View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5732_low_1 (Length: 573)

Name: NF5732_low_1
Description: NF5732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5732_low_1
NF5732_low_1
[»] chr8 (4 HSPs)
chr8 (206-548)||(39370424-39370766)
chr8 (7-181)||(39370264-39370437)
chr8 (450-523)||(34263626-34263699)
chr8 (167-216)||(32496719-32496767)
[»] chr4 (1 HSPs)
chr4 (457-523)||(24528698-24528764)
[»] chr2 (1 HSPs)
chr2 (159-219)||(37883016-37883075)
[»] chr6 (1 HSPs)
chr6 (460-523)||(2354024-2354087)
[»] chr3 (1 HSPs)
chr3 (206-301)||(3511669-3511762)
[»] chr7 (1 HSPs)
chr7 (170-218)||(27048996-27049043)
[»] chr1 (1 HSPs)
chr1 (168-244)||(9687435-9687510)


Alignment Details
Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 206 - 548
Target Start/End: Original strand, 39370424 - 39370766
Alignment:
Q  206 aaaattgcaaaccccctcaagatacacaattatccaagctcccaatgcaccaaaatagactagagttgttgtggtgaaggaaactcagtatgactccata 305  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  39370424 aaaattgcaaaccccatcaagatacacaattatccaagctcccaatgcaccaaaatagactagagttgttgtggtgaagaaaactcagtatgactccata 39370523  T
Q  306 tttatattaactctctacttttgtttcttccaactattctcatgaatcataacaaatcacatctacagaatggactctcttcaacttttctgtcttctcc 405  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  39370524 tttatattaactctctacttttgtttcttccaactattctcatgaatcataacaaatcacatctacagaatgaactctcttcaacttttctgtcttctcc 39370623  T
Q  406 tatagacttcgcaaactctccacagtaatggcactaaacattactcatatattttggttgaaatcttctaccatgttgatcaccataattctttccttgc 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39370624 tatagacttcgcaaactctccacagtaatggcactaaacattactcatatattttggttgaaatcttctaccatgttgatcaccataattctttccttgc 39370723  T
Q  506 ccacctttagttactagtgcattataaaccatatccatcatct 548  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  39370724 ccacctttagttactagtgcattataaaccatatccatcatct 39370766  T

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Target: chr8; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 7 - 181
Target Start/End: Original strand, 39370264 - 39370437
Alignment:
Q  7 tggacatcatcataccccactcccccacctgaactatcaagccaacttttttctcctttctttggtgaagaattgtttgtaaagcaaccagagaaaatct 106  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  39370264 tggacctcattataccccactcccccacctgaactatcaagccaacttttttctcctttctttggtgaagaattgtttgtaaagcaacctgagaaaatct 39370363  T
Q  107 ccacacaagggnnnnnnnnnctcaataaaaatttattactcaacctgaatgatataagaacaaaattgcaaaccc 181  Q
     ||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39370364 tcacacaaggg-aaaaaaaactcaataaaaatttattactcaacctgaatgatataagaacaaaattgcaaaccc 39370437  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 450 - 523
Target Start/End: Original strand, 34263626 - 34263699
Alignment:
Q  450 tcatatattttggttgaaatcttctaccatgttgatcaccataattctttccttgcccacctttagttactagt 523  Q
    |||||| | ||||||||||||||||| |||||||||||||||||||||||| ||| || | |||||||||||||    
T  34263626 tcatatctcttggttgaaatcttctatcatgttgatcaccataattctttcattgtccgcatttagttactagt 34263699  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 216
Target Start/End: Original strand, 32496719 - 32496767
Alignment:
Q  167 caaaattgcaaaccctctcaattacaatttgtgcacagaaaaattgcaaa 216  Q
    |||||||||||||| ||||||||| ||||| |||||||| ||||||||||    
T  32496719 caaaattgcaaacc-tctcaattataatttttgcacagagaaattgcaaa 32496767  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 457 - 523
Target Start/End: Complemental strand, 24528764 - 24528698
Alignment:
Q  457 ttttggttgaaatcttctaccatgttgatcaccataattctttccttgcccacctttagttactagt 523  Q
    |||| |||||||||| ||||||| |||||||||| |||||||||||| || ||| ||||||||||||    
T  24528764 tttttgttgaaatctcctaccatattgatcaccacaattctttcctttccaaccattagttactagt 24528698  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 37883016 - 37883075
Alignment:
Q  159 tataagaacaaaattgcaaaccctctcaattacaatttgtgcacagaaaaattgcaaaccc 219  Q
    |||||| ||||||||||||||| |||| |||||||||| ||||  ||||||||||||||||    
T  37883016 tataaggacaaaattgcaaacc-tctcgattacaatttttgcatggaaaaattgcaaaccc 37883075  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 460 - 523
Target Start/End: Complemental strand, 2354087 - 2354024
Alignment:
Q  460 tggttgaaatcttctaccatgttgatcaccataattctttccttgcccacctttagttactagt 523  Q
    ||||||||||||| | |||| |||||||||||| || ||||||| || ||| ||||||||||||    
T  2354087 tggttgaaatcttatgccatattgatcaccatatttatttccttaccaaccgttagttactagt 2354024  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 301
Target Start/End: Original strand, 3511669 - 3511762
Alignment:
Q  206 aaaattgcaaaccccctcaagatacacaattatccaagctcccaatgcaccaaaatagactagagttgttgtggtgaaggaaactcagtatgactc 301  Q
    |||||||||||| | ||||||| |||||| || |||| | |||||| |||| ||| ||||||||||||||||||||| | ||||||| ||| ||||    
T  3511669 aaaattgcaaactctctcaagacacacaactacccaatc-cccaatacacccaaa-agactagagttgttgtggtgatgaaaactcaatataactc 3511762  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 170 - 218
Target Start/End: Original strand, 27048996 - 27049043
Alignment:
Q  170 aattgcaaaccctctcaattacaatttgtgcacagaaaaattgcaaacc 218  Q
    ||||||||||| |||||||| |||||| ||||| |||||||||||||||    
T  27048996 aattgcaaacc-tctcaattgcaatttttgcacggaaaaattgcaaacc 27049043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 168 - 244
Target Start/End: Original strand, 9687435 - 9687510
Alignment:
Q  168 aaaattgcaaaccctctcaattacaatttgtgcacagaaaaattgcaaaccccctcaagatacacaattatccaagc 244  Q
    |||||||||||||||||||||||  || | ||||  | |||||||||||||| ||||||| |||||| ||| |||||    
T  9687435 aaaattgcaaaccctctcaattaatatctttgca-tggaaaattgcaaaccctctcaagacacacaactattcaagc 9687510  T

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