View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5733-Insertion-3 (Length: 544)
Name: NF5733-Insertion-3
Description: NF5733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5733-Insertion-3 |
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Alignment Details
Target: chr1 (Bit Score: 407; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 8 - 467
Target Start/End: Complemental strand, 46813766 - 46813308
Alignment:
| Q |
8 |
ggaaatgggaagacattggcatgaaagggaaaagaaagaccccacaacagtgctacgattattgctatagagcaagtatatttccccacgtcattaaaga |
107 |
Q |
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| T |
46813766 |
ggaaatgggaagacattggcatgaaagggaaaagaaagaccccacaacagtgctacgattattgctatagagcaagtgtatttccccacgtcattaaaga |
46813667 |
T |
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| Q |
108 |
tcctttatgtaaaaaaggatgtcaatatattccaatgtgggaaagtaacttaagtaagtactatcannnnnnncatgtctatattacgttatataattga |
207 |
Q |
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| T |
46813666 |
tcctttatgtaaaaaaggatgtcaatatattccaatgtgggaaagtaacttaagtaagtactatcatttttttcatgtctatattacgttatataattga |
46813567 |
T |
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| Q |
208 |
atgtgtgtttcattttttaacaattgtccatagttatttaactaataaaatgcttgcttctattgaatatatttttgggttgggaggatcgattgactca |
307 |
Q |
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| T |
46813566 |
atgtgtgtttcattttcttaca-ttgtccatagttatttaactaataaaatgtttgcttctattgaatatatttttgggttgggaggatcgattgactca |
46813468 |
T |
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| Q |
308 |
aatgatttgctaattaataacgagttcattctaagtacttactggataacatatcatccatggtttgtaccatttacaaaacaaagttgtaacatggaaa |
407 |
Q |
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| T |
46813467 |
aatgatttgctaattaataacgagttctttctaagtacttactggataacatatcatccatggtttgtaccatttacaaaaaaaagttgtaacatggaaa |
46813368 |
T |
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| Q |
408 |
ttttaccaaaccatgagactcatacacatccgcaactatagttccaaataaagcactcaa |
467 |
Q |
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| T |
46813367 |
ttttaccaaaccatgagactcatacacatccgcaactatagttccaaataaagcactcaa |
46813308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 470 - 544
Target Start/End: Complemental strand, 46813264 - 46813190
Alignment:
| Q |
470 |
catgaggtgttgtttttcaagaagttctcccgaaatcgttggtaaccaatgaaaatctgctcatggccacaattc |
544 |
Q |
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| T |
46813264 |
catgaggtgttgtttttcaagaagttctcgcgaaatcgttggtaaccaatgaaaatatgctcatggccacaattc |
46813190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 353 - 404
Target Start/End: Original strand, 31851671 - 31851722
Alignment:
| Q |
353 |
ataacatatcatccatggtttgtaccatttacaaaacaaagttgtaacatgg |
404 |
Q |
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| T |
31851671 |
ataacataacatccatggtttataccatttacaaaacaaagtagcaacatgg |
31851722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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