View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5733-Insertion-4 (Length: 510)

Name: NF5733-Insertion-4
Description: NF5733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5733-Insertion-4
NF5733-Insertion-4
[»] chr7 (17 HSPs)
chr7 (8-468)||(17269094-17269553)
chr7 (9-222)||(17261387-17261600)
chr7 (12-175)||(8647699-8647862)
chr7 (294-378)||(17261633-17261717)
chr7 (10-175)||(10492942-10493107)
chr7 (10-190)||(6790406-6790586)
chr7 (11-211)||(7876739-7876939)
chr7 (60-175)||(13332091-13332206)
chr7 (60-177)||(8655395-8655512)
chr7 (14-205)||(3148371-3148562)
chr7 (32-112)||(8602752-8602832)
chr7 (59-182)||(8577334-8577457)
chr7 (12-178)||(8572588-8572754)
chr7 (12-190)||(8660242-8660420)
chr7 (60-175)||(8668511-8668626)
chr7 (54-187)||(8582703-8582836)
chr7 (32-112)||(8591416-8591496)
[»] chr5 (2 HSPs)
chr5 (60-189)||(28220993-28221122)
chr5 (17-175)||(42554128-42554286)
[»] chr8 (1 HSPs)
chr8 (17-175)||(43745827-43745982)
[»] chr1 (3 HSPs)
chr1 (11-175)||(15596056-15596220)
chr1 (12-175)||(34465189-34465352)
chr1 (10-175)||(4677481-4677646)
[»] chr2 (8 HSPs)
chr2 (12-175)||(12257855-12258018)
chr2 (60-190)||(14705509-14705639)
chr2 (12-192)||(12244327-12244507)
chr2 (14-175)||(43626320-43626481)
chr2 (11-211)||(16656505-16656705)
chr2 (12-118)||(16661064-16661170)
chr2 (12-175)||(7543275-7543438)
chr2 (12-172)||(12235796-12235956)
[»] chr4 (4 HSPs)
chr4 (12-183)||(35133452-35133623)
chr4 (60-205)||(9322975-9323120)
chr4 (60-205)||(9334947-9335092)
chr4 (60-205)||(9377454-9377599)


Alignment Details
Target: chr7 (Bit Score: 384; Significance: 0; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 8 - 468
Target Start/End: Original strand, 17269094 - 17269553
Alignment:
Q  8 catggcagcttgattcttagcggaatcaccgataaacctttcatctttagcaaaagcaacaaatgaaggagtagttttgttgccttgatcattgtgtata 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||    
T  17269094 catggcagcttgattcttagcggaatcaccgataaacctttcatctttagcaaaagcaacaaaagacggagtagttttgttgccttgatcattgtgtata 17269193  T
Q  108 atctcaactctaccatgttcttcatgccacacagcaacacatgagtacgtcgtcccaaggtctattccgatggcacatccttcttgattttttgccataa 207  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17269194 atctcaactctaccgtgttcttcatgccacacagcaacacatgagtatgtcgtcccaaggtctattccgatggcacatccttcttgattttttgccataa 17269293  T
Q  208 tcttacaatgaaaacaaagaagctcnnnnnnnnnnnnnnntacgatcaagtcaaaactagagtaaagtaaaaaacagaacaaaattaactttaccttagt 307  Q
    |||||||||||||||||||||||||               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17269294 tcttacaatgaaaacaaagaagctcaaaaacaaaaaaaaatacgatcaagtcaaaactagagtaaagtaaaaaacagaacaaaattaactttaccttagt 17269393  T
Q  308 tataaacggaagcgtgagttagaagaaaaggtctacttagggtttcttccaaagcaaaatcgttcttttatattcacgataaagcaaaaccgttcttcca 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  17269394 tataaacggaagcgtgagttagaagaaaaggtctacttagggtttcttccaaagcaaaatcgttcttttatattcacgatatagcaaaaccgttcttcca 17269493  T
Q  408 aattttatctctaggattaacttatacccctccgttcctttttaaatgtctgtcggttttg 468  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  17269494 aattttatctctaggattaacttatacccctcccttcctttttaaatgtc-gtcggttttg 17269553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 9 - 222
Target Start/End: Original strand, 17261387 - 17261600
Alignment:
