View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5733_low_1 (Length: 534)

Name: NF5733_low_1
Description: NF5733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5733_low_1
NF5733_low_1
[»] chr5 (18 HSPs)
chr5 (17-518)||(6988953-6989457)
chr5 (17-315)||(21600516-21600817)
chr5 (17-170)||(1157711-1157864)
chr5 (50-250)||(41356037-41356238)
chr5 (100-315)||(38959174-38959387)
chr5 (29-321)||(18696318-18696617)
chr5 (69-321)||(7269967-7270224)
chr5 (17-172)||(27170601-27170768)
chr5 (66-307)||(27170662-27170909)
chr5 (69-314)||(26656047-26656299)
chr5 (69-314)||(26927634-26927886)
chr5 (66-172)||(7767579-7767685)
chr5 (69-314)||(6030877-6031126)
chr5 (66-179)||(1377684-1377799)
chr5 (17-108)||(38958632-38958723)
chr5 (203-314)||(1157868-1157980)
chr5 (255-321)||(41356940-41357006)
chr5 (17-70)||(7767518-7767571)
[»] chr2 (11 HSPs)
chr2 (23-314)||(17282435-17282727)
chr2 (23-314)||(1552084-1552375)
chr2 (17-307)||(3920935-3921225)
chr2 (17-321)||(1894738-1895036)
chr2 (66-321)||(17374628-17374885)
chr2 (66-321)||(11163591-11163843)
chr2 (69-321)||(4868942-4869198)
chr2 (226-321)||(34659579-34659677)
chr2 (255-314)||(30799268-30799327)
chr2 (69-103)||(34659786-34659820)
chr2 (124-172)||(34659739-34659787)
[»] chr4 (12 HSPs)
chr4 (23-315)||(53201585-53201877)
chr4 (17-315)||(47518942-47519238)
chr4 (17-321)||(31360553-31360858)
chr4 (17-200)||(34227484-34227668)
chr4 (66-321)||(14566531-14566797)
chr4 (66-286)||(23054823-23055046)
chr4 (23-70)||(6409594-6409641)
chr4 (226-313)||(24958268-24958355)
chr4 (85-150)||(6409488-6409554)
chr4 (92-151)||(54230195-54230255)
chr4 (85-171)||(24958162-24958248)
chr4 (230-321)||(34227681-34227772)
[»] chr7 (8 HSPs)
chr7 (17-321)||(11698834-11699138)
chr7 (67-165)||(29550068-29550166)
chr7 (69-314)||(3301744-3301996)
chr7 (66-167)||(1778049-1778151)
chr7 (66-172)||(39020736-39020855)
chr7 (23-70)||(1778159-1778206)
chr7 (17-70)||(3302007-3302060)
chr7 (256-320)||(1777892-1777956)
[»] chr1 (11 HSPs)
chr1 (17-321)||(25790951-25791255)
chr1 (69-314)||(615060-615310)
chr1 (17-117)||(34117577-34117677)
chr1 (100-314)||(34653210-34653429)
chr1 (66-290)||(39709551-39709781)
chr1 (85-315)||(11408355-11408589)
chr1 (134-321)||(27340198-27340389)
chr1 (66-111)||(34654463-34654508)
chr1 (94-314)||(6504324-6504548)
chr1 (217-321)||(34117412-34117517)
chr1 (17-70)||(34654516-34654569)
[»] chr6 (8 HSPs)
chr6 (47-295)||(20739948-20740196)
chr6 (143-321)||(1869249-1869427)
chr6 (29-172)||(3524057-3524213)
chr6 (66-172)||(34213936-34214042)
chr6 (17-172)||(21880890-21881049)
chr6 (66-314)||(21880758-21880988)
chr6 (257-315)||(22577308-22577366)
chr6 (106-150)||(11139610-11139654)
[»] chr8 (6 HSPs)
chr8 (66-314)||(20860618-20860867)
chr8 (66-314)||(10408145-10408396)
chr8 (113-320)||(5993937-5994148)
chr8 (23-315)||(6443329-6443643)
chr8 (23-70)||(5994189-5994236)
chr8 (66-96)||(5994151-5994181)
[»] chr3 (10 HSPs)
chr3 (66-321)||(43275263-43275521)
chr3 (70-315)||(18270266-18270513)
chr3 (66-165)||(893491-893590)
chr3 (84-314)||(3364057-3364291)
chr3 (230-321)||(893671-893762)
chr3 (69-113)||(3576867-3576911)
chr3 (256-314)||(50735383-50735441)
chr3 (256-314)||(50777414-50777472)
chr3 (255-315)||(2566832-2566892)
chr3 (18-70)||(43275529-43275581)
[»] scaffold0005 (1 HSPs)
scaffold0005 (66-321)||(250578-250844)
[»] scaffold0341 (1 HSPs)
scaffold0341 (94-314)||(6007-6231)
