggaaatgcatcctaaaa-tgatgaggtggcattaaccacaccccatcaataggaaattaccaaaatgccc 41833411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 248
Target Start/End: Complemental strand, 31616349 - 31616221
Alignment:
Q  120 agggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccaca-catcatcaataagaaattacaaaaatgcccttcttagagataaaatgg 218  Q
    |||||||||||| ||||  | ||||||| ||||||||||||| |||||||| |  |||||||| |||||||| ||||||||| ||  || |  |||||||    
T  31616349 agggcaaaatggaaaatgtagcctaaaa-tgatgaggtggcattaaccacacccccatcaataggaaattactaaaatgcccctccaaggggcaaaatgg 31616251  T
Q  219 taaaatcataggcatttaattttctaatat 248  Q
    ||||||| |||| | ||| |||| ||||||    
T  31616250 taaaatcctagggacttacttttataatat 31616221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 230
Target Start/End: Complemental strand, 17668782 - 17668730
Alignment:
Q  178 aataagaaattacaaaaatgcccttcttagagataaaatggtaaaatcatagg 230  Q
    |||| |||||||||||||||||| ||||| ||  |||||||||||||||||||    
T  17668782 aataggaaattacaaaaatgcccctcttaaaggcaaaatggtaaaatcatagg 17668730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 241
Target Start/End: Original strand, 12249182 - 12249245
Alignment:
Q  178 aataagaaattacaaaaatgcccttcttagagataaaatggtaaaatcataggcatttaatttt 241  Q
    |||| |||||||||||||||||| |||||| |  ||||||||||||| ||||| | ||||||||    
T  12249182 aatatgaaattacaaaaatgcccctcttaggggcaaaatggtaaaattatagggaattaatttt 12249245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 225
Target Start/End: Original strand, 41966509 - 41966614
Alignment:
Q  120 agggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatc-atcaataagaaattacaaaaatgcccttcttagagataaaatgg 218  Q
    ||||||||||  ||||| |||||||||| ||||||||||||| |||||||||  | ||||||| |||||||| ||||| ||| ||  |  || |||||||    
T  41966509 agggcaaaatatgaaatgcaccctaaaa-tgatgaggtggcattaaccacacccctatcaataggaaattactaaaatacccctccaaaggacaaaatgg 41966607  T
Q  219 taaaatc 225  Q
    |||||||    
T  41966608 taaaatc 41966614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 230
Target Start/End: Complemental strand, 36677692 - 36677640
Alignment:
Q  178 aataagaaattacaaaaatgcccttcttagagataaaatggtaaaatcatagg 230  Q
    |||| |||||||||||||| ||| |||||| |  |||||||||||||||||||    
T  36677692 aatatgaaattacaaaaatacccctcttaggggcaaaatggtaaaatcatagg 36677640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 116 - 236
Target Start/End: Original strand, 11331458 - 11331579
Alignment:
Q  116 ggtgaggg-caaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaa 214  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||  ||||||||  ||||||||||||||||| ||||||    |||    
T  11331458 ggtgagggacaaaatgggaaatgcaccctaaaaatgatgaggtggcactaaccacaccccatcaatagaaaattacaaaaatgcccctcttaggagcaaa 11331557  T
Q  215 atggtaaaatcataggcattta 236  Q
    |||||||||||||||| |||||    
T  11331558 atggtaaaatcatagggattta 11331579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 120 - 248
Target Start/End: Complemental strand, 16339422 - 16339295
Alignment:
Q  120 agggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaaatggt 219  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| |  |||||||  |||||||| ||||||||| || ||| || ||||||||    
T  16339422 agggcaaaatgggaaatgcaccctaaaaatgatgaggtggcactaaccac-ccccatcaattggaaattactaaaatgcccctcctagggacaaaatggt 16339324  T
Q  220 aaaatcataggcatttaattttctaatat 248  Q
    |||||| |||| |||||||||| ||||||    
T  16339323 aaaatcctaggaatttaattttataatat 16339295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 121 - 236
Target Start/End: Complemental strand, 51245008 - 51244893
Alignment:
Q  121 gggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaaatggta 220  Q
    ||||||||||  |||| ||||||||||||||||||||||||||||||||||  |||||||| |||||||| ||||||||| || |||||  |||||||||    
T  51245008 gggcaaaatgaaaaattcaccctaaaaatgatgaggtggcactaaccacaccccatcaataggaaattactaaaatgcccctcctagaggcaaaatggta 51244909  T
Q  221 aaatcataggcattta 236  Q
    || ||||||| |||||    
T  51244908 aattcatagggattta 51244893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 121 - 248
Target Start/End: Complemental strand, 50736748 - 50736622
Alignment:
Q  121 gggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaaatggta 220  Q
    ||||||||||| |||| |||||||||||||||||||||||| |||||||||  |||||||| |||||||||||||||||| | |||  |  |||||  ||    
T  50736748 gggcaaaatggaaaatgcaccctaaaaatgatgaggtggcaataaccacac-ccatcaataggaaattacaaaaatgccccttttaagggcaaaattata 50736650  T