Q  9 atggcagcttgattcttagcggaatcaccgataaacctttcatctttagcaaaagcaacaaatgaaggagtagttttgttgccttgatcattgtgtataa 108  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||| || |    
T  17261387 atggcagcttgattcttagcggcatcaccgatcaacctttcatctttagcaaaagcaacaaaagaaggagtaattttgtttccttgatcattgtgaatga 17261486  T
Q  109 tctcaactctaccatgttcttcatgccacacagcaacacatgagtacgtcgtcccaaggtctattccgatggcacatccttcttgattttttgccataat 208  Q
    |||||||||||||||||||||||||||| || |||||||| ||||| |||||||||||||||||||| |||||||| ||||| | ||| |||||||||||    
T  17261487 tctcaactctaccatgttcttcatgccatacggcaacacaagagtatgtcgtcccaaggtctattccaatggcacacccttcattattgtttgccataat 17261586  T
Q  209 cttacaatgaaaac 222  Q
    |||||||| |||||    
T  17261587 cttacaataaaaac 17261600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 12 - 175
Target Start/End: Original strand, 8647699 - 8647862
Alignment:
Q  12 gcagcttgattcttagcggaatcaccgataaacctttcatctttagcaaaagcaacaaatgaaggagtagttttgttgccttgatcattgtgtataatct 111  Q
    ||||| ||||| ||||||| |||||| || ||||||| ||| |  |  ||||||||||| ||||| |||||| |||| |||||||||||||| |||||||    
T  8647699 gcagcctgatttttagcggcatcaccaatcaacctttgatcatcggtgaaagcaacaaaagaaggtgtagttctgtttccttgatcattgtgaataatct 8647798  T
Q  112 caactctaccatgttcttcatgccacacagcaacacatgagtacgtcgtcccaaggtctattcc 175  Q
    ||||||||   ||||| ||| |||||||||||||||| || ||||| || ||||||||||||||    
T  8647799 caactctattgtgttcatcaagccacacagcaacacacgaatacgttgttccaaggtctattcc 8647862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 294 - 378
Target Start/End: Original strand, 17261633 - 17261717
Alignment:
Q  294 aactttaccttagttataaacggaagcgtgagttagaagaaaaggtctacttagggtttcttccaaagcaaaatcgttcttttat 378  Q
    |||| |||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||  ||||||||||    
T  17261633 aactctaccttggttataaactgaagcgtgagtaagaagaaaaggtctacttagggtttcttccaatgcaaaactgttcttttat 17261717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 10 - 175
Target Start/End: Complemental strand, 10493107 - 10492942
Alignment:
Q  10 tggcagcttgattcttagcggaatcaccgataaacctttcatctttagcaaaagcaacaaatgaaggagtagttttgttgccttgatcattgtgtataat 109  Q
    |||||| |||||||||||| | ||||||||| ||||||| ||| ||    ||||||||||| ||||| |||||| | || |||||||||||||| |||||    
T  10493107 tggcagattgattcttagcagcatcaccgatcaacctttgatcattgttgaaagcaacaaaagaaggtgtagttctatttccttgatcattgtgaataat 10493008  T
Q  110 ctcaactctaccatgttcttcatgccacacagcaacacatgagtacgtcgtcccaaggtctattcc 175  Q
     ||||||||    ||||| ||| |||| ||||||||||||||||| || || ||||| ||||||||    
T  10493007 ttcaactctttggtgttcatcaagccatacagcaacacatgagtaggttgttccaagatctattcc 10492942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 10 - 190
Target Start/End: Original strand, 6790406 - 6790586
Alignment:
Q  10 tggcagcttgattcttagcggaatcaccgataaacctttcatctttagcaaaagcaacaaatgaaggagtagttttgttgccttgatcattgtgtataat 109  Q
    |||||||||||| |||||| | ||||||||| |||||||  || |  |  ||||||||||| ||||| || |||||||| ||||| |||||||| |||||    
T  6790406 tggcagcttgatacttagcagcatcaccgatcaacctttggtcatcggtgaaagcaacaaaagaaggtgtggttttgttaccttggtcattgtgaataat 6790505  T
Q  110 ctcaactctaccatgttcttcatgccacacagcaacacatgagtacgtcgtcccaaggtctattccgatggcacatccttc 190  Q
    ||||||||||   ||||| ||| |||||||| ||||||| || || || || || ||||||||||| |  |||||||||||    
