View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5732_high_1 (Length: 329)
Name: NF5732_high_1
Description: NF5732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5732_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-169; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 1092690 - 1092997
Alignment:
| Q |
1 |
atcacatttatttctttactatttgtgtaattttaatacattggtcttctttgcccagtctattttaatgttctctcctgtccaattctataggtagtaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1092690 |
atcacatttatttctttactatttgtgtaattttaatacattggtcttctttgcccagtctattttaatgttctctcctgtccaattctataggtagtaa |
1092789 |
T |
|
| Q |
101 |
ttccatgctttgttagagtcataatacacttctattctggtgttgtttctccctctcaacatggtggtgaaaaacacaaaccaattagaggaaaccacta |
200 |
Q |
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|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1092790 |
ttccatgctttgttagagtcataatacacttccattctggtgttgtttctccctctcaacatggtggtgaaaaacacaaaccaattagaggaaaccacta |
1092889 |
T |
|
| Q |
201 |
attccacttatgatagagaagctgaagtgaaagcttttgatgattcaaaagtaggtgtcaaaggtttggtggagtctggggtgtcgaagattccacgcat |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
1092890 |
attccacttatgatagagaagctgaagtgaaagcttttgatgattcaaaagtaggtgtcaaaggtttggtggagtctggggtgtcgaaaattccacgcat |
1092989 |
T |
|
| Q |
301 |
gttccata |
308 |
Q |
| |
|
|||||||| |
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|
| T |
1092990 |
gttccata |
1092997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 303
Target Start/End: Complemental strand, 25225169 - 25225067
Alignment:
| Q |
201 |
attccacttatgatagagaagctgaagtgaaagcttttgatgattcaaaagtaggtgtcaaaggtttggtggagtctggggtgtcgaagattccacgcat |
300 |
Q |
| |
|
||||||| ||||||||| | | |||||||||||||||||||||||| ||| | ||||| | |||| | ||||| ||||||| | ||||| || ||||| |
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| T |
25225169 |
attccacatatgatagaaatgttgaagtgaaagcttttgatgattcgaaacttggtgttagaggtcttatggagcgtggggtgacaaagatcccgcgcat |
25225070 |
T |
|
| Q |
301 |
gtt |
303 |
Q |
| |
|
||| |
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|
| T |
25225069 |
gtt |
25225067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 303
Target Start/End: Original strand, 26168213 - 26168315
Alignment:
| Q |
201 |
attccacttatgatagagaagctgaagtgaaagcttttgatgattcaaaagtaggtgtcaaaggtttggtggagtctggggtgtcgaagattccacgcat |
300 |
Q |
| |
|
||||||| ||||||||| | | |||| |||||| |||||||||||||||| | ||||| | |||| | ||||| ||||||| | ||||| |||||||| |
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| T |
26168213 |
attccacatatgatagaaatgatgaattgaaagtttttgatgattcaaaacttggtgtaagaggtcttatggagcgtggggtgacaaagatcccacgcat |
26168312 |
T |
|
| Q |
301 |
gtt |
303 |
Q |
| |
|
||| |
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|
| T |
26168313 |
gtt |
26168315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 303
Target Start/End: Original strand, 26395846 - 26395926
Alignment:
| Q |
223 |
tgaagtgaaagcttttgatgattcaaaagtaggtgtcaaaggtttggtggagtctggggtgtcgaagattccacgcatgtt |
303 |
Q |
| |
|
|||||||||||||||||| || |||||||| ||||| | |||| | |||||| |||||| | ||||| ||||||||||| |
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|
| T |
26395846 |
tgaagtgaaagcttttgaagaatcaaaagttggtgtaagaggtcttgtggagagtggggtaacaaagatcccacgcatgtt |
26395926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 98; Significance: 3e-48; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 128 - 304
Target Start/End: Original strand, 29462555 - 29462729
Alignment:
| Q |
128 |
acttctattctggtgttgtttctccctctcaacatggtggtgaaaaacacaaaccaattagaggaaaccactaattccacttatgatagagaagctgaag |
227 |
Q |
| |
|
|||| |||||||||||||||| ||| |||| |||||||| ||||| ||||||||||| ||||| ||| | ||| |||||||||||||||||| |||| |
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| T |
29462555 |
acttttattctggtgttgtttg--cctatcaatatggtggtagaaaactcaaaccaattaaaggaatccagtgatttcacttatgatagagaagccgaag |
29462652 |
T |
|
| Q |
228 |
tgaaagcttttgatgattcaaaagtaggtgtcaaaggtttggtggagtctggggtgtcgaagattccacgcatgttc |
304 |
Q |
| |
|
| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||| |
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| T |
29462653 |
ttaaagcttttgatgattcaaaagttggtgtcaaaggtttggtggattctggggtgtcaaagattccacgcatgttc |
29462729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 153 - 308
Target Start/End: Original strand, 19844333 - 19844488
Alignment:
| Q |
153 |
ctctcaacatggtggtgaaaaacacaaaccaattagaggaaaccactaattccacttatgatagagaagctgaagtgaaagcttttgatgattcaaaagt |
252 |
Q |
| |
|
||||||| |||||||| |||||| |||||||| |||| || ||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
19844333 |
ctctcaatatggtggtaaaaaactcaaaccaagtagaaaaatccactaattccacttatgatagatacaatgaagtgaaagcttttgatgattcaaaagc |
19844432 |
T |
|
| Q |
253 |
aggtgtcaaaggtttggtggagtctggggtgtcgaagattccacgcatgttccata |
308 |
Q |
| |
|
||||| | ||||||||||||||| || ||||||||||| |||| |||||||||| |
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|
| T |
19844433 |
tggtgtgagaggtttggtggagtccggagtgtcgaagatcccacagatgttccata |
19844488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 132 - 300
Target Start/End: Original strand, 19890171 - 19890337
Alignment:
| Q |
132 |
ctattctggtgttgtttctccctctcaacatggtggtgaaaaacacaaaccaattagaggaaaccactaattccacttatgatagagaagctgaagtgaa |
231 |
Q |
| |
|
||||| ||||||||||| |||||||| |||||||| ||||||||||| || ||||||||| | ||||||||||||||||||||| || | |||||||| |
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| T |
19890171 |
ctattttggtgttgtttt--cctctcaatatggtggtaaaaaacacaaatcagttagaggaatctactaattccacttatgatagaaaaacagaagtgaa |
19890268 |
T |
|
| Q |
232 |
agcttttgatgattcaaaagtaggtgtcaaaggtttggtggagtctggggtgtcgaagattccacgcat |
300 |
Q |
| |
|
| ||||||||||||||||| ||||||| ||||||||||||| ||||||||| ||||| || ||||| |
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|
| T |
19890269 |
aaattttgatgattcaaaagctggtgtcagaggtttggtggagcatggggtgtcaaagatcccgcgcat |
19890337 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 132 - 307
Target Start/End: Complemental strand, 49465622 - 49465449
Alignment:
| Q |
132 |
ctattctggtgttgtttctccctctcaacatggtggtgaaaaacacaaaccaattagaggaaaccactaattccacttatgatagagaagctgaagtgaa |
231 |
Q |
| |
|
|||||||||| ||||||| | ||||||||||||||| ||||||||||| |||||||||||| ||||| ||||||||||||||||| ||||||||||||| |
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|
| T |
49465622 |
ctattctggttttgtttc--cttctcaacatggtggtaaaaaacacaaatcaattagaggaagccactgattccacttatgatagaaaagctgaagtgaa |
49465525 |
T |
|
| Q |
232 |
agcttttgatgattcaaaagtaggtgtcaaaggtttggtggagtctggggtgtcgaagattccacgcatgttccat |
307 |
Q |
| |
|
|||||||||||||||| || ||| ||||| |||||||| ||||||||||| || ||||| |||||| | |||||| |
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|
| T |
49465524 |
agcttttgatgattcacgagcaggcgtcaatggtttggttgagtctggggtttcaaagatcccacgctttttccat |
49465449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 201 - 303
Target Start/End: Original strand, 8348970 - 8349072
Alignment:
| Q |
201 |
attccacttatgatagagaagctgaagtgaaagcttttgatgattcaaaagtaggtgtcaaaggtttggtggagtctggggtgtcgaagattccacgcat |
300 |
Q |
| |
|
||||||| ||||||||| | |||||||||||||||||||||||||||||| | ||||| | |||| | ||||| |||||| | ||||| |||||||| |
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|
| T |
8348970 |
attccacatatgatagaaatgctgaagtgaaagcttttgatgattcaaaacttggtgttagaggtcttatggagcgtggggtaacaaagatcccacgcat |
8349069 |
T |
|
| Q |
301 |
gtt |
303 |
Q |
| |
|
||| |
|
|
| T |
8349070 |
gtt |
8349072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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