View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5731_low_20 (Length: 205)
Name: NF5731_low_20
Description: NF5731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5731_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 20672340 - 20672149
Alignment:
| Q |
1 |
gaatgattccttgaggagtttccatctaaaaataatataattattaatggttgatactttgtttaggttcacatatgagcaaaaatgatatataataatc |
100 |
Q |
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| T |
20672340 |
gaatgattccttgaggagtttccatctaaaaataatataattattaatggttgatactttgtttaggttcacatatgagcaaaaatgatatataataatc |
20672241 |
T |
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| Q |
101 |
aagaatattatctaatattttttataagacaaattatttgattactacgcaacacaactaaatatatacacagtattacacactcccatatt |
192 |
Q |
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| T |
20672240 |
aaaaatattatctaatattttttataagacaaattatttgattactacgcaacacaactaaatatatacacagtattacacactcccatatt |
20672149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 26 - 192
Target Start/End: Complemental strand, 44928120 - 44927954
Alignment:
| Q |
26 |
ctaaaaataatataattattaatggttgatactttgtttaggttcacatatgagcaaaaatgatatataataatcaagaatattatctaatattttttat |
125 |
Q |
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|||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
44928120 |
ctaaaactaatacaatcattaatggttgatactttgtttaggttcacatatgagcaaaaatgatatataataattaagaatatcatctaatattttttat |
44928021 |
T |
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| Q |
126 |
aagacaaattatttgattactacgcaacacaactaaatatatacacagtattacacactcccatatt |
192 |
Q |
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| T |
44928020 |
aagacaaattatttgattactacgcaaaacaactaaatatacacacaatattacacactcccatatt |
44927954 |
T |
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