View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5733_high_10 (Length: 238)
Name: NF5733_high_10
Description: NF5733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5733_high_10 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 24615276 - 24615052
Alignment:
| Q |
18 |
gcatgtgccatcttaaacctttatcttcattcattcaatcatcttctttttcagtcaaaaattctcatcacatttcccaaatcatacatttctaatttca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24615276 |
gcatgtgccatcttaaacctttatcttcattcattcaatcatcttctttttcagtcaaaaattctcatcacatttcccaaatcatacatttctaatttca |
24615177 |
T |
|
| Q |
118 |
ccaccattcacacgtttcttctccctttagtactatatatccttttttctctctataacaaactattcctc----acactctttctattttcccctcaaa |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
24615176 |
ccaccattcacacgtttcttctccctttagtactatatatccttttttctctctataacaaactattcctcacacacactctttctattttcccctcaaa |
24615077 |
T |
|
| Q |
214 |
attcccttctctttttgtatttttc |
238 |
Q |
| |
|
|||| ||||||||||||||| |||| |
|
|
| T |
24615076 |
attctcttctctttttgtatctttc |
24615052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University