View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5732-Insertion-3 (Length: 285)
Name: NF5732-Insertion-3
Description: NF5732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5732-Insertion-3 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 6 - 285
Target Start/End: Complemental strand, 1960040 - 1959761
Alignment:
| Q |
6 |
caacatgcaatcaatccctcgtgatcatttgaagtgtttgtgcttgagcacagagtggtagcaaatcatgtcggtccaagagtatcagttgcaagctttt |
105 |
Q |
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| T |
1960040 |
caacatgcaatcaatccctcgtgatcatttgaagtgtttgtgcttgagcacagagtggtagcaaatcatgtcggtccaagagtatcagttgcaagctttt |
1959941 |
T |
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| Q |
106 |
atagcacaagttttcagccatcaacaaagctttatggtcctataaaggaattagtatcagaagataatcctccaaagtatagggaaacaacagtgcatga |
205 |
Q |
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| T |
1959940 |
atagcacaagttttcagccatcaacaaaactttatggtcctataaaggaattagtatcagaagataatcctccaaagtatagggaaacaacagtgcatga |
1959841 |
T |
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| Q |
206 |
ttatgtttctttctccatggcaagaggccttgatggaacttctcttttgccatatttcaagattggaaatttctgataca |
285 |
Q |
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| T |
1959840 |
ttatgtttctttctccatggcaagaggccttgatggaacttctcttttgccatatttcaagattggaaatttctgataca |
1959761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 49 - 285
Target Start/End: Original strand, 2023328 - 2023564
Alignment:
| Q |
49 |
ttgagcacagagtggtagcaaatcatgtcggtccaagagtatcagttgcaagcttttatagcacaagttttcagccatcaacaaagctttatggtcctat |
148 |
Q |
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| T |
2023328 |
ttgagcacagagtggtagcaaatcatgtcggtccaagagtatcagttgcaagcttttatagcacaagttttcagccatcaacaaaactttatggtcctat |
2023427 |
T |
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| Q |
149 |
aaaggaattagtatcagaagataatcctccaaagtatagggaaacaacagtgcatgattatgtttctttctccatggcaagaggccttgatggaacttct |
248 |
Q |
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| T |
2023428 |
aaaggaattagtatcagaagataatcctccaaagtatagggaaacaacagtgcatgattatgtttctttctccatggcaagaggccttgatggaacttct |
2023527 |
T |
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| Q |
249 |
cttttgccatatttcaagattggaaatttctgataca |
285 |
Q |
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| T |
2023528 |
cctttgccatatttcaagattggaaatttctgataca |
2023564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 196
Target Start/End: Original strand, 2034773 - 2034839
Alignment:
| Q |
130 |
caaagctttatggtcctataaaggaattagtatcagaagataatcctccaaagtatagggaaacaac |
196 |
Q |
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| T |
2034773 |
caaagctctatggacctataaaggaactattatcagaagacaatcctcctaaatacagagaaacaac |
2034839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 10769502 - 10769550
Alignment:
| Q |
130 |
caaagctttatggtcctataaaggaattagtatcagaagataatcctcc |
178 |
Q |
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| T |
10769502 |
caaagctctatggacctataaaggaactattatcagaagacaatcctcc |
10769550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 66 - 169
Target Start/End: Original strand, 16439495 - 16439598
Alignment:
| Q |
66 |
gcaaatcatgtcggtccaagagtatcagttgcaagcttttatagcacaagttttcagccatcaacaaagctttatggtcctataaaggaattagtatcag |
165 |
Q |
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| T |
16439495 |
gcaaatcttgtaggtccaagagtctctattgggagcttttttagcactagtcttcatccatctacaaggatttatggtcccataaaggaactattatctg |
16439594 |
T |
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| Q |
166 |
aaga |
169 |
Q |
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|||| |
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| T |
16439595 |
aaga |
16439598 |
T |
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