T  6790506 ctcaactctattgtgttcatcaagccacacaccaacacaagaatatgttgttcccaggtctattcccacagcacatccttc 6790586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 11 - 211
Target Start/End: Complemental strand, 7876939 - 7876739
Alignment:
Q  11 ggcagcttgattcttagcggaatcaccgataaacctttcatctttagcaaaagcaacaaatgaaggagtagttttgttgccttgatcattgtgtataatc 110  Q
    |||||| ||||| || || | |||||| || ||||||| ||| || |  ||||||||||| ||||| || ||| |||||||||| |||||||| |||||     
T  7876939 ggcagcctgatttttggcagcatcaccaatcaacctttgatcattcgtgaaagcaacaaaagaaggtgttgttctgttgccttgttcattgtgaataatt 7876840  T
Q  111 tcaactctaccatgttcttcatgccacacagcaacacatgagtacgtcgtcccaaggtctattccgatggcacatccttcttgattttttgccataatct 210  Q
    || ||||||   ||||| ||| |||||||||||||||| || ||||| || |||||||||||||| |  |||| |||||| |  ||||| ||||||||||    
T  7876839 tcgactctattgtgttcatcaagccacacagcaacacaggaatacgttgttccaaggtctattcccaccgcacgtccttcgtattttttcgccataatct 7876740  T
Q  211 t 211  Q
    |    
T  7876739 t 7876739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 60 - 175
Target Start/End: Complemental strand, 13332206 - 13332091
Alignment:
Q  60 aaagcaacaaatgaaggagtagttttgttgccttgatcattgtgtataatctcaactctaccatgttcttcatgccacacagcaacacatgagtacgtcg 159  Q
    ||||||||||| ||||| |||||| | || |||||||||||||| ||||||||||||||    ||||| ||| |||||||||||||||||||||| || |    
T  13332206 aaagcaacaaaagaaggtgtagttctatttccttgatcattgtgaataatctcaactctttggtgttcatcaagccacacagcaacacatgagtaggttg 13332107  T
Q  160 tcccaaggtctattcc 175  Q
    | |||||||| |||||    
T  13332106 ttccaaggtcgattcc 13332091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 60 - 177
Target Start/End: Original strand, 8655395 - 8655512
Alignment:
Q  60 aaagcaacaaatgaaggagtagttttgttgccttgatcattgtgtataatctcaactctaccatgttcttcatgccacacagcaacacatgagtacgtcg 159  Q
    ||||||||||  ||||| |||||| | ||||||||||||||||| |||||||||||||||   || || ||| ||||||||||||||||||| || || |    
T  8655395 aaagcaacaacagaaggtgtagttctattgccttgatcattgtgaataatctcaactctattgtgatcgtcaagccacacagcaacacatgaataggttg 8655494  T
Q  160 tcccaaggtctattccga 177  Q
    | || |||||||||||||    
T  8655495 ttccgaggtctattccga 8655512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 14 - 205
Target Start/End: Original strand, 3148371 - 3148562
Alignment:
Q  14 agcttgattcttagcggaatcaccgataaacctttcatctttagcaaaagcaacaaatgaaggagtagttttgttgccttgatcattgtgtataatctca 113  Q
    ||||||||||||||| | |||||| |  ||||||| ||| | ||  ||||||||||| ||||| || |||||||||||||| |||||||| |||||||||    
T  3148371 agcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggttttgttgccttggtcattgtgaataatctca 3148470  T
Q  114 actctaccatgttcttcatgccacacagcaacacatgagtacgtcgtcccaaggtctattccgatggcacatccttcttgattttttgccat 205  Q
    |||||    || || ||  |||| |||||||| || || ||||| || |||||||| ||||| |  ||||||||||| |  |||||||||||    
T  3148471 actctgttgtgctcatcgagccaaacagcaacgcacgaatacgttgttccaaggtcgattcccactgcacatccttcgtacttttttgccat 3148562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 32 - 112
Target Start/End: Original strand, 8602752 - 8602832
Alignment:
Q  32 atcaccgataaacctttcatctttagcaaaagcaacaaatgaaggagtagttttgttgccttgatcattgtgtataatctc 112  Q
    ||||||||| ||||||| ||| | || |||||||||||| |||||||||||| |||| |||||||||||||| ||||||||    
T  8602752 atcaccgatcaaccttttatcatcagtaaaagcaacaaaagaaggagtagttctgtttccttgatcattgtgaataatctc 8602832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 59 - 182