Q  221 aaatcataggcatttaattttctaatat 248  Q
    ||||||||| ||||||||||| ||||||    
T  50736649 aaatcatagacatttaattttataatat 50736622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 121 - 248
Target Start/End: Original strand, 50776107 - 50776233
Alignment:
Q  121 gggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaaatggta 220  Q
    ||||||||||| |||| |||||||||||||||||||||||| |||||||||  |||||||| |||||||||||||||||| | |||  |  |||||  ||    
T  50776107 gggcaaaatggaaaatgcaccctaaaaatgatgaggtggcaataaccacac-ccatcaataggaaattacaaaaatgccccttttaagggcaaaattata 50776205  T
Q  221 aaatcataggcatttaattttctaatat 248  Q
    ||||||||| ||||||||||| ||||||    
T  50776206 aaatcatagacatttaattttataatat 50776233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 125 - 235
Target Start/End: Original strand, 52857723 - 52857834
Alignment:
Q  125 aaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatc-atcaataagaaattacaaaaatgcccttcttagagataaaatggtaaaa 223  Q
    ||||| |||||| |||||||||||||||||||||||| |||||||||  | ||||||| |||||||||||||||||| |||||| |  ||||||||||||    
T  52857723 aaaataggaaatgcaccctaaaaatgatgaggtggcattaaccacacccccatcaataggaaattacaaaaatgcccctcttaggggcaaaatggtaaaa 52857822  T
Q  224 tcataggcattt 235  Q
    ||||||| ||||    
T  52857823 tcataggaattt 52857834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 120 - 225
Target Start/End: Original strand, 35091479 - 35091584
Alignment:
Q  120 agggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaaatggt 219  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||||||||  |||||||| |||||||| ||||| ||| || ||| |  ||||||||    
T  35091479 agggcaaaatgggaaatgcaccataaaaatgatgaggtggcactaaccacaccccatcaataggaaattactaaaatacccctcataggggcaaaatggt 35091578  T
Q  220 aaaatc 225  Q
    ||||||    
T  35091579 aaaatc 35091584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 120 - 248
Target Start/End: Original strand, 31372027 - 31372154
Alignment:
Q  120 agggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaaatggt 219  Q
    ||||||||||||||||| |||||||||| |||||||||| || |||||||||  |||||||| |||||||| ||||||||| ||| ||||  ||||||||    
T  31372027 agggcaaaatgggaaatgcaccctaaaa-tgatgaggtgacattaaccacaccccatcaataggaaattactaaaatgcccctctaagaggcaaaatggt 31372125  T
Q  220 aaaatcataggcatttaattttctaatat 248  Q
    |||||| |||| | ||| |||| ||||||    
T  31372126 aaaatcctagggacttacttttataatat 31372154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 120 - 225
Target Start/End: Original strand, 50767723 - 50767828
Alignment:
Q  120 agggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaaatggt 219  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||||||  |||||||  |||||||| ||||||||| || ||| |  |||||||     
T  50767723 agggcaaaatggaaaatgcaccctaaaaatgatgaggtggcactaaccacaccccatcaattggaaattactaaaatgcccctcctaggggcaaaatggc 50767822  T
Q  220 aaaatc 225  Q
    ||||||    
T  50767823 aaaatc 50767828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 122 - 230
Target Start/End: Complemental strand, 30814555 - 30814447
Alignment:
Q  122 ggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaaatggtaa 221  Q
    |||||||||| |||| ||||||||||||||||||||||||  ||||| ||  |||||||| |||||||| ||||| |||||| |||    ||||||||||    
T  30814555 ggcaaaatggaaaatacaccctaaaaatgatgaggtggcagcaaccaaaccccatcaataggaaattactaaaatacccttcctaggagcaaaatggtaa 30814456  T
Q  222 aatcatagg 230  Q
    |||||||||    
T  30814455 aatcatagg 30814447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 121 - 236
Target Start/End: Complemental strand, 54508891 - 54508776
Alignment:
Q  121 gggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatg-cccttcttagagataaaatggt 219  Q
    ||||||||||  |||| |||||| |||||||||||||| ||||||||||||  |||||||  ||||||||||||||| || |||| | ||  ||||||||    
T  54508891 gggcaaaatgaaaaatgcaccctgaaaatgatgaggtgacactaaccacaccccatcaattggaaattacaaaaatgtccattctaaaag-caaaatggt 54508793  T
Q  220 aaaatcataggcattta 236  Q
    ||||||||||| |||||    
T  54508792 aaaatcatagggattta 54508776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 236
Target Start/End: Complemental strand, 49109729 - 49109615
Alignment:
Q  121 gggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatg-cccttcttagagataaaatggt 219  Q
    |||||||||||||||| || |||||||||||||| ||||||| ||||||||   || |||| |||||||| |||||| ||||||| || |  ||||||||    
