View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5732_high_2 (Length: 314)
Name: NF5732_high_2
Description: NF5732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5732_high_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 12 - 299
Target Start/End: Complemental strand, 40285055 - 40284748
Alignment:
| Q |
12 |
atcatcagcaaatttatttttggccattttttgtgcttatgcctatattctttaggaaggagtttgaatattttttaaattgtaacttggttaacttgct |
111 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40285055 |
atcatcagcaaatttatttttggacattttttgtgcttatgcctatattctttaggaaggagattgaatattttttaaattgtaacttggttaacttgct |
40284956 |
T |
|
| Q |
112 |
atttgttgcaagcatggtgacagaaaatgttttatattta--------------------agataagcatgtcatctgcgtttttaggtcaagatcatag |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40284955 |
atttgttgcaagcatggtgacagaaaatgttttatatttattggactctaagataagataagataagcatgtcatctgcgtttttaggtcaagatcatag |
40284856 |
T |
|
| Q |
192 |
gtaatgttcgtctattgctccatccttgtacctaatatggtttttagaaagtttgatcacaccaaagagaatacaaagccaggtaaagggtgaggtaact |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40284855 |
gtaatgttcgtctattgctccatccttgtaccttacatggtttttagaaagtttgatcacaccaaagagaatacaaagccaggtaaagggtgaggtaact |
40284756 |
T |
|
| Q |
292 |
gatataag |
299 |
Q |
| |
|
|||||||| |
|
|
| T |
40284755 |
gatataag |
40284748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University