Target Start/End: Original strand, 8577334 - 8577457
Alignment:
Q  59 aaaagcaacaaatgaaggagtagttttgttgccttgatcattgtgtataatctcaactctaccatgttcttcatgccacacagcaacacatgagtacgtc 158  Q
    |||||||||| | |||||||| ||| |||| |||||||||||||||||||| || || | | | | || ||||||||| ||  ||||||||||||| |||    
T  8577334 aaaagcaacacaagaaggagtggttctgtttccttgatcattgtgtataatttctacacgatcgttttgttcatgccatactccaacacatgagtaagtc 8577433  T
Q  159 gtcccaaggtctattccgatggca 182  Q
    || |||||||| ||||| ||||||    
T  8577434 gtgccaaggtcaattccaatggca 8577457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 12 - 178
Target Start/End: Original strand, 8572588 - 8572754
Alignment:
Q  12 gcagcttgattcttagcggaatcaccgataaacctttcatctttagcaaaagcaacaaatgaaggagtagttttgttgccttgatcattgtgtataatct 111  Q
    ||||||||||| || || | ||||||||| || |||| |   |||| |||||||||| | || ||||| ||| |||| ||||| ||||||||||| || |    
T  8572588 gcagcttgatttttggcagcatcaccgatcaatctttgagaattagtaaaagcaacacaagagggagttgttctgtttccttggtcattgtgtatgattt 8572687  T
Q  112 caactctaccatgttcttcatgccacacagcaacacatgagtacgtcgtcccaaggtctattccgat 178  Q
    |||| | | ||| ||  || ||||||||  ||||||||||||| ||||| |||||||| ||||||||    
T  8572688 caacacgatcattttgctcctgccacactccaacacatgagtaagtcgtgccaaggtcaattccgat 8572754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 12 - 190
Target Start/End: Original strand, 8660242 - 8660420
Alignment:
Q  12 gcagcttgattcttagcggaatcaccgataaacctttcatctttagcaaaagcaacaaatgaaggagtagttttgttgccttgatcattgtgtataatct 111  Q
    ||||| ||||||||||| | |||||| || ||||||| ||| | ||  ||||||||||||||||| || |||||||| ||||| || ||||  || ||||    
T  8660242 gcagcctgattcttagcagcatcaccaatcaacctttgatcgtcagtgaaagcaacaaatgaaggtgttgttttgtttccttggtcgttgtagatgatct 8660341  T
Q  112 caactctaccatg-ttcttcatgccacacagcaacacatgagtacgtcgtcccaaggtctattccgatggcacatccttc 190  Q
    | |||| |   || |||| || |||||||||||||||| || || || || |||||||||||||| || |||| ||||||    
T  8660342 cgactcgattgtgattctcca-gccacacagcaacacacgaataggttgttccaaggtctattccaatagcacgtccttc 8660420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 60 - 175
Target Start/End: Original strand, 8668511 - 8668626
Alignment:
Q  60 aaagcaacaaatgaaggagtagttttgttgccttgatcattgtgtataatctcaactctaccatgttcttcatgccacacagcaacacatgagtacgtcg 159  Q
    ||||||||||| ||||| ||  ||  ||| |||||||||||||| ||||||||||||||    ||||  ||| ||||||||||||||||||| || || |    
T  8668511 aaagcaacaaaagaaggtgttattcggtttccttgatcattgtgaataatctcaactctttggtgttgatcaagccacacagcaacacatgaataggttg 8668610  T
Q  160 tcccaaggtctattcc 175  Q
    | ||||| ||||||||    
T  8668611 ttccaagatctattcc 8668626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 54 - 187
Target Start/End: Original strand, 8582703 - 8582836
Alignment:
Q  54 ttagcaaaagcaacaaatgaaggagtagttttgttgccttgatcattgtgtataatctcaactctaccatgttcttcatgccacacagcaacacatgagt 153  Q
    |||| |||||||||| | ||||| || |||||||| ||||||||||||||||| || || || | | | | ||  || ||||||||  ||||||||||||    
T  8582703 ttagtaaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgtatgatttccacacgatcgttttgctcctgccacactccaacacatgagt 8582802  T
Q  154 acgtcgtcccaaggtctattccgatggcacatcc 187  Q
    | || || |||||||| |||||||| ||| ||||    
T  8582803 aggttgtaccaaggtcaattccgattgcaaatcc 8582836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 112