T  49109729 gggcaaaatgggaaatgcatcctaaaaatgatga-gtggcaccaaccacactctattaataggaaattactaaaatgacccttctaag-ggcaaaatggt 49109632  T
Q  220 aaaatcataggcattta 236  Q
    ||||||||||| |||||    
T  49109631 aaaatcatagggattta 49109615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 120 - 200
Target Start/End: Original strand, 6108529 - 6108607
Alignment:
Q  120 agggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgccc 200  Q
    ||||||||||||||||| |||||| ||||||||||||||||| | |||||||  ||| |||| |||||||| |||||||||    
T  6108529 agggcaaaatgggaaatgcaccct-aaaatgatgaggtggca-ttaccacaccccattaataggaaattactaaaatgccc 6108607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 120 - 230
Target Start/End: Original strand, 23424 - 23534
Alignment:
Q  120 agggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaaatggt 219  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||||||  |||||||| |||||||| ||||||||| || ||| |  ||||||||    
T  23424 agggcaaaatggaaaattcaccctaaaaatgatgaggtggcactaaccacaccccatcaataggaaattactaaaatgcccctcctaggggcaaaatggt 23523  T
Q  220 aaaatcatagg 230  Q
    |||||| ||||    
T  23524 aaaatcctagg 23534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 121 - 236
Target Start/End: Original strand, 18230 - 18344
Alignment:
Q  121 gggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaaatggta 220  Q
    |||||||||||||||| |||||||||| ||||||||||||||||| |||||  |||||||| |||||||  ||||||||| |  || ||| |||||||||    
T  18230 gggcaaaatgggaaatgcaccctaaaa-tgatgaggtggcactaagcacaccccatcaataggaaattattaaaatgccccttctaaagacaaaatggta 18328  T
Q  221 aaatcataggcattta 236  Q
    ||||||||||||||||    
T  18329 aaatcataggcattta 18344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 120 - 248
Target Start/End: Original strand, 5871 - 5999
Alignment:
Q  120 agggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaaatggt 219  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||||  |||||||  |||||| | ||||| ||| || ||| |  ||||||||    
T  5871 agggcaaaatgagaaatgcaccctaaaaatgatgaggtggcactaaccacaccccatcaattggaaattcctaaaattcccctcctaggggcaaaatggt 5970  T
Q  220 aaaatcataggcatttaattttctaatat 248  Q
    |||||| |||| | |||||||| ||||||    
T  5971 aaaatcctaggaacttaattttataatat 5999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 124 - 203
Target Start/End: Complemental strand, 9665 - 9587
Alignment:
Q  124 caaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttc 203  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||||  |||||||| |||||||| ||||||||||||    
T  9665 caaaatgggaaatgcaccctaaaaatgatgaggtgacactaaccacac-ccatcaataggaaattactaaaatgcccttc 9587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 248
Target Start/End: Complemental strand, 1993 - 1867
Alignment:
Q  120 agggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgcccttcttagagataaaatggt 219  Q
    ||||||||||||||||| |||| ||||| |||||||||| || |||||||||  ||||||||  ||||||| ||||||||| ||  || || ||||||||    
T  1993 agggcaaaatgggaaatgcaccataaaa-tgatgaggtgacattaaccacacc-catcaatagaaaattactaaaatgcccctccaagggacaaaatggt 1896  T
Q  220 aaaatcataggcatttaattttctaatat 248  Q
    |||||| |||| | ||| |||| ||||||    
T  1895 aaaatcctagggacttacttttataatat 1867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 120 - 198
Target Start/End: Original strand, 29965 - 30042
Alignment:
Q  120 agggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgc 198  Q
    ||||||||||  |||||  ||||||||| ||||||||||||| |||||||||  |||||||| |||||||| |||||||    
T  29965 agggcaaaataagaaatgtaccctaaaa-tgatgaggtggcattaaccacaccccatcaataggaaattactaaaatgc 30042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 230
Target Start/End: Complemental strand, 94436 - 94390
Alignment:
Q  184 aaattacaaaaatgcccttcttagagataaaatggtaaaatcatagg 230  Q
    ||||||||||||||||| |||||| | ||||||||||||||||||||    
T  94436 aaattacaaaaatgcccctcttaggggtaaaatggtaaaatcatagg 94390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 120 - 198
Target Start/End: Complemental strand, 6568 - 6491
Alignment:
Q  120 agggcaaaatgggaaatccaccctaaaaatgatgaggtggcactaaccacacatcatcaataagaaattacaaaaatgc 198  Q
    ||||||||||  |||||  ||||||||| ||||||||||||| |||||||||  |||||||| |||||||| |||||||    
T  6568 agggcaaaataagaaatgtaccctaaaa-tgatgaggtggcattaaccacaccccatcaataggaaattactaaaatgc 6491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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