View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5733-Insertion-5 (Length: 374)
Name: NF5733-Insertion-5
Description: NF5733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5733-Insertion-5 |
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Alignment Details
Target: chr5 (Bit Score: 111; Significance: 6e-56; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 249 - 359
Target Start/End: Complemental strand, 9604200 - 9604090
Alignment:
| Q |
249 |
ttatgacttttgatgatcaagaatagatttgaaacttacttgtagaaggcgaatcacacaagggtttactccagcaaccatctctcttccaaattcttca |
348 |
Q |
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| T |
9604200 |
ttatgacttttgatgatcaagaatagatttgaaacttacttgtagaaggcgaatcacacaagggtttactccagcaaccatctctcttccaaattcttca |
9604101 |
T |
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| Q |
349 |
tcagtcatcca |
359 |
Q |
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| T |
9604100 |
tcagtcatcca |
9604090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 80 - 201
Target Start/End: Complemental strand, 9604371 - 9604249
Alignment:
| Q |
80 |
tattcatcattttacaaccgatttctttcaaaaactacaatatcaaactcttatcattaaattgtaa-cnnnnnnnnnnctcttatcattgaacagaccc |
178 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||| |
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| T |
9604371 |
tattcatcattttacaaccgatttctttcaaaaactacaatatcaaactcttatcattaaattgtaaccaagaaaaaaactcttatcattaaacagaccc |
9604272 |
T |
|
| Q |
179 |
cctcattgatattgatacagtag |
201 |
Q |
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|||||||||||| |||||||||| |
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| T |
9604271 |
cctcattgatatagatacagtag |
9604249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 39 - 78
Target Start/End: Complemental strand, 9604430 - 9604391
Alignment:
| Q |
39 |
taaaaatatatattaaattgaggagtgtggaaagcattat |
78 |
Q |
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| T |
9604430 |
taaaaatatatattaaactgaggaatgtggaaagcattat |
9604391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 267 - 359
Target Start/End: Original strand, 6457525 - 6457617
Alignment:
| Q |
267 |
aagaatagatttgaaacttacttgtagaaggcgaatcacacaagggtttactccagcaaccatctctcttccaaattcttcatcagtcatcca |
359 |
Q |
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| T |
6457525 |
aagaatacatttggtacatacttgaagaaggcgaatcacattaggatttacaccagcaaccatctctcttccaaattcttcatctgtcatcca |
6457617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 282 - 353
Target Start/End: Original strand, 6451351 - 6451422
Alignment:
| Q |
282 |
acttacttgtagaaggcgaatcacacaagggtttactccagcaaccatctctcttccaaattcttcatcagt |
353 |
Q |
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| T |
6451351 |
acttacttgaagaagacgaatcacattaggatttacaccagcaagcatctctcttccaaattcttcatcagt |
6451422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 359
Target Start/End: Original strand, 6263800 - 6263846
Alignment:
| Q |
313 |
tttactccagcaaccatctctcttccaaattcttcatcagtcatcca |
359 |
Q |
| |
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||||| ||||||| ||||||||||||||||| |||||||||||||| |
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| T |
6263800 |
tttacaccagcaagaatctctcttccaaattcatcatcagtcatcca |
6263846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 359
Target Start/End: Original strand, 6289537 - 6289577
Alignment:
| Q |
319 |
ccagcaaccatctctcttccaaattcttcatcagtcatcca |
359 |
Q |
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||||||| |||||||||| ||||||||||||||||||||| |
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| T |
6289537 |
ccagcaatcatctctcttgtaaattcttcatcagtcatcca |
6289577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 359
Target Start/End: Original strand, 6321919 - 6321959
Alignment:
| Q |
319 |
ccagcaaccatctctcttccaaattcttcatcagtcatcca |
359 |
Q |
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||||||| |||||| ||| |||||||||||||||||||||| |
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| T |
6321919 |
ccagcaatcatctcccttgcaaattcttcatcagtcatcca |
6321959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 299 - 359
Target Start/End: Complemental strand, 36744727 - 36744667
Alignment:
| Q |
299 |
gaatcacacaagggtttactccagcaaccatctctcttccaaattcttcatcagtcatcca |
359 |
Q |
| |
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|||||||||| || ||||| ||||||| ||| |||||| |||||||||||||||||||||| |
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| T |
36744727 |
gaatcacacatggatttacaccagcaagcatttctcttgcaaattcttcatcagtcatcca |
36744667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 359
Target Start/End: Original strand, 42693655 - 42693701
Alignment:
| Q |
313 |
tttactccagcaaccatctctcttccaaattcttcatcagtcatcca |
359 |
Q |
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||||||||||| | ||| |||||| |||||||||||||||||||||| |
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| T |
42693655 |
tttactccagctagcatttctcttgcaaattcttcatcagtcatcca |
42693701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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