View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5731_low_3 (Length: 426)

Name: NF5731_low_3
Description: NF5731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5731_low_3
NF5731_low_3
[»] chr8 (4 HSPs)
chr8 (109-262)||(35387686-35387839)
chr8 (359-420)||(35388018-35388079)
chr8 (167-247)||(38587837-38587917)
chr8 (359-419)||(35384172-35384232)
[»] chr4 (2 HSPs)
chr4 (167-268)||(30333137-30333238)
chr4 (167-262)||(33266565-33266660)
[»] chr1 (1 HSPs)
chr1 (160-262)||(7054626-7054727)
[»] chr7 (2 HSPs)
chr7 (161-259)||(39999023-39999121)
chr7 (163-262)||(32136083-32136182)
[»] chr2 (3 HSPs)
chr2 (161-247)||(41287932-41288018)
chr2 (162-246)||(4473594-4473678)
chr2 (167-262)||(31840273-31840368)
[»] chr5 (1 HSPs)
chr5 (179-262)||(13376794-13376879)
[»] chr3 (2 HSPs)
chr3 (160-215)||(10866906-10866961)
chr3 (222-262)||(30265717-30265757)


Alignment Details
Target: chr8 (Bit Score: 114; Significance: 1e-57; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 109 - 262
Target Start/End: Original strand, 35387686 - 35387839
Alignment:
Q  109 ttgggctgcacaattcggttgtactctatgactgatacctgtggctcatgccttagaacatctacaatgctagaacaaaatttatgttcttcaaacattt 208  Q
    ||||||||||||||||||||||||| | |||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  35387686 ttgggctgcacaattcggttgtactatttgacagatacttgtggctcatgccttacaacatctacaatgctagaacaaaatttatgttcttcaaacattt 35387785  T
Q  209 tgttgggtccattattgccacatggggattcaagaacaatcatgtagttttact 262  Q
    |||||||||||| |||| ||| || |||||||||||||| ||||||||||||||    
T  35387786 tgttgggtccatcattgtcacgtgcggattcaagaacaaccatgtagttttact 35387839  T

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Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 359 - 420
Target Start/End: Original strand, 35388018 - 35388079
Alignment:
Q  359 ggtactttaagttgtgtaattgcagatacacccttcacatttgaacatgcatttcttctcac 420  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  35388018 ggtactttaagttgtgtaattgctgatacacccttcacatttgaacatgcatttcttctcac 35388079  T

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Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 167 - 247
Target Start/End: Complemental strand, 38587917 - 38587837
Alignment:
Q  167 catctacaatgctagaacaaaatttatgttcttcaaacattttgttgggtccattattgccacatggggattcaagaacaa 247  Q
    ||||||||||||||||| || ||||||||||||||| ||||||| ||||||||| |||||||| |||||||||||||||||    
T  38587917 catctacaatgctagaagaagatttatgttcttcaagcattttggtgggtccatcattgccacttggggattcaagaacaa 38587837  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 359 - 419
Target Start/End: Original strand, 35384172 - 35384232
Alignment:
Q  359 ggtactttaagttgtgtaattgcagatacacccttcacatttgaacatgcatttcttctca 419  Q
    ||||| |||| ||||||||||||| |||||||||| |||||| |||||||| |||||||||    
T  35384172 ggtacgttaaattgtgtaattgcatatacaccctttacattttaacatgcacttcttctca 35384232  T

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Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 167 - 268
Target Start/End: Complemental strand, 30333238 - 30333137
Alignment:
Q  167 catctacaatgctagaacaaaatttatgttcttcaaacattttgttgggtccattattgccacatggggattcaagaacaatcatgtagttttacttgaa 266  Q
    |||||| |||||||||| |||  ||||||||||||| ||||||| ||||||||| ||||||||||| |||||||||||||||||| |||||||||| |||    
T  30333238 catctaaaatgctagaaaaaagcttatgttcttcaagcattttggtgggtccatcattgccacatgaggattcaagaacaatcatatagttttactcgaa 30333139  T
Q  267 tg 268  Q
    ||    
T  30333138 tg 30333137  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 167 - 262
Target Start/End: Complemental strand, 33266660 - 33266565
Alignment:
Q  167 catctacaatgctagaacaaaatttatgttcttcaaacattttgttgggtccattattgccacatggggattcaagaacaatcatgtagttttact 262  Q
    ||||||||| |||||||||||||||||||| ||||| ||||||| ||||||||| |||| || ||||| | ||||||||||  |||||||||||||    
T  33266660 catctacaaagctagaacaaaatttatgtttttcaagcattttggtgggtccatcattgtcatatgggaagtcaagaacaaatatgtagttttact 33266565  T

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Target: chr1 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 160 - 262
Target Start/End: Complemental strand, 7054727 - 7054626
Alignment:
Q  160 cttagaacatctacaatgctagaacaaaatttatgttcttcaaacattttgttgggtccattattgccacatggggattcaagaacaatcatgtagtttt 259  Q
    |||||| |||||||||||||||||||| |||| |||||||||| ||||  || |||||||| ||||||||||| |||||||||||||| |||||||||||    
T  7054727 cttagagcatctacaatgctagaacaagatttgtgttcttcaagcattgggt-gggtccatcattgccacatgtggattcaagaacaaccatgtagtttt 7054629  T
Q  260 act 262  Q
    |||    
T  7054628 act 7054626  T

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Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 161 - 259
Target Start/End: Complemental strand, 39999121 - 39999023
Alignment:
Q  161 ttagaacatctacaatgctagaacaaaatttatgttcttcaaacattttgttgggtccattattgccacatggggattcaagaacaatcatgtagtttt 259  Q
    ||||| |||||||||||||||||||| |||| | |||||||| ||||||| ||||| ||| ||| |||||||| ||||||||||||||||| |||||||    
T  39999121 ttagagcatctacaatgctagaacaagatttgtattcttcaagcattttggtgggttcatcattaccacatggagattcaagaacaatcatatagtttt 39999023  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 163 - 262
Target Start/End: Complemental strand, 32136182 - 32136083
Alignment:
Q  163 agaacatctacaatgctagaacaaaatttatgttcttcaaacattttgttgggtccattattgccacatggggattcaagaacaatcatgtagttttact 262  Q
    ||||||||||||||   ||||||||||||||||||||||| ||||||| ||||||||  |||| || ||| |||||||||||||| |||||| |||||||    
T  32136182 agaacatctacaatatcagaacaaaatttatgttcttcaagcattttggtgggtccaccattgtcatatgaggattcaagaacaaccatgtaattttact 32136083  T

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Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 161 - 247
Target Start/End: Original strand, 41287932 - 41288018
Alignment:
Q  161 ttagaacatctacaatgctagaacaaaatttatgttcttcaaacattttgttgggtccattattgccacatggggattcaagaacaa 247  Q
    ||||| |||||||| ||||| ||||| ||||||||||||||| ||||||| ||||||||| ||||||||||| ||||| ||||||||    
T  41287932 ttagagcatctacactgctaaaacaagatttatgttcttcaagcattttggtgggtccatcattgccacatgaggatttaagaacaa 41288018  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 162 - 246
Target Start/End: Complemental strand, 4473678 - 4473594
Alignment:
Q  162 tagaacatctacaatgctagaacaaaatttatgttcttcaaacattttgttgggtccattattgccacatggggattcaagaaca 246  Q
    |||| |||||||||||||| || || |||||||||||| || ||||||| ||||||||| ||||||| |||||||||||||||||    
T  4473678 tagagcatctacaatgctaaaataagatttatgttctttaagcattttgatgggtccatcattgccatatggggattcaagaaca 4473594  T

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Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 167 - 262
Target Start/End: Original strand, 31840273 - 31840368
Alignment:
Q  167 catctacaatgctagaacaaaatttatgttcttcaaacattttgttgggtccattattgccacatggggattcaagaacaatcatgtagttttact 262  Q
    |||||||||||||||||||| |||||||| |||||||||||||  ||| ||||| ||||   ||||  ||||||||||||| ||||||||||||||    
T  31840273 catctacaatgctagaacaagatttatgtccttcaaacattttagtggatccatcattgatccatgaagattcaagaacaaccatgtagttttact 31840368  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 179 - 262
Target Start/End: Original strand, 13376794 - 13376879
Alignment:
Q  179 tagaacaaaatttatgttcttcaaacattttgttgggtccattattgccacatggg--gattcaagaacaatcatgtagttttact 262  Q
    |||||||||||||||||| |||||| |||||| ||||||||| |||| | ||||||   |||||||||||| ||||||||||||||    
T  13376794 tagaacaaaatttatgtttttcaaatattttggtgggtccatcattgtctcatgggatcattcaagaacaaccatgtagttttact 13376879  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 160 - 215
Target Start/End: Complemental strand, 10866961 - 10866906
Alignment:
Q  160 cttagaacatctacaatgctagaacaaaatttatgttcttcaaacattttgttggg 215  Q
    |||||| |||||||||||||||||||| |||||||||||| || ||||||| ||||    
T  10866961 cttagagcatctacaatgctagaacaatatttatgttcttgaagcattttggtggg 10866906  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 262
Target Start/End: Complemental strand, 30265757 - 30265717
Alignment:
Q  222 attgccacatggggattcaagaacaatcatgtagttttact 262  Q
    |||||||||||| ||||||||||||| ||||||||||||||    
T  30265757 attgccacatggcgattcaagaacaaccatgtagttttact 30265717  T

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