View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5731_low_7 (Length: 341)
Name: NF5731_low_7
Description: NF5731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5731_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 21706464 - 21706142
Alignment:
| Q |
1 |
tggtagacttctagattcctccatggagaatagagatttcagattttcacaacggataacttttaaatgcttgagacattggagactctgagtctttctt |
100 |
Q |
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| T |
21706464 |
tggtagacttctagattcctccatggagaatagagatttcagattttcacaacgtaaaacttgtaaatgcttgagacattggagactctgagtctgtctt |
21706365 |
T |
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| Q |
101 |
ggagttgtaggacccaaccatgatatggagttcaactgaggcaaatcatataaatccaagtacagttttaggggcaagttctgaaaatgaaaaaggttga |
200 |
Q |
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| T |
21706364 |
ggagttgtaggacccaaccatgatatggagttcaactgaggcaaatcatataattccaagtccagttttaggggcaagttctgaaaatgaaaaaggttga |
21706265 |
T |
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| Q |
201 |
tgaaattataaagcatatttgggaaattaaataaattatgcttctgcaaaatagaacatacttcattttgactatgatcagagcgtatcatcacaaagat |
300 |
Q |
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| T |
21706264 |
tgaaattataaagcatatttgggaaattaaataaattatgcttctgcaaaatagaacatacttcattttgactatgatcagagcgtatcatcacaaagat |
21706165 |
T |
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| Q |
301 |
ccatgacaaagccaatttgggac |
323 |
Q |
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| T |
21706164 |
ccatgacaaagccaatttgggac |
21706142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 21713000 - 21713191
Alignment:
| Q |
1 |
tggtagacttctagattcctccatggagaatagagatttcagattttcacaacggataacttttaaatgcttgagacattggagactctgagtctttctt |
100 |
Q |
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| T |
21713000 |
tggtagacttctagattccttcatggagaacaaagatttcaaattttcacaatcacctacttttaaatactggagacattggagactccatatctgtctt |
21713099 |
T |
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| Q |
101 |
ggagttgtaggacccaaccatgatatggagttcaactgaggcaaatcatataaatccaagtacagttttaggggcaagttctgaaaatgaaa |
192 |
Q |
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| T |
21713100 |
ggagctgtaggatcctgccatgatatggatttcaactgaggcaaaacatgtaaatacaactccagttttaagggcaagttctgaacatgaaa |
21713191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 3 - 141
Target Start/End: Complemental strand, 21709374 - 21709236
Alignment:
| Q |
3 |
gtagacttctagattcctccatggagaatagagatttcagattttcacaacggataacttttaaatgcttgagacattggagactctgagtctttcttgg |
102 |
Q |
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|||||||||||||||||| || |||||||||||||||||||||||||||| ||| ||| || ||| |||||||||||||||| || | | |||||| |
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| T |
21709374 |
gtagacttctagattccttcacggagaatagagatttcagattttcacaatcaccaacatttcaacgctggagacattggagactccgaatttgtcttgg |
21709275 |
T |
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| Q |
103 |
agttgtaggacccaaccatgatatggagttcaactgagg |
141 |
Q |
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| T |
21709274 |
agttataagacccaaccatgatatggcgttcaattgagg |
21709236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 268 - 315
Target Start/End: Complemental strand, 21709144 - 21709097
Alignment:
| Q |
268 |
ttgactatgatcagagcgtatcatcacaaagatccatgacaaagccaa |
315 |
Q |
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| T |
21709144 |
ttgactatgatcagagcgtatcatcacagcgatccataacatagccaa |
21709097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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