Target Start/End: Original strand, 8591416 - 8591496
Alignment:
Q  32 atcaccgataaacctttcatctttagcaaaagcaacaaatgaaggagtagttttgttgccttgatcattgtgtataatctc 112  Q
    |||||| || ||||||| ||| |||| |||||||||||| ||||| ||| || | || |||||||||||||| ||||||||    
T  8591416 atcaccaatcaacctttgatcattagtaaaagcaacaaaagaaggtgtaattctatttccttgatcattgtgaataatctc 8591496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 6e-29; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 60 - 189
Target Start/End: Original strand, 28220993 - 28221122
Alignment:
Q  60 aaagcaacaaatgaaggagtagttttgttgccttgatcattgtgtataatctcaactctaccatgttcttcatgccacacagcaacacatgagtacgtcg 159  Q
    ||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||| |||   ||||| || |||||||||||||||||||| ||||| |    
T  28220993 aaagcaacaaaagaaggagttgttttgttgccttgatcattgtgaataatctcaaccctattgtgttcatcttgccacacagcaacacatgaatacgttg 28221092  T
Q  160 tcccaaggtctattccgatggcacatcctt 189  Q
    | ||||| |||||||| |  ||||||||||    
T  28221093 ttccaagatctattcccacagcacatcctt 28221122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 17 - 175
Target Start/End: Complemental strand, 42554286 - 42554128
Alignment:
Q  17 ttgattcttagcggaatcaccgataaacctttcatctttagcaaaagcaacaaatgaaggagtagttttgttgccttgatcattgtgtataatctcaact 116  Q
    ||||| |||||| | |||||| || ||||||||||  | || |||||||||||| ||||| || ||||||||||||||||||||||| ||||||||||||    
T  42554286 ttgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtgttgttttgttgccttgatcattgtgaataatctcaact 42554187  T
Q  117 ctaccatgttcttcatgccacacagcaacacatgagtacgtcgtcccaaggtctattcc 175  Q
    |||   ||||| || | |||||||| |||||| || ||||| || ||||||||||||||    
T  42554186 ctattttgttcatcttcccacacagtaacacacgaatacgttgttccaaggtctattcc 42554128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 17 - 175
Target Start/End: Original strand, 43745827 - 43745982
Alignment:
Q  17 ttgattcttagcggaatcaccgataaacctttcatctttagcaaaagcaacaaatgaaggagtagttttgttgccttgatcattgtgtataatctcaact 116  Q
    |||||||||||| |  ||||| || ||||||||||  | || |||||||||||| ||||   | ||||||||||||||||||||||| ||||||||||||    
T  43745827 ttgattcttagcagcgtcacctatcaacctttcatgatcagtaaaagcaacaaaagaag---ttgttttgttgccttgatcattgtgaataatctcaact 43745923  T
Q  117 ctaccatgttcttcatgccacacagcaacacatgagtacgtcgtcccaaggtctattcc 175  Q
    |||   ||||| || ||||||||||||||||| || ||||| || ||||||||||||||    
T  43745924 ctattttgttcatcttgccacacagcaacacacgaatacgttgttccaaggtctattcc 43745982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 11 - 175
Target Start/End: Original strand, 15596056 - 15596220
Alignment:
Q  11 ggcagcttgattcttagcggaatcaccgataaacctttcatctttagcaaaagcaacaaatgaaggagtagttttgttgccttgatcattgtgtataatc 110  Q
    |||||||||| ||||||| | |||||| || ||||||| ||| ||||  |||| |||||| ||||| ||| || |||| ||||| |||||||| ||||||    
T  15596056 ggcagcttgactcttagcagcatcaccaatcaacctttgatcattagtgaaagaaacaaaagaaggtgtaattctgtttccttggtcattgtggataatc 15596155  T
Q  111 tcaactctaccatgttcttcatgccacacagcaacacatgagtacgtcgtcccaaggtctattcc 175  Q
    || ||||||   ||||| ||| |||||||||||||||| || ||||| || ||||||||||||||    
T  15596156 tcgactctattctgttcatcaagccacacagcaacacaagaatacgttgttccaaggtctattcc 15596220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 12 - 175
Target Start/End: Complemental strand, 34465352 - 34465189
Alignment:
Q  12 gcagcttgattcttagcggaatcaccgataaacctttcatctttagcaaaagcaacaaatgaaggagtagttttgttgccttgatcattgtgtataatct 111  Q
    |||| |||||||||||| | || |||||| || |||| ||| | || |||||||||||| ||||| || ||| |||| ||||| |||||||  |||||||    
T  34465352 gcagtttgattcttagcagcattaccgatcaatctttgatcatgagtaaaagcaacaaaagaaggtgtggttgtgttaccttggtcattgtcaataatct 34465253  T
Q  112 caactctaccatgttcttcatgccacacagcaacacatgagtacgtcgtcccaaggtctattcc 175  Q
    | |||||||  |||| ||| ||||| || |||||||||||||| || || ||||||||||||||    
T  34465252 ctactctactgtgttgttcctgccatactgcaacacatgagtaggttgtgccaaggtctattcc 34465189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 10 - 175
Target Start/End: Complemental strand, 4677646 - 4677481
Alignment:
Q  10 tggcagcttgattcttagcggaatcaccgataaacctttcatctttagcaaaagcaacaaatgaaggagtagttttgttgccttgatcattgtgtataat 109  Q
    |||||| |||||||||||| | || ||| || ||||||| ||| | || |||||||||||| ||||| || |||||||||||||| |||||||  |||||    
T  4677646 tggcagattgattcttagcagcattaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggtgttgttttgttgccttgttcattgtaaataat 4677547  T
Q  110 ctcaactctaccatg-ttcttcatgccacacagcaacacatgagtacgtcgtcccaaggtctattcc 175  Q
    ||| |||||    || |||| || ||||||||||||||||||| || || || ||||| ||||||||    
T  4677546 ctccactctgttgtgattctcca-gccacacagcaacacatgaataagtagttccaagatctattcc 4677481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 12 - 175
Target Start/End: Complemental strand, 12258018 - 12257855
Alignment:
Q  12 gcagcttgattcttagcggaatcaccgataaacctttcatctttagcaaaagcaacaaatgaaggagtagttttgttgccttgatcattgtgtataatct 111  Q
    ||||||||||||||||| | |||||| || ||||||| |||||||| |||||||||| | ||||| || ||| |||| |||||||| ||||| || ||||    
T  12258018 gcagcttgattcttagcagcatcaccaatcaacctttgatctttagtaaaagcaacacaagaaggcgttgttctgtttccttgatcgttgtgaatgatct 12257919  T
Q  112 caactctaccatgttcttcatgccacacagcaacacatgagtacgtcgtcccaaggtctattcc 175  Q
    || ||| || || || ||| ||||| |||||||| ||||| ||||| || |||||||| |||||    
T  12257918 cagctcgacaatattgttcctgccaaacagcaacgcatgaatacgttgtgccaaggtcaattcc 12257855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 60 - 190
Target Start/End: Original strand, 14705509 - 14705639
Alignment:
Q  60 aaagcaacaaatgaaggagtagttttgttgccttgatcattgtgtataatctcaactctaccatgttcttcatgccacacagcaacacatgagtacgtcg 159  Q
    ||||||||||| |||||||| ||| | ||||||||||| ||||| || || ||||||| |  ||||| ||| ||||| || ||||||||||||||||| |    
T  14705509 aaagcaacaaaagaaggagttgttctattgccttgatcgttgtgaatgatttcaactcgataatgttgttcctgccatactgcaacacatgagtacgttg 14705608  T
Q  160 tcccaaggtctattccgatggcacatccttc 190  Q
    | |||||||||||||| |  |||||||||||    
T  14705609 taccaaggtctattcccacagcacatccttc 14705639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 12 - 192
Target Start/End: Complemental strand, 12244507 - 12244327
Alignment:
Q  12 gcagcttgattcttagcggaatcaccgataaacctttcatctttagcaaaagcaacaaatgaaggagtagttttgttgccttgatcattgtgtataatct 111  Q
    ||||||||||| ||||| | |||||| |||||||||| ||||| ||  ||||||||| | ||||| || ||| ||||||| ||||| ||||| || || |    
T  12244507 gcagcttgatttttagcagcatcaccaataaacctttgatcttcagtgaaagcaacacaagaaggtgttgttctgttgccctgatcgttgtgaatgattt 12244408  T
Q  112 caactctaccatgttcttcatgccacacagcaacacatgagtacgtcgtcccaaggtctattccgatggcacatccttctt 192  Q
