View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5733-Insertion-6 (Length: 164)

Name: NF5733-Insertion-6
Description: NF5733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5733-Insertion-6
NF5733-Insertion-6
[»] chr2 (4 HSPs)
chr2 (6-164)||(40030339-40030497)
chr2 (14-89)||(30905669-30905744)
chr2 (14-89)||(30916372-30916447)
chr2 (14-89)||(30925505-30925580)
[»] chr8 (7 HSPs)
chr8 (14-89)||(29255480-29255555)
chr8 (7-89)||(29248853-29248935)
chr8 (6-98)||(29211107-29211199)
chr8 (16-98)||(29228085-29228167)
chr8 (30-87)||(29236001-29236058)
chr8 (30-87)||(29280734-29280791)
chr8 (8-87)||(29367510-29367589)


Alignment Details
Target: chr2 (Bit Score: 118; Significance: 2e-60; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 6 - 164
Target Start/End: Complemental strand, 40030497 - 40030339
Alignment:
Q  6 cagaatctacaacttgtatatttctaaaatatgaagcttttccataaccctcttctggaaaatatccactacccatttgggttgttgtgtgagacccnnn 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||       
T  40030497 cagaatctacaacttgtatatttctaaaatatgaagcttttccataaccctcatctggaaaatgtccactacccatttgggttgttgtgtgagacccttt 40030398  T
Q  106 nnnngttgtaaacacttctccaccaaaatctatatgagttgcaccatcatttaaatgtg 164  Q
        |||||| |||||||||||||||||||||||| |||||||||||||||||| ||||    
T  40030397 ttttgttgtagacacttctccaccaaaatctatatcagttgcaccatcatttaagtgtg 40030339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 30905669 - 30905744
Alignment:
Q  14 acaacttgtatatttctaaaatatgaagcttttccataaccctcttctggaaaatatccactacccatttgggttg 89  Q
    |||||||| |||||  |||||||||||||||||  | ||| ||| |||| ||||| ||||||||||||||||||||    
T  30905669 acaacttgcatattcttaaaatatgaagcttttgaagaacgctcatctgcaaaatgtccactacccatttgggttg 30905744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 30916372 - 30916447
Alignment:
Q  14 acaacttgtatatttctaaaatatgaagcttttccataaccctcttctggaaaatatccactacccatttgggttg 89  Q
    |||||||||| ||| ||||||  ||||||||||  | ||||||| |||| ||||| ||||||||||||||||||||    
T  30916372 acaacttgtaaattcctaaaaagtgaagcttttgaaaaaccctcatctgcaaaatgtccactacccatttgggttg 30916447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 30925505 - 30925580
Alignment:
Q  14 acaacttgtatatttctaaaatatgaagcttttccataaccctcttctggaaaatatccactacccatttgggttg 89  Q
    |||||||| ||||  ||||||||||||||||||  | ||||||| || | ||||| ||||||||||||||||||||    
T  30925505 acaacttgcatatccctaaaatatgaagcttttgaagaaccctcatcagcaaaatgtccactacccatttgggttg 30925580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 7e-26; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 7e-26
Query Start/End: Original strand, 14 - 89
Target Start/End: Complemental strand, 29255555 - 29255480
Alignment:
Q  14 acaacttgtatatttctaaaatatgaagcttttccataaccctcttctggaaaatatccactacccatttgggttg 89  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||    
T  29255555 acaacttgcatatttctaaaatatgaagcttttccataaccctcttcagcaaaatgtccactacccatttgggttg 29255480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 7 - 89
Target Start/End: Complemental strand, 29248935 - 29248853
Alignment:
Q  7 agaatctacaacttgtatatttctaaaatatgaagcttttccataaccctcttctggaaaatatccactacccatttgggttg 89  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||||| || | ||||| ||||||||||||||||||||    
T  29248935 agaacctacaacttgcatatttctaaaatatgaagcttttccataaccctcctcagcaaaatgtccactacccatttgggttg 29248853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 6 - 98
Target Start/End: Original strand, 29211107 - 29211199
Alignment:
Q  6 cagaatctacaacttgtatatttctaaaatatgaagcttttccataaccctcttctggaaaatatccactacccatttgggttgttgtgtgag 98  Q
    ||||||| |||||||| ||||| ||||| |||| ||||||| || |||||||||| | ||||| |||||||||||||||||||| ||||||||    
T  29211107 cagaatccacaacttgcatattcctaaagtatgcagcttttgcaaaaccctcttcagcaaaatgtccactacccatttgggttgatgtgtgag 29211199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 29228167 - 29228085
Alignment:
Q  16 aacttgtatatttctaaaatatgaagcttttccataaccctcttctggaaaatatccactacccatttgggttgttgtgtgag 98  Q
    ||||||||||||||||| |||||| ||||||| | ||||||| || | ||||| |||||| |||||||||||||  |||||||    
T  29228167 aacttgtatatttctaatatatgacgcttttctaaaaccctcctcggcaaaatgtccactccccatttgggttgacgtgtgag 29228085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 29236058 - 29236001
Alignment:
Q  30 taaaatatgaagcttttccataaccctcttctggaaaatatccactacccatttgggt 87  Q
    ||||||||| |||||||||||||  ||| || | ||||| ||||||||||||||||||    
T  29236058 taaaatatgcagcttttccataattctcctcagcaaaatgtccactacccatttgggt 29236001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 29280791 - 29280734
Alignment:
Q  30 taaaatatgaagcttttccataaccctcttctggaaaatatccactacccatttgggt 87  Q
    ||||||||| |||||||||||||  ||| || | ||||| ||||||||||||||||||    
T  29280791 taaaatatgcagcttttccataattctcctcagcaaaatgtccactacccatttgggt 29280734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 8 - 87
Target Start/End: Complemental strand, 29367589 - 29367510
Alignment:
Q  8 gaatctacaacttgtatatttctaaaatatgaagcttttccataaccctcttctggaaaatatccactacccatttgggt 87  Q
    ||||||||||||   |||||  ||||||||| |||||||| | ||||||| || || || | ||||||||||||||||||    
T  29367589 gaatctacaactccaatattcttaaaatatgcagcttttctaaaaccctcatcaggcaagtgtccactacccatttgggt 29367510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University