[»] scaffold0009 (1 HSPs)
scaffold0009 (92-172)||(53927-54008)


Alignment Details
Target: chr5 (Bit Score: 369; Significance: 0; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 17 - 518
Target Start/End: Complemental strand, 6989457 - 6988953
Alignment:
Q  17 tgtggatggtagaagttgtttttgtggcagttgtgatgatgcttgaggattttgtttatgttgtttcgttgatcgtggtgttagctttgttttggtgttt 116  Q
    ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  6989457 tgtgggtggtagaagttgtttttgtggcagttgtgacgatgcttgaggattttgtttatgttgtttcgttgatcgtggtgttagctttgtttttgtgttt 6989358  T
Q  117 ctatttattgatttcgaagatagccctttgttaggaggcgtttcctataggtttttggattttctttattttcactagtgtatgagtttttcattggaga 216  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||    
T  6989357 ctatttattgatttcggagatagccctttgttaggagacgtttcctataggtttttggattttctttattttcacaggtgtatgagtttttcattgggga 6989258  T
Q  217 cttcccatcatcctttgtttgttgctaccgtaagatttctagcctagcactccttgtgttggttaagattcattcctatcttaataaattccattttagg 316  Q
    |||||||||||||||||||||||||||| ||||||  |||| ||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||    
T  6989257 cttcccatcatcctttgtttgttgctactgtaagacctctaacctagcactccttatgttggttaagattcattgctatcttaataaattctattttagg 6989158  T
Q  317 ttttt---nnnnnnnnnnnnnnttacaatccataaattaacactatatatccttctatatatttaattgtttaaaactgatatgaagttattttaaaacc 413  Q
    |||||                 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  6989157 tttttcaaaaaaaaataaaaatttacaatccataaattaacactatatatccttctatatatttaattgtttaaaactgatatgaagttatttttaaacc 6989058  T
Q  414 aaatccaactacaaacagtcaaacactatgatcttaatctttaaatctaataatctaatcacatcaaaatcaattcaaacaatttcatgtgaaatgcgat 513  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||    
T  6989057 aaatccaactacaaacagtcaaacactatgatcttaatctttacatccaataatctaatcacatcaaaatcaattcaaataatttcatgtgaaatgtgat 6988958  T
Q  514 atttg 518  Q
    |||||    
T  6988957 atttg 6988953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 17 - 315
Target Start/End: Complemental strand, 21600817 - 21600516
Alignment:
Q  17 tgtggatggtagaagttgtttttgtggcagttgtgatgatgcttgaggattttgtttatgttgtttcgttgatcgtggtgttagctttgttttggtgttt 116  Q
    ||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  21600817 tgtgggtggtagaagttgtttttgtggcagttgtgacgatgtttgaggattttgtttatgttgtttcgttgttcgtgatgttagctttgttttggtgttt 21600718  T
Q  117 ctatttattgatttcgaagatagccctttgttaggaggcgtttcctataggtttttgga-ttttctttattttcactagtgtatgagtttttcattggag 215  Q
    ||||||||||||| |  | |||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||  ||||||| ||||| |||||| |    
T  21600717 ctatttattgattccagatatagtcctttgttaggagacgtttcctataggtttttggatttttctttattttcacgggtgtatgggttttccattgggg 21600618  T
Q  216 acttcccatcatcctttgtttgttgctaccgtaaga-tttc-tagcctagcactccttgtgttggttaagattcattcctatcttaataaattccatttt 313  Q
     |||||||||||| ||||||||||||||| |||||| | || ||||||| ||||||||||  ||||||||||||||| ||||||||||||||||||||||    
T  21600617 gcttcccatcatcatttgtttgttgctacggtaagactctcatagcctaacactccttgtactggttaagattcattgctatcttaataaattccatttt 21600518  T
Q  314 ag 315  Q
    ||    
T  21600517 ag 21600516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 17 - 170
Target Start/End: Original strand, 1157711 - 1157864
Alignment:
Q  17 tgtggatggtagaagttgtttttgtggcagttgtgatgatgcttgaggattttgtttatgttgtttcgttgatcgtggtgttagctttgttttggtgttt 116  Q
    ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1157711 tgtgggtggtagaagttgtttttgtggcagttgtgacgatgcttgaggattttgtttatgttgtttcgttgatcgtggtgttagctttgttttggtgttt 1157810  T
