View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5733_high_5 (Length: 325)

Name: NF5733_high_5
Description: NF5733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5733_high_5
NF5733_high_5
[»] chr2 (1 HSPs)
chr2 (23-325)||(37612139-37612441)


Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 23 - 325
Target Start/End: Complemental strand, 37612441 - 37612139
Alignment:
Q  23 acgaacgtttgcaagaatatttcatttcttgtaaatccattggccttctattctatacatacccctttttaggatgaaaccttgtaagttgtaacaatag 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37612441 acgaacgtttgcaagaatatttcatttcttgtaaatccattggccttctattctatacatacccctttttaggatgaaaccttgtaagttgtaacaatag 37612342  T
Q  123 tgaaactggcaaacaacattcccaacagaaccctcgtcccaaaatcaaagctacatgggcctatatatatgtggatgcttccaagagggtttcaaaatta 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  37612341 tgaaactggcaaacaacattcccaacagaaccctcgtcccaaaatcaaagctacatgggcctatatatatgtggatgcttccaagagggtttcaaaattg 37612242  T
Q  223 gagtatgatggttgaagtggtagggtgcaaaaagtctaggttggaattatgcattgtagaacttaatagttctttaaatatatactatgatgacaataat 322  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  37612241 gagtatgatggttgaagtggtagggtgcaaaaagtctaggttggaattatgcattgtagaacttaataattctttaaatatatactatgatgacaataat 37612142  T
Q  323 att 325  Q
    |||    
T  37612141 att 37612139  T

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