    |||| | |   |||| ||| ||||| || ||||||||||| ||||| || |||||||||||||| | ||||| ||||||||    
T  12244407 caacacgagagtgttgttcctgccatactgcaacacatgaatacgttgtaccaaggtctattcccacggcacgtccttctt 12244327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 14 - 175
Target Start/End: Original strand, 43626320 - 43626481
Alignment:
Q  14 agcttgattcttagcggaatcaccgataaacctttcatctttagcaaaagcaacaaatgaaggagtagttttgttgccttgatcattgtgtataatctca 113  Q
    |||||||  |||||| | |||||| || |||||||  || ||||  |||| |||||| ||||| |||||| |||| ||||| |||||||| ||||||||     
T  43626320 agcttgacccttagcagcatcaccaatcaacctttggtccttagtgaaagaaacaaaagaaggtgtagttctgtttccttggtcattgtggataatctct 43626419  T
Q  114 actctaccatgttcttcatgccacacagcaacacatgagtacgtcgtcccaaggtctattcc 175  Q
    ||||| |  | ||| ||| |||||||||||| ||| || ||||| || ||||||||||||||    
T  43626420 actcttctgttttcatcaagccacacagcaatacaagaatacgttgttccaaggtctattcc 43626481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 11 - 211
Target Start/End: Complemental strand, 16656705 - 16656505
Alignment:
Q  11 ggcagcttgattcttagcggaatcaccgataaacctttcatctttagcaaaagcaacaaatgaaggagtagttttgttgccttgatcattgtgtataatc 110  Q
    |||| ||||||||||||| | ||||||||| ||||||| ||| | ||  ||||||||||| ||||| || ||| |||| || || ||||||||||| |||    
T  16656705 ggcaacttgattcttagcagcatcaccgatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccctggtcattgtgtatgatc 16656606  T
Q  111 tcaactctaccatgttcttcatgccacacagcaacacatgagtacgtcgtcccaaggtctattccgatggcacatccttcttgattttttgccataatct 210  Q
    ||  ||||    ||    ||   |||||||||||||||||| || || || |||||||||||||| |  |||| |||||| || ||||||||||||||||    
T  16656605 tctgctctgttgtgacggtccatccacacagcaacacatgaataagttgttccaaggtctattcccactgcacgtccttcatgtttttttgccataatct 16656506  T
Q  211 t 211  Q
    |    
T  16656505 t 16656505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 12 - 118
Target Start/End: Complemental strand, 16661170 - 16661064
Alignment:
Q  12 gcagcttgattcttagcggaatcaccgataaacctttcatctttagcaaaagcaacaaatgaaggagtagttttgttgccttgatcattgtgtataatct 111  Q
    |||||||||| |||||| | | ||||||  ||||||| | | | || |||||||||||| ||||| ||| |||||||||||| ||| ||||| |||||||    
T  16661170 gcagcttgatccttagcagcaccaccgaccaacctttgagcatcagtaaaagcaacaaaagaaggtgtaattttgttgccttcatcgttgtggataatct 16661071  T
Q  112 caactct 118  Q
    |||||||    
T  16661070 caactct 16661064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 12 - 175
Target Start/End: Original strand, 7543275 - 7543438
Alignment:
Q  12 gcagcttgattcttagcggaatcaccgataaacctttcatctttagcaaaagcaacaaatgaaggagtagttttgttgccttgatcattgtgtataatct 111  Q
    |||||||||||||||||   ||||||||| ||||| | || ||  |  ||||||||||| ||||| || ||| |||||||||| || ||||| || || |    
T  7543275 gcagcttgattcttagcattatcaccgatcaacctctgattttcggtgaaagcaacaaaagaaggtgttgttctgttgccttggtcgttgtgaatgattt 7543374  T
Q  112 caactctaccatgttcttcatgccacacagcaacacatgagtacgtcgtcccaaggtctattcc 175  Q
    |||||| |   ||||  || ||||| || |||||||| |||||||| || ||||||||||||||    
T  7543375 caactcgatagtgttgatcctgccatactgcaacacaagagtacgttgtgccaaggtctattcc 7543438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 172
Target Start/End: Original strand, 12235796 - 12235956
Alignment:
Q  12 gcagcttgattcttagcggaatcaccgataaacctttcatctttagcaaaagcaacaaatgaaggagtagttttgttgccttgatcattgtgtataatct 111  Q
    ||||||||||||||||| | |||||| || ||||| | || ||  |  ||||||||||| ||||| || ||| | ||||||||||| ||||| || ||||    
T  12235796 gcagcttgattcttagcagcatcaccaatcaacctctgattttcggtgaaagcaacaaaagaaggggttgttctattgccttgatcgttgtgaatgatct 12235895  T
Q  112 caactctaccatgttcttcatgccacacagcaacacatgagtacgtcgtcccaaggtctat 172  Q
    |||||| |   || | ||| ||||| || ||||||||||| || || || |||||||||||    
T  12235896 caactcgagagtgctgttcctgccatactgcaacacatgaatatgttgtaccaaggtctat 12235956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 12 - 183
Target Start/End: Original strand, 35133452 - 35133623
Alignment:
Q  12 gcagcttgattcttagcggaatcaccgataaacctttcatctttagcaaaagcaacaaatgaaggagtagttttgttgccttgatcattgtgtataatct 111  Q
    ||||||||||||||||| | ||||||||| ||||||| ||| ||||  ||||||| | | ||||| || |||||||||| |||||| ||||| || || |    
T  35133452 gcagcttgattcttagcagcatcaccgatcaacctttgatccttagtgaaagcaatacaagaaggtgttgttttgttgctttgatcgttgtgaatgattt 35133551  T
Q  112 caactctaccatgttcttcatgccacacagcaacacatgagtacgtcgtcccaaggtctattccgatggcac 183  Q
    | |||| |   |||| ||| ||||| || ||||||||||| ||||| || || |||||||||||||| ||||    
T  35133552 cgactcgatagtgttgttcttgccatactgcaacacatgaatacgttgttccgaggtctattccgatagcac 35133623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 60 - 205
Target Start/End: Complemental strand, 9323120 - 9322975
Alignment:
Q  60 aaagcaacaaatgaaggagtagttttgttgccttgatcattgtgtataatctcaactctaccatgttcttcatgccacacagcaacacatgagtacgtcg 159  Q
    ||||||||||| ||||| || |||  ||| |||||||||||||| ||||||||||||||    ||||  ||| |||||||||||||||| || || || |    
T  9323120 aaagcaacaaaagaaggtgttgttcggtttccttgatcattgtgaataatctcaactctttggtgttgatcaagccacacagcaacacaagaataggttg 9323021  T
Q  160 tcccaaggtctattccgatggcacatccttcttgattttttgccat 205  Q
    | ||||| ||||| || |  |||| |||||| || | |||||||||    
T  9323020 ttccaagatctatacccactgcacgtccttcgtgttcttttgccat 9322975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 60 - 205
Target Start/End: Complemental strand, 9335092 - 9334947
Alignment:
Q  60 aaagcaacaaatgaaggagtagttttgttgccttgatcattgtgtataatctcaactctaccatgttcttcatgccacacagcaacacatgagtacgtcg 159  Q
    ||||||||||| ||||| || |||  ||| |||||||||||||| ||||||||||||||    ||||  ||| |||||||||||||||| || || || |    
T  9335092 aaagcaacaaaagaaggtgttgttcggtttccttgatcattgtgaataatctcaactctttggtgttgatcaagccacacagcaacacaagaataggttg 9334993  T
Q  160 tcccaaggtctattccgatggcacatccttcttgattttttgccat 205  Q
    | ||||| ||||| || |  |||| |||||| || | |||||||||    
T  9334992 ttccaagatctatacccactgcacgtccttcgtgttcttttgccat 9334947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 60 - 205
Target Start/End: Complemental strand, 9377599 - 9377454
Alignment:
Q  60 aaagcaacaaatgaaggagtagttttgttgccttgatcattgtgtataatctcaactctaccatgttcttcatgccacacagcaacacatgagtacgtcg 159  Q
    ||||||||||| ||||| || |||  ||| |||||||||||||| ||||||||||||||    ||||  ||| |||||||||||||||| || || || |    
T  9377599 aaagcaacaaaagaaggtgttgttcggtttccttgatcattgtgaataatctcaactctttggtgttgatcaagccacacagcaacacaagaataggttg 9377500  T
Q  160 tcccaaggtctattccgatggcacatccttcttgattttttgccat 205  Q
    | ||||| ||||| || |  |||| |||||| || | |||||||||    
T  9377499 ttccaagatctatacccactgcacgtccttcgtgttcttttgccat 9377454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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