Q  117 ctatttattgatttcgaagatagccctttgttaggaggcgtttcctataggttt 170  Q
    |||||||||||||||| |||||||| |||||||||||||||||| |||||||||    
T  1157811 ctatttattgatttcggagatagccatttgttaggaggcgtttcttataggttt 1157864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 50 - 250
Target Start/End: Original strand, 41356037 - 41356238
Alignment:
Q  50 tgatgatgcttgaggattttgtttatgttgtttcgttgatcgtggtgttagctttgttttggtgtttctatttattgatttcgaagatagccctttgtta 149  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||| |||||||||    
T  41356037 tgatgatgcttggggattttgtttatgttgtttcgttgatcgtggtgttagctttgttttagtgtttctatttattgattttggagatagtcctttgtta 41356136  T
Q  150 ggaggcgtttcctataggtttttgga-ttttctttattttcactagtgtatgagtttttcattggagacttcccatcatcctttgtttgttgctaccgta 248  Q
    ||||| ||| |||||||||||||||| |||||||||||||||   || |||| ||||| |||||| |  || |  ||||||||||||||||||||| |||    
T  41356137 ggaggtgttacctataggtttttggatttttctttattttcatgggtttatgtgttttccattgggggttttctctcatcctttgtttgttgctactgta 41356236  T
Q  249 ag 250  Q
    ||    
T  41356237 ag 41356238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 100 - 315
Target Start/End: Original strand, 38959174 - 38959387
Alignment:
Q  100 gctttgttttggtgtttctatttattgatttcgaagatagccctttgttaggaggcgtttcctataggtttttgga-ttttctttattttcactagtgta 198  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||  ||| |    
T  38959174 gctttgttttggtgtttctatttattgatt-cggagatagccctttgttaggaggcgtttcctataggtttttcgatttttcttta-tttcacgggtgca 38959271  T
Q  199 tgagtttttcattggagacttcccatcatcctttgtttgttgctaccgtaagatttctagcctagcactccttgtgttggttaagattcattcctatctt 298  Q
    || ||||| || ||| |  ||  |||||| |||||||||||||||| |||||| |  ||||||||||||||||||| | ||||||||||||| |||||||    
T  38959272 tgggttttccaatgg-ggtttttcatcatactttgtttgttgctactgtaagactcttagcctagcactccttgtgctagttaagattcattgctatctt 38959370  T
Q  299 aataaattccattttag 315  Q
    |||||||||||||||||    
T  38959371 aataaattccattttag 38959387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 29 - 321
Target Start/End: Complemental strand, 18696617 - 18696318
Alignment:
Q  29 aagttgtttttgtggcagttgtgatgatgcttgaggattttgtttatgttgtttcgttgatcgtggtgttagctttgttttggtgtttctatttattgat 128  Q
    |||||||| |||||||||||| || |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  18696617 aagttgttattgtggcagttgcgacgatgcttgaggattttgtttatgttgtttctttgatcatggtgttagctttgttttggtgtttctatttattgat 18696518  T
Q  129 ttcgaagatagccc---tttgttaggaggcgtttcctataggtttttggattttctttatt---ttcactagtgtatgagtttttcattggagacttccc 222  Q
    |||| |||||||||   ||| |||||||||||||| ||||| |||||| ||||| ||| ||   || |    | |||||||||| |||| |||  |||||    
T  18696517 ttcggagatagccctcatttattaggaggcgtttcttatagttttttgaattttttttctttgatttatggttatatgagttttccattagaggtttccc 18696418  T
Q  223 atc-atcctttgtttgttgctaccgtaagatttctagcctagcactccttgtgttggttaagattcattcctatcttaataaattccattttaggttttt 321  Q
    ||| ||| ||||  ||||||||  |||| | | |||||||| | ||| |||||  |||||||||||||| | || |||||||||| |||||||| |||||    
T  18696417 atctatcgtttgcatgttgctattgtaaaactcctagcctaactctcgttgtgccggttaagattcattgccattttaataaatttcattttagcttttt 18696318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 69 - 321
Target Start/End: Complemental strand, 7270224 - 7269967
Alignment:
Q  69 tgtttatgttgtttcgttgatcgtggtgttagctttgttttggtgtttctatttattgatttcgaagatagccctttgttaggaggcgtttcctataggt 168  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||  || |||||||||||||||  |||||||||||||||    
T  7270224 tgtttatgttgtttcgttgatcgtgctgttagcttggttttggtgtttctattaattgatttcagagttagccctttgttaggttgcgtttcctataggt 7270125  T
Q  169 --ttttggattttctttatt---ttcactagtgtatgagtttttcattggagacttcccatc-atcctttgtttgttgctaccgtaagatttctagccta 262  Q
      ||||||||||| ||| ||   |||||  |||||||| |||| |||||| |||| || ||| ||||||||| |||||||||  ||||| | ||||||||    
T  7270124 ttttttggatttt-tttcttcgattcacgggtgtatgaattttccattggggactccctatctatcctttgtatgttgctactttaagactcctagccta 7270026  T
Q  263 gcactccttgtgttggttaagattcattcctatcttaataaattccattttaggttttt 321  Q
    ||| |||||||| ||||||||||||||| | || ||||||||||  ||||||| |||||    
T  7270025 gcattccttgtgctggttaagattcattgcgattttaataaattttattttagcttttt 7269967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 17 - 172
Target Start/End: Original strand, 27170601 - 27170768
Alignment:
Q  17 tgtggatggtagaagttgtttttgtggcagttgtgatgatgcttgagga------------ttttgtttatgttgtttcgttgatcgtggtgttagcttt 104  Q
    ||||| |||| |||||| |||||||||||||||||| |||| |||||||            |||||||||||||||||| ||||||||||||||||||||    
T  27170601 tgtgggtggtggaagttatttttgtggcagttgtgacgatgtttgaggattttggtacaacttttgtttatgttgtttcattgatcgtggtgttagcttt 27170700  T
Q  105 gttttggtgtttctatttattgatttcgaagatagccctttgttaggaggcgtttcctataggttttt 172  Q
    |||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||    
T  27170701 gttttggtgtttctatttattggtttcggagatagccatttgttaggaggcgtttcctataggttttt 27170768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 66 - 307
Target Start/End: Original strand, 27170662 - 27170909
Alignment:
Q  66 ttttgtttatgttgtttcgttgatcgtggtgttagctttgttttggtgtttctatttattgatttcgaagatagccctttgttaggaggcgtttcctata 165  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||    
T  27170662 ttttgtttatgttgtttcattgatcgtggtgttagctttgttttggtgtttctatttattggtttcggagatagccatttgttaggaggcgtttcctata 27170761  T
Q  166 ggttttt-ggatttt--cttt-attttcactagt--gtatgagtttttcattggagacttcccatc-atcctttgtttgttgctaccgtaagatttctag 258  Q
    ||||||| |||||||  |||| ||| |     ||  ||||| ||||| |||||  | || |||||| ||||||||| ||||||||   ||||| | ||||    
T  27170762 ggtttttcggattttttctttgattcttgggtgtatgtatgggttttccattgagggctccccatctatcctttgtatgttgctatt-taagactcctag 27170860  T
Q  259 cctagcactccttgtgttggttaagattcattcctatcttaataaattc 307  Q
    |||| ||||||||||| ||||||||||||||| | || |||||||||||    
T  27170861 cctatcactccttgtgctggttaagattcattgcgattttaataaattc 27170909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 69 - 314
Target Start/End: Complemental strand, 26656299 - 26656047
Alignment:
Q  69 tgtttatgttgtttcgttgatcgtggtgttagctttgttttggtgtttctatttattgatttcgaagatagccctttgttaggaggcgtttcctataggt 168  Q
    ||||||||||||||||||||||||| |||||| || ||||||||||||||||| |||||||||| || ||| ||||||||||||||||||||||||||||    
T  26656299 tgtttatgttgtttcgttgatcgtgttgttagtttggttttggtgtttctattaattgatttcggagttagtcctttgttaggaggcgtttcctataggt 26656200  T
Q  169 ttt-tggattttctttatt---ttcactagtgtatgagtttttc---attggagacttcccatc-atcctttgtttgttgctaccgtaagatttctagcc 260  Q
    ||| |||||||| ||| ||   |||||  ||||||||||||| |   ||| | | || |||||| ||||||||| | ||| |||  ||||| | ||||||    
T  26656199 tttatggatttt-tttcttcgattcacgggtgtatgagttttccaatattaggggctccccatctatcctttgtatattgatactttaagactcctagcc 26656101  T
Q  261 tagcactccttgtgttggttaagattcattcctatcttaataaattccatttta 314  Q
    ||||| | |||||| ||||||||||||||| | || ||||||||||||||||||    
T  26656100 tagcattgcttgtgctggttaagattcattgcgattttaataaattccatttta 26656047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 69 - 314
Target Start/End: Complemental strand, 26927886 - 26927634
Alignment:
Q  69 tgtttatgttgtttcgttgatcgtggtgttagctttgttttggtgtttctatttattgatttcgaagatagccctttgttaggaggcgtttcctataggt 168  Q
    ||||||||||||||||||||||||| |||||| || ||||||||||||||||| |||||||||| || ||| ||||||||||||||||||||||||||||    
T  26927886 tgtttatgttgtttcgttgatcgtgttgttagtttggttttggtgtttctattaattgatttcggagttagtcctttgttaggaggcgtttcctataggt 26927787  T
Q  169 ttt-tggattttctttatt---ttcactagtgtatgagtttttc---attggagacttcccatc-atcctttgtttgttgctaccgtaagatttctagcc 260  Q
    ||| |||||||| ||| ||   |||||  ||||||||||||| |   ||| | | || |||||| ||||||||| | ||| |||  ||||| | ||||||    
T  26927786 tttatggatttt-tttcttcgattcacgggtgtatgagttttccaatattaggggctccccatctatcctttgtatattgatactttaagactcctagcc 26927688  T
Q  261 tagcactccttgtgttggttaagattcattcctatcttaataaattccatttta 314  Q
    ||||| | |||||| ||||||||||||||| | || ||||||||||||||||||    
T  26927687 tagcattgcttgtgctggttaagattcattgcgattttaataaattccatttta 26927634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 66 - 172
Target Start/End: Original strand, 7767579 - 7767685
Alignment:
Q  66 ttttgtttatgttgtttcgttgatcgtggtgttagctttgttttggtgtttctatttattgatttcgaagatagccctttgttaggaggcgtttcctata 165  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| | ||||| ||||||||||||||||||||||||||    
T  7767579 ttttgtttatgttgttccgttgatcgtggtgttagctttgttttggtgtttatatttattgattttggagataaccctttgttaggaggcgtttcctata 7767678  T
Q  166 ggttttt 172  Q
    |||||||    
T  7767679 ggttttt 7767685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 69 - 314
Target Start/End: Original strand, 6030877 - 6031126
Alignment:
Q  69 tgtttatgttgtttcgttgatcgtggtgttagctttgttttggtgtttctatttattgatttcgaagatagccctttgttaggaggcgtttcctat-agg 167  Q
    ||||||||||||||||||||||||| |||||| || ||||||||||||||||| |||||||||  |||| |||||||| ||||||||||||||||| ||     
T  6030877 tgtttatgttgtttcgttgatcgtgctgttagattggttttggtgtttctattaattgatttcagagatggccctttgctaggaggcgtttcctataagt 6030976  T
Q  168 tttttggattttctttatt---ttcactagtgtatgagtttttcattggagacttcccatc-atcctttgtttgttgctac-cgtaagatttctagccta 262  Q
    |||||||||||  ||||||   |||||  ||||||| ||||| ||||||   || ||| || ||||||||| |||| ||||   ||||| || |||||||    
T  6030977 tttttggattt--tttatttgattcacgggtgtatgggttttccattgggagctccccgtctatcctttgtatgttactacttttaagacttatagccta 6031074  T
Q  263 gcactccttgtgttggttaagattcattcctatcttaataaattccatttta 314  Q
     ||||| ||||| ||||||||||||||| | || |||||||||| |||||||    
T  6031075 acactctttgtgctggttaagattcatttcgattttaataaatttcatttta 6031126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 66 - 179
Target Start/End: Complemental strand, 1377799 - 1377684
Alignment:
Q  66 ttttgtttatgttgtttcgttgatcgtggtgttagctttgttttggtgtttctatttattgatttcgaagatagccctttgttaggaggcg--tttccta 163  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||  ||||||||||||||||  |||||||    
T  1377799 ttttgattatgttgtttcgttgatcgtggtgttagttttgttttggtgtttctatttattaatttcggagataatcctttgttaggaggcgtttttccta 1377700  T
Q  164 taggtttttggatttt 179  Q
    ||| ||||||||||||    
T  1377699 tagttttttggatttt 1377684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 17 - 108
Target Start/End: Original strand, 38958632 - 38958723
Alignment:
Q  17 tgtggatggtagaagttgtttttgtggcagttgtgatgatgcttgaggattttgtttatgttgtttcgttgatcgtggtgttagctttgttt 108  Q
    ||||| |||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  38958632 tgtgggtggtagaagttgtttttgtgtcagtagtgacgatgcttgaggattttgtttatgttgtttcgttgatcatgttgttagctttgttt 38958723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 203 - 314
Target Start/End: Original strand, 1157868 - 1157980
Alignment:
Q  203 tttttcattggagacttcccatcatcctttgtttgttgctaccgtaagatttctagcctag-cactccttgtgttggttaagattcattcctatcttaat 301  Q
    ||||||||||| | |||||||||||||||| ||||||||||| |||||| | ||||||||| |||| |||||| ||||||||||| ||| ||||||||||    
T  1157868 tttttcattgggggcttcccatcatcctttatttgttgctactgtaagactcctagcctagacactgcttgtgctggttaagatttattgctatcttaat 1157967  T
Q  302 aaattccatttta 314  Q
    |||||||||||||    
T  1157968 aaattccatttta 1157980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 255 - 321
Target Start/End: Original strand, 41356940 - 41357006
Alignment:
Q  255 ctagcctagcactccttgtgttggttaagattcattcctatcttaataaattccattttaggttttt 321  Q
    |||||||||||||||| ||| || ||||||||||||  |||||||||||||| |||||||| |||||    
T  41356940 ctagcctagcactcctcgtgctgattaagattcattgttatcttaataaatttcattttagcttttt 41357006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 7767518 - 7767571
Alignment:
Q  17 tgtggatggtagaagttgtttttgtggcagttgtgatgatgcttgaggattttg 70  Q
    ||||| |||| |||||||||||||||||||||| || |||| ||||||||||||    
T  7767518 tgtgggtggtggaagttgtttttgtggcagttgcgacgatgtttgaggattttg 7767571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 23 - 314
Target Start/End: Original strand, 17282435 - 17282727
Alignment:
Q  23 tggtagaagttgtttttgtggcagttgtgatgatgcttgaggattttgtttatgttgtttcgttgatcgtggtgttagctttgttttggtgtttctattt 122  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  17282435 tggtagaagttgtttttgtggcagttgtgacgatgcttgaggattttgtttatgttgtttcgttgatcgtggtgttagatttattttggtgtttctattt 17282534  T
Q  123 attgatttcgaagatagccctttgttaggaggcgtttcctataggtttttgga-ttttctttattttcactagtgtatgagtttttcattggagacttcc 221  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||| |||||| | |||||    
T  17282535 attgatttcggagatagccctttgttaggaggcgtttcctataggtttttggatttttctttattttcacgggtgtatgagttttacattgggggcttcc 17282634  T
Q  222 catcatcctttgtttgttgctaccgtaagatttctagcctagcactccttgtgttggttaagattcattcctatcttaataaattccatttta 314  Q
    |||||||||||||||||||||||||||||| | |||||||||||||| ||||| ||||||||||| |||  ||||||||||||||||||||||    
T  17282635 catcatcctttgtttgttgctaccgtaagactcctagcctagcactctttgtgctggttaagattaattgttatcttaataaattccatttta 17282727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 23 - 314
Target Start/End: Original strand, 1552084 - 1552375
Alignment:
Q  23 tggtagaagttgtttttgtggcagttgtgatgatgcttgaggattttgtttatgttgtttcgttgatcgtggtgttagctttgttttggtgtttctattt 122  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  1552084 tggtagaagttgtttttgtggcagttgtgacgatgcttgaggattttgtttatgttgttttgttgatcgtggtgttagctatgttttggtgtttctattt 1552183  T
Q  123 attgatttcgaagatagccctttgttaggaggcgtttcctataggtttttgga-ttttctttattttcactagtgtatgagtttttcattggagacttcc 221  Q
    |||||||||| ||||||||||||||||||||||||||| ||||| |||||| | |||||||||||||||   ||||||| | ||||||||||   |||||    
T  1552184 attgatttcggagatagccctttgttaggaggcgtttcttatagatttttgaatttttctttattttcatgggtgtatg-ggttttcattgggagcttcc 1552282  T
Q  222 catcatcctttgtttgttgctaccgtaagatttctagcctagcactccttgtgttggttaagattcattcctatcttaataaattccatttta 314  Q
    || |||||||||||||||||||| |||||| |  ||||||||||||||||||| | ||||||||||||| |||||||||||||||| ||||||    
T  1552283 caccatcctttgtttgttgctactgtaagactcttagcctagcactccttgtgctcgttaagattcattgctatcttaataaattctatttta 1552375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 17 - 307
Target Start/End: Complemental strand, 3921225 - 3920935
Alignment:
Q  17 tgtggatggtagaagttgtttttgtggcagttgtgatgatgcttgaggattttgtttatgttgtttcgttgatcgtggtgttagctttgttttggtgttt 116  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  3921225 tgtgggtggtagaagttgtttttgtggcagttgtgacgatgcttgaggattttgtttatgttgtttcgttgatcgtggtgttagctatgttttgatgttt 3921126  T
Q  117 ctatttattgatttcgaagatagccctttgttaggaggcgtttcctataggtttttgga-ttttctttattttcactagtgtatgagtttttcattggag 215  Q
    |||||||||||||||| ||||||||||||||||||||||||||  ||||| |||||| | ||||||||||||||||  ||||||| | |||||||||| |    
T  3921125 ctatttattgatttcggagatagccctttgttaggaggcgtttattatagatttttgaatttttctttattttcacaggtgtatg-ggttttcattgggg 3921027  T
Q  216 acttcccatcatcctttgtttgttgctaccgtaagatttctagcctagcactccttgtgttggttaagattcattcctatcttaataaattc 307  Q
      || |||||||| ||||||||||||||| |||||| | ||| | |||||||||||||| |||||| || ||||| ||||||||||||||||    
T  3921026 gttttccatcatcatttgtttgttgctactgtaagactcctaacttagcactccttgtgctggttatgactcattgctatcttaataaattc 3920935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 17 - 321
Target Start/End: Complemental strand, 1895036 - 1894738
Alignment:
Q  17 tgtggatggtagaagttgtttttgtggcagttgtgatgatgcttgaggattttgttt-atgttgtttcgttgatcgtggtgttagctttgttttggtgtt 115  Q
    ||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||| ||||    
T  1895036 tgtgggtggtagaagttgtttttgtggcagttgtgacgatgcttgaggatttttttttatgttgtttcgttgaacgtggtgttagctttgttttgatgtt 1894937  T
Q  116 tctatttattgatttcgaagatagccctttgttaggaggcgtttcctataggtttttgga-ttttctttattttcactagtgtatgagtttttcattgga 214  Q
    ||||||||||||||||||||||||| |||||||||||| ||||| ||||| ||||||||| ||||||||||||||||  |||||||  || | ||         
T  1894936 tctatttattgatttcgaagatagctctttgttaggagacgttttctataagtttttggatttttctttattttcacgggtgtatggattctcca----- 1894842  T
Q  215 gacttcccatcatcctttgtttgttgctaccgtaagatttctagcctagcactccttgtgttggttaagattcattcctatcttaataaattccatttta 314  Q
       |||||||||||||||||||||||||||||||||| | |||||||| ||||||||||| ||||||| ||||||| |||||||||||||||| ||||||    
T  1894841 ---ttcccatcatcctttgtttgttgctaccgtaagactcctagcctaacactccttgtgctggttaaaattcattgctatcttaataaattctatttta 1894745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 66 - 321
Target Start/End: Complemental strand, 17374885 - 17374628
Alignment:
Q  66 ttttgtttatgttgtttcgttgatcgtggtgttagctttgttttggtgtttctatttattgatttcgaagatagccctttgttaggaggcgtttcctata 165  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||| | |||||||||||||||||||    
T  17374885 ttttgtttatgttgtttcgttgatcgtggtgttagctttgttttgatttttctatttattgatttcggagatagccctctcttaggaggcgtttcctata 17374786  T
Q  166 ggttttt-ggattttctttatt-ttcactagtgtatgagtttttcattggagacttcccatc-atcctttgtttgttgctaccgtaagatttctagccta 262  Q
    ||||||| ||||||| | | |  |||||  |||||||||||||||||| | | || |||||| ||||||||| | ||||| |  ||||| | ||||| ||    
T  17374785 ggttttttggattttttctttgattcacgggtgtatgagtttttcattaggggctccccatctatcctttgtatattgct-ctttaagactcctagctta 17374687  T
Q  263 gcactccttgtgttggttaagattcattcctatcttaataaattccattttaggttttt 321  Q
     ||||||||||| |||||||||||||||   || |||||||||| |||||||| |||||    
T  17374686 acactccttgtgctggttaagattcattgtgattttaataaatttcattttagtttttt 17374628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 66 - 321
Target Start/End: Original strand, 11163591 - 11163843
Alignment:
Q  66 ttttgtttatgttgtttcgttgatcgtggtgttagctttgttttggtgtttctatttattgatttcgaagatagccctttgttaggaggcgtttcctata 165  Q
    ||||||||||||||| ||||||||   |||||||||||||||||||| ||||||||||||||||| | | ||||||||||||||||||| |||| |||||    
T  11163591 ttttgtttatgttgtgtcgttgat---ggtgttagctttgttttggtatttctatttattgattttggatatagccctttgttaggaggtgttttctata 11163687  T
Q  166 ggtttttggattttctttattttcactagtgtatgagtttttcattggagacttcccatc-atcctttgtttgttgctaccgtaagatttctagcctagc 264  Q
     ||||||   |||| ||| | |||||  |||||||||||||||||||||  |||| |||| ||||||| | |||| ||||  ||||| | ||| ||||||    
T  11163688 agttttttttttttttttttattcacgggtgtatgagtttttcattgga-tcttctcatctatcctttatatgttactactttaagactcctaacctagc 11163786  T
Q  265 actccttgtgttggttaagattcattcctatcttaataaattccattttaggttttt 321  Q
    ||||| |||  ||||||||||||||  | || ||||||||||||||||||| |||||    
T  11163787 actccctgtactggttaagattcatcgcgatgttaataaattccattttagtttttt 11163843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 69 - 321
Target Start/End: Complemental strand, 4869198 - 4868942
Alignment:
Q  69 tgtttatgttgtttcgttgatcgtggtgttagctttgttttggtgtttctatttattgatttcgaagatagccctttgttaggaggcgtttcctataggt 168  Q
    |||||||||||||||||||||||   ||||||||| ||||||||||||||||| |||||||||  |||| |||||||| |||||||||||||||||||||    
T  4869198 tgtttatgttgtttcgttgatcgccctgttagcttggttttggtgtttctattaattgatttcagagatggccctttgctaggaggcgtttcctataggt 4869099  T
Q  169 --ttttgga--ttttctttattttcactagtgtatgagtttttcattggagacttcccatc-atcctttgtttgttgctaccgtaagatttctagcctag 263  Q
      |||||||  ||||||||   |||||  ||||| |  ||||  ||||| | || ||| || ||||||||| |||||||||  ||||| | |||||||||    
T  4869098 ttttttggaatttttcttt-gattcacaggtgtaaggattttcaattgggggctccccgtctatcctttgtatgttgctactttaagactcctagcctag 4869000  T
Q  264 cactccttgtgttggttaagattcattcctatcttaataaattccattttaggttttt 321  Q
    ||||||||||| || |||||||||||| | || |||||||||| |||||||| |||||    
T  4868999 cactccttgtgctgattaagattcatttcgattttaataaatttcattttagtttttt 4868942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 321
Target Start/End: Complemental strand, 34659677 - 34659579
Alignment:
Q  226 atcctttgtttgttgctaccgtaagatttctagcctagca---ctccttgtgttggttaagattcattcctatcttaataaattccattttaggttttt 321  Q
    ||||||||| |||||||||  ||||| | ||| |||||||   ||||| ||| ||||||||||||||| | || |||||||||| |||||||| |||||    
T  34659677 atcctttgtatgttgctactttaagactcctaacctagcagcactcctcgtgctggttaagattcattgcgattttaataaatttcattttagcttttt 34659579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 255 - 314
Target Start/End: Complemental strand, 30799327 - 30799268
Alignment:
Q  255 ctagcctagcactccttgtgttggttaagattcattcctatcttaataaattccatttta 314  Q
    |||||||| |||| |||||| ||||||||||||||| | || |||||||||| |||||||    
T  30799327 ctagcctaacacttcttgtgctggttaagattcattgcgattttaataaatttcatttta 30799268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 69 - 103
Target Start/End: Complemental strand, 34659820 - 34659786
Alignment:
Q  69 tgtttatgttgtttcgttgatcgtggtgttagctt 103  Q
    ||||||||||||||||||||||||| |||||||||    
T  34659820 tgtttatgttgtttcgttgatcgