View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5731_low_6 (Length: 359)
Name: NF5731_low_6
Description: NF5731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5731_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 9 - 349
Target Start/End: Complemental strand, 47080931 - 47080591
Alignment:
| Q |
9 |
acatcatcagtgatgctgtctgcaagtgttatcctggtttcatcctttccgagaccaaaagtaatcctaaattgcctatggactgcgtacagaaacatag |
108 |
Q |
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| T |
47080931 |
acatcagcagtgatgctgtctgcaagtgttatcctggtttcatcctttccgagaccaaaagtaatcctaaattgcctatggactgcgtacagaaacatag |
47080832 |
T |
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| Q |
109 |
caaagatgactgtgaaagcagcgaaggcacggcgttatataattatactaactttaaaaatatgtcttggggtgatattccatattctgttatacctgtg |
208 |
Q |
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| T |
47080831 |
caaagatgactgtgaaagcagcgaaggcacggcgttatataattatactaactttaagaatatgtcttggggtgatattccatattctgttatacctgtg |
47080732 |
T |
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| Q |
209 |
atgaacatgaaaacttgtgagcaggcttgccaagaagattgtgtttgcgggggagcaatatatacaaacactagctgcaataaatataggcttccactta |
308 |
Q |
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| T |
47080731 |
atgaacatgaaaacttgtgagcaggcttgccaagaagattgtgtttgcgggggagcaatatatacaaacactagctgcaataaatataggcttccactta |
47080632 |
T |
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| Q |
309 |
tttatggcagggttcaaaatgattcttccaccgtgtctgtg |
349 |
Q |
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| T |
47080631 |
tttatggcagggttcaaaatgattcttccaccgtgtctgtg |
47080591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 81 - 336
Target Start/End: Original strand, 47060889 - 47061150
Alignment:
| Q |
81 |
tgcctatggactgcgtacagaaacatagcaaagatgactgtgaaagcagcgaaggc---acggcgttatataattatactaactttaaaaatatgtcttg |
177 |
Q |
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| T |
47060889 |
tgcctatagactgcgtacagacgcatagcaaagatgactgtgaaagcattgaagaccgaacgttgttgtataattttactcactttgagaatatgcattg |
47060988 |
T |
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| Q |
178 |
gggtgatattccatattctgttatacctgtgatga---acatgaaaacttgtgagcaggcttgccaagaagattgtgtttgcgggggagcaatatataca |
274 |
Q |
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| T |
47060989 |
gggggatgttccatattctgttatacccgtgttgattgatatggatacttgtgagaaggcttgccgacaagattgtgtttgtgggggagcaatatatacc |
47061088 |
T |
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| Q |
275 |
aacactagctgcaataaatataggcttccacttatttatggcagggttcaaaatgattcttc |
336 |
Q |
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| T |
47061089 |
aacggcagctgcaataaatataggcttccacttatacacggcaagtttcaaaatgattcttc |
47061150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 47060835 - 47060875
Alignment:
| Q |
18 |
gtgatgctgtctgcaagtgttatcctggtttcatcctttcc |
58 |
Q |
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| T |
47060835 |
gtgatgctgtatgcaaatgttatcctggtttcatcccttcc |
47060875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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