View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5731_low_18 (Length: 214)

Name: NF5731_low_18
Description: NF5731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5731_low_18
NF5731_low_18
[»] chr1 (5 HSPs)
chr1 (13-196)||(47051846-47052029)
chr1 (13-196)||(19657782-19657967)
chr1 (13-197)||(14648962-14649147)
chr1 (13-197)||(14658752-14658937)
chr1 (151-197)||(34899532-34899578)
[»] chr5 (3 HSPs)
chr5 (13-196)||(42784188-42784370)
chr5 (12-61)||(5520741-5520790)
chr5 (127-191)||(5520832-5520896)
[»] chr8 (3 HSPs)
chr8 (13-196)||(4707799-4707981)
chr8 (13-191)||(15998366-15998543)
chr8 (21-87)||(26918594-26918659)
[»] chr2 (8 HSPs)
chr2 (13-196)||(809992-810175)
chr2 (13-196)||(27560869-27561054)
chr2 (13-196)||(37457310-37457495)
chr2 (127-195)||(45330446-45330514)
chr2 (127-195)||(31712763-31712831)
chr2 (127-195)||(39156280-39156348)
chr2 (13-61)||(44314709-44314757)
chr2 (13-61)||(44322888-44322936)
[»] chr3 (3 HSPs)
chr3 (13-196)||(5735595-5735778)
chr3 (13-196)||(5772707-5772890)
chr3 (142-194)||(7688223-7688276)
[»] chr4 (1 HSPs)
chr4 (13-196)||(5742846-5743031)
[»] scaffold0713 (1 HSPs)
scaffold0713 (13-197)||(3792-3978)
[»] chr6 (7 HSPs)
chr6 (13-197)||(27525923-27526109)
chr6 (127-195)||(13143638-13143706)
chr6 (127-195)||(17354296-17354364)
chr6 (13-61)||(22012782-22012830)
chr6 (127-195)||(27682911-27682979)
chr6 (127-195)||(27690232-27690300)
chr6 (127-195)||(30229985-30230053)
[»] chr7 (3 HSPs)
chr7 (13-87)||(34378185-34378259)
chr7 (142-190)||(6023852-6023900)
chr7 (13-61)||(28802405-28802453)
[»] scaffold2168 (1 HSPs)
scaffold2168 (13-61)||(10-58)


Alignment Details
Target: chr1 (Bit Score: 168; Significance: 3e-90; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 13 - 196
Target Start/End: Original strand, 47051846 - 47052029
Alignment:
Q  13 caataatattttctcatgaatcagaaactcattctaccacttctctaactagagttaaccatgaaatccctatattatccattctaacctacaaaataat 112  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47051846 caataatattttctcatgaattagaaactcattctaccacttctctaactagagttaaccatgaaatccctatattatccattctaacctacaaaataat 47051945  T
Q  113 ttctaaacgaatcttcatgtgtaaataatcactaattgaattgtaagttgataaatatacttcaaagagtctcaatgagcaact 196  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  47051946 ttctaaacgaatcatcatgtgtaaataaacactaattgaattgtaagttgataaatatacctcaaagagtctcaatgagcaact 47052029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 13 - 196
Target Start/End: Original strand, 19657782 - 19657967
Alignment:
Q  13 caataatattttctcatgaatcagaaactcattctaccacttctctaactagagttaaccatgaaatccctatattatccattctaacctacaaaataat 112  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  19657782 caataatattttctcatgaattagaaactcattctaccacttctctaactagagttaaccataaaatccctacattatccattctaacctacaaaataat 19657881  T
Q  113 ttctaaacgaatcttcatgtgtaaataatcactaatt--gaattgtaagttgataaatatacttcaaagagtctcaatgagcaact 196  Q
    |||||||||||||||||||||||||||| ||||||||  ||||||||||| ||||||||||| |||||||||||||||||||||||    
T  19657882 ttctaaacgaatcttcatgtgtaaataaacactaattgagaattgtaagtcgataaatatacctcaaagagtctcaatgagcaact 19657967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 13 - 197
Target Start/End: Complemental strand, 14649147 - 14648962
Alignment:
Q  13 caataatattttctcatgaatcagaaactcattctaccacttctctaactagagttaaccatgaaatccctatattatccattctaacct-acaaaataa 111  Q
    |||||||||| |||||||||| ||||||||||||||| ||||||||||||| |||||||||  || |||| | |  ||| | ||||| || | ||| |||    
T  14649147 caataatattctctcatgaattagaaactcattctactacttctctaactatagttaaccacaaattccccaaacaatctaatctaatctcaaaaattaa 14649048  T
Q  112 tttctaaacgaatcttcatgtgtaaataatcactaattgaattgtaagttgataaatatacttcaaag-agtctcaatgagcaactt 197  Q
    ||||| ||| | |  |||||| ||||||  |||||||||| |||||||||||||||||||| || ||| ||||||||||| ||||||    
T  14649047 tttct-aacaactaatcatgtctaaatatgcactaattgagttgtaagttgataaatatacctcgaagaagtctcaatgaacaactt 14648962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 13 - 197
Target Start/End: Complemental strand, 14658937 - 14658752
Alignment:
Q  13 caataatattttctcatgaatcagaaactcattctaccacttctctaactagagttaaccatgaaatccctatattatccattctaacct-acaaaataa 111  Q
    |||||||||| |||||||||| ||||||||||||||| ||||||||||||| |||||||||  || |||| | |  ||| | ||||| || | ||| |||    
T  14658937 caataatattctctcatgaattagaaactcattctactacttctctaactatagttaaccacaaattccccaaacaatctaatctaatctcaaaaattaa 14658838  T
Q  112 tttctaaacgaatcttcatgtgtaaataatcactaattgaattgtaagttgataaatatacttcaaag-agtctcaatgagcaactt 197  Q
    ||||| ||| | |  |||||| ||||||  |||||||||| |||||||||||||||||||| || ||| ||||||||||| ||||||    
T  14658837 tttct-aacaactaatcatgtctaaatatgcactaattgagttgtaagttgataaatatacctcgaagaagtctcaatgaacaactt 14658752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 197
Target Start/End: Complemental strand, 34899578 - 34899532
Alignment:
Q  151 aattgtaagttgataaatatacttcaaagagtctcaatgagcaactt 197  Q
    ||||||||||||||||||| |  ||||||||||| ||||||||||||    
T  34899578 aattgtaagttgataaatacatctcaaagagtcttaatgagcaactt 34899532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 164; Significance: 8e-88; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 13 - 196
Target Start/End: Complemental strand, 42784370 - 42784188
Alignment:
Q  13 caataatattttctcatgaatcagaaactcattctaccacttctctaactagagttaaccatgaaatccctatattatccattctaacctacaaaataat 112  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42784370 caataatattttctcatgaattagaaactcattctaccacttctctaactagagttaaccatgaaatccctatattatccattctaacctacaaaataat 42784271  T
Q  113 ttctaaacgaatcttcatgtgtaaataatcactaattgaattgtaagttgataaatatacttcaaagagtctcaatgagcaact 196  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  42784270 ttct-aacgaatcttcatgtgtaaataaacactaattgaattgtaagttgataaatatacctcaaagagtctcaatgagcaact 42784188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 5520741 - 5520790
Alignment:
Q  12 ccaataatattttctcatgaatcagaaactcattctaccacttctctaac 61  Q
    |||||||||||||||||||||| ||||| ||||||||| |||||||||||    
T  5520741 ccaataatattttctcatgaattagaaaatcattctactacttctctaac 5520790  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 191
Target Start/End: Original strand, 5520832 - 5520896
Alignment:
Q  127 tcatgtgtaaataatcactaattgaattgtaagttgataaatatacttcaaagagtctcaatgag 191  Q
    |||||| ||||||  |||||||||||   ||||||||||||||||| |||||||  |||||||||    
T  5520832 tcatgtctaaatatgcactaattgaaagataagttgataaatatacctcaaagaacctcaatgag 5520896  T

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Target: chr8 (Bit Score: 160; Significance: 2e-85; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 13 - 196
Target Start/End: Original strand, 4707799 - 4707981
Alignment:
Q  13 caataatattttctcatgaatcagaaactcattctaccacttctctaactagagttaaccatgaaatccctatattatccattctaacctacaaaataat 112  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4707799 caataatattttctcatgaattagaaactcattccaccacttctctaactagagttaaccatgaaatccctatattatccattctaacctacaaaataat 4707898  T
Q  113 ttctaaacgaatcttcatgtgtaaataatcactaattgaattgtaagttgataaatatacttcaaagagtctcaatgagcaact 196  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  4707899 ttct-aacgaatcttcatgtgtaaataaacactaattgaattgtaagttgataaatatacctcaaagagtctcaatgagcaact 4707981  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 13 - 191
Target Start/End: Complemental strand, 15998543 - 15998366
Alignment:
Q  13 caataatattttctcatgaatcagaaactcattctaccacttctctaactagagttaaccatgaaatccctatattatccattctaacct-acaaaataa 111  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||| |  |||||| || ||||||| || | ||| | ||||| || |  || |||    
T  15998543 caataatattttctcatgaattagaaactcattctactacttctctaac-aatgttaacgataaaatccccatttcatctactctaatctcaataattaa 15998445  T
Q  112 tttctaaacgaatcttcatgtgtaaataatcactaattgaattgtaagttgataaatata-cttcaaagagtctcaatgag 191  Q
    |||||||   | |  ||||| |||||||  |||||||||| |||||| |||||||||||| ||||||  ||||||||||||    
T  15998444 tttctaa--cagtaatcatgcgtaaatatacactaattgagttgtaaattgataaatataccttcaagaagtctcaatgag 15998366  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 26918594 - 26918659
Alignment:
Q  21 ttttctcatgaatcagaaactcattctaccacttctctaactagagttaaccatgaaatccctatat 87  Q
    ||||||||||||| ||||||||||||||| |||||| ||||||  ||||||||| ||||||| ||||    
T  26918594 ttttctcatgaattagaaactcattctactacttctataacta-tgttaaccataaaatccccatat 26918659  T

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Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 13 - 196
Target Start/End: Original strand, 809992 - 810175
Alignment:
Q  13 caataatattttctcatgaatcagaaactcattctaccacttctctaactagagttaaccatgaaatccctatattatccattctaacctacaaaataat 112  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  809992 caataatattttctcatgaattagaaactcattctaccacttctctaactagagttaaccatgaaatccctatattatccattctaaccaacaaaataat 810091  T
Q  113 ttctaaacgaatcttcatgtgtaaataatcactaattgaattgtaagttgataaatatacttcaaagagtctcaatgagcaact 196  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||  ||||||||||||||||||    
T  810092 ttctaaacgaatcttcatgtgtaaataaacactaattgaattgtaagttgataaatatacctcagggagtctcaatgagcaact 810175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 13 - 196
Target Start/End: Complemental strand, 27561054 - 27560869
Alignment:
Q  13 caataatattttctcatgaatcagaaactcattctaccacttctctaactagagttaaccatgaaatccctatattatccattctaacctacaaaataat 112  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||    
T  27561054 caataatattttctcatgaattagaaactcattctaccacttctctaactagagttaaccataaaatccctacattattcattctaacctacaaaataat 27560955  T
Q  113 ttctaaacgaatcttcatgtgtaaataatcactaatt--gaattgtaagttgataaatatacttcaaagagtctcaatgagcaact 196  Q
    |||||||||||||||||||||||||||| ||||||||  ||||||||||| ||||||||||| |||||||||||||||||||||||    
T  27560954 ttctaaacgaatcttcatgtgtaaataaacactaattgagaattgtaagtcgataaatatacctcaaagagtctcaatgagcaact 27560869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 13 - 196
Target Start/End: Complemental strand, 37457495 - 37457310
Alignment:
Q  13 caataatattttctcatgaatcagaaactcattctaccacttctctaactagagttaaccatgaaatccctatattatccattctaacctacaaaataat 112  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||    
T  37457495 caataatattttctcatgaattagaaactcattctaccacttctctaactagagttaaccataaaatccctacattatacattctaacctacaaaataat 37457396  T
Q  113 ttctaaacgaatcttcatgtgtaaataatcactaatt--gaattgtaagttgataaatatacttcaaagagtctcaatgagcaact 196  Q
    |||||||||||||||||||||||||||| ||||||||  ||||||||||| ||||||||||| |||||||||||||||||||||||    
T  37457395 ttctaaacgaatcttcatgtgtaaataaacactaattgagaattgtaagtcgataaatatacctcaaagagtctcaatgagcaact 37457310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 195
Target Start/End: Complemental strand, 45330514 - 45330446
Alignment:
Q  127 tcatgtgtaaataatcactaattgaattgtaagttgataaatatacttcaaagagtctcaatgagcaac 195  Q
    |||||| ||||||  ||||||||||| || |||||||||||||||| | ||||||||||||||||||||    
T  45330514 tcatgtctaaatatgcactaattgaaatgcaagttgataaatataccttaaagagtctcaatgagcaac 45330446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 195
Target Start/End: Complemental strand, 31712831 - 31712763
Alignment:
Q  127 tcatgtgtaaataatcactaattgaattgtaagttgataaatatacttcaaagagtctcaatgagcaac 195  Q
    |||||| ||||||  || |||||||| | ||||||||||||||||| | ||| ||||||||||||||||    
T  31712831 tcatgtctaaatatgcattaattgaaatataagttgataaatataccttaaaaagtctcaatgagcaac 31712763  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 39156280 - 39156348
Alignment:
Q  127 tcatgtgtaaataatcactaattgaattgtaagttgataaatatacttcaaagagtctcaatgagcaac 195  Q
    |||||| ||||||  || |||||||| | ||||||||||||||||| | ||| ||||||||||||||||    
T  39156280 tcatgtctaaatatgcattaattgaaatataagttgataaatataccttaaaaagtctcaatgagcaac 39156348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 44314757 - 44314709
Alignment:
Q  13 caataatattttctcatgaatcagaaactcattctaccacttctctaac 61  Q
    |||||||||||||| |||||| ||||||||||||||| |||||| ||||    
T  44314757 caataatattttcttatgaattagaaactcattctactacttctttaac 44314709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 44322936 - 44322888
Alignment:
Q  13 caataatattttctcatgaatcagaaactcattctaccacttctctaac 61  Q
    |||||||||||||| |||||| ||||||||||||||| |||||| ||||    
T  44322936 caataatattttcttatgaattagaaactcattctactacttctttaac 44322888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 152; Significance: 1e-80; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 13 - 196
Target Start/End: Original strand, 5735595 - 5735778
Alignment:
Q  13 caataatattttctcatgaatcagaaactcattctaccacttctctaactagagttaaccatgaaatccctatattatccattctaacctacaaaataat 112  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||    
T  5735595 caataatattttctcatgaattagaaactcattctaccacttctctaactagagttaaccacaaaatccctacattatccattctaacctacaaaataat 5735694  T
Q  113 ttctaaacgaatcttcatgtgtaaataatcactaattgaattgtaagttgataaatatacttcaaagagtctcaatgagcaact 196  Q
    |||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||| |||||||||||||||||||||||    
T  5735695 ttctaaacgaatcttcatgtgtaaataaacactaattgaattgtatgtttataaatatacctcaaagagtctcaatgagcaact 5735778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 13 - 196
Target Start/End: Original strand, 5772707 - 5772890
Alignment:
Q  13 caataatattttctcatgaatcagaaactcattctaccacttctctaactagagttaaccatgaaatccctatattatccattctaacctacaaaataat 112  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||    
T  5772707 caataatattttctcatgaattagaaactcattctaccacttctctaactagagttaaccacaaaatccctacattatccattctaacctacaaaataat 5772806  T
Q  113 ttctaaacgaatcttcatgtgtaaataatcactaattgaattgtaagttgataaatatacttcaaagagtctcaatgagcaact 196  Q
    |||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||| |||||||||||||||||||||||    
T  5772807 ttctaaacgaatcttcatgtgtaaataaacactaattgaattgtatgtttataaatatacctcaaagagtctcaatgagcaact 5772890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 7688276 - 7688223
Alignment:
Q  142 cactaattgaattgtaagttgataaatatacttc-aaagagtctcaatgagcaa 194  Q
    ||||||||||| |||||||||||||||||||||| ||| | |||||||||||||    
T  7688276 cactaattgaaatgtaagttgataaatatacttcaaaaaaatctcaatgagcaa 7688223  T

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Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 13 - 196
Target Start/End: Original strand, 5742846 - 5743031
Alignment:
Q  13 caataatattttctcatgaatcagaaactcattctaccacttctctaactagagttaaccatgaaatccctatattatccattctaacctacaaaataat 112  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||    
T  5742846 caataatattttctcatgaattagaaactcattctaccacttctctaactagagttaaccataaaatccctacattattcattctaacctacaaaataat 5742945  T
Q  113 ttctaaacgaatcttcatgtgtaaataatcactaatt--gaattgtaagttgataaatatacttcaaagagtctcaatgagcaact 196  Q
    |||||||||||||||||||||||||||| ||||||||  ||||||||||| ||||||||||| |||||||||||||||||||||||    
T  5742946 ttctaaacgaatcttcatgtgtaaataaacactaattgagaattgtaagtcgataaatatacctcaaagagtctcaatgagcaact 5743031  T

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Target: scaffold0713 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0713
Description:

Target: scaffold0713; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 13 - 197
Target Start/End: Complemental strand, 3978 - 3792
Alignment:
Q  13 caataatattttctcatgaatcagaaactcattctaccacttctctaactagagttaaccatgaaatccctatattatccattctaacct--acaaaata 110  Q
    |||||||||| |||||||||| ||||||||||||||| ||||||||||||| |||||||||  || |||| | |  ||| | ||||| ||  | ||| ||    
T  3978 caataatattctctcatgaattagaaactcattctactacttctctaactatagttaaccacaaattccccaaacaatctactctaatctcaaaaaatta 3879  T
Q  111 atttctaaacgaatcttcatgtgtaaataatcactaattgaattgtaagttgataaatatacttcaaag-agtctcaatgagcaactt 197  Q
    |||||| ||| | |  |||||| ||||||  |||||||||| |||||||||||||||||||| || ||| ||||||||||| ||||||    
T  3878 atttct-aacaactaatcatgtctaaatatgcactaattgagttgtaagttgataaatatacctccaagaagtctcaatgaacaactt 3792  T

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Target: chr6 (Bit Score: 53; Significance: 1e-21; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 13 - 197
Target Start/End: Complemental strand, 27526109 - 27525923
Alignment:
Q  13 caataatattttctcatgaatcagaaactcattctaccacttctctaactagagttaaccatgaaatccctatattatccattctaacct--acaaaata 110  Q
    |||||||||| |||||||||| ||||||||||||||| ||||||||||||| |||||||||  || |||| | |  ||| | ||||| ||  | ||| ||    
T  27526109 caataatattctctcatgaattagaaactcattctactacttctctaactatagttaaccacaaattccccaaacaatctactctaatctcaaaaaatta 27526010  T
Q  111 atttctaaacgaatcttcatgtgtaaataatcactaattgaattgtaagttgataaatatacttcaaag-agtctcaatgagcaactt 197  Q
    |||||| ||| | |  |||||| ||||||  |||||||||| |||||||||||||||||||| || ||| ||||||||||| ||||||    
T  27526009 atttct-aacaactaatcatgtctaaatatgcactaattgagttgtaagttgataaatatacctccaagaagtctcaatgaacaactt 27525923  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 13143638 - 13143706
Alignment:
Q  127 tcatgtgtaaataatcactaattgaattgtaagttgataaatatacttcaaagagtctcaatgagcaac 195  Q
    |||||| ||||||  ||||||||||| ||||||||||||||||||| | ||||||||||||||||||||    
T  13143638 tcatgtctaaatatgcactaattgaaatgtaagttgataaatataccttaaagagtctcaatgagcaac 13143706  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 195
Target Start/End: Complemental strand, 17354364 - 17354296
Alignment:
Q  127 tcatgtgtaaataatcactaattgaattgtaagttgataaatatacttcaaagagtctcaatgagcaac 195  Q
    |||||| ||||||  ||||||||||| | ||||||||||||||||| | ||||||||||||||||||||    
T  17354364 tcatgtctaaatatgcactaattgaaatataagttgataaatataccttaaagagtctcaatgagcaac 17354296  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 22012830 - 22012782
Alignment:
Q  13 caataatattttctcatgaatcagaaactcattctaccacttctctaac 61  Q
    |||||||||||||| |||||| ||||||||||||||| |||||| ||||    
T  22012830 caataatattttcttatgaattagaaactcattctactacttctttaac 22012782  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 195
Target Start/End: Complemental strand, 27682979 - 27682911
Alignment:
Q  127 tcatgtgtaaataatcactaattgaattgtaagttgataaatatacttcaaagagtctcaatgagcaac 195  Q
    |||||| ||||||  || |||||||| | ||||||||||||||||| | ||| ||||||||||||||||    
T  27682979 tcatgtctaaatatgcattaattgaaatataagttgataaatataccttaaaaagtctcaatgagcaac 27682911  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 195
Target Start/End: Complemental strand, 27690300 - 27690232
Alignment:
Q  127 tcatgtgtaaataatcactaattgaattgtaagttgataaatatacttcaaagagtctcaatgagcaac 195  Q
    |||||| ||||||  || |||||||| | ||||||||||||||||| | ||| ||||||||||||||||    
T  27690300 tcatgtctaaatatgcattaattgaaatataagttgataaatataccttaaaaagtctcaatgagcaac 27690232  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 30229985 - 30230053
Alignment:
Q  127 tcatgtgtaaataatcactaattgaattgtaagttgataaatatacttcaaagagtctcaatgagcaac 195  Q
    |||||| ||||||  || |||||||| | ||||||||||||||||| | ||| ||||||||||||||||    
T  30229985 tcatgtctaaatatgcattaattgaaatataagttgataaatataccttaaaaagtctcaatgagcaac 30230053  T

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Target: chr7 (Bit Score: 47; Significance: 5e-18; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 34378259 - 34378185
Alignment:
Q  13 caataatattttctcatgaatcagaaactcattctaccacttctctaactagagttaaccatgaaatccctatat 87  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||||| | ||||||||  |||||| ||||    
T  34378259 caataatattttctcatgaattagaaactcattctactacttctctaactatatttaaccatacaatccccatat 34378185  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 190
Target Start/End: Original strand, 6023852 - 6023900
Alignment:
Q  142 cactaattgaattgtaagttgataaatatacttcaaagagtctcaatga 190  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  6023852 cactaattgaaatgtaagttgataaatatacctcaaagagtctcaatga 6023900  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 28802453 - 28802405
Alignment:
Q  13 caataatattttctcatgaatcagaaactcattctaccacttctctaac 61  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  28802453 caataatattttctcatgaattagaaactcattctactacttctctaac 28802405  T

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Target: scaffold2168 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold2168
Description:

Target: scaffold2168; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 58 - 10
Alignment:
Q  13 caataatattttctcatgaatcagaaactcattctaccacttctctaac 61  Q
    |||||||||||||| |||||| ||||||||||||||| |||||| ||||    
T  58 caataatattttcttatgaattagaaactcattctactacttctttaac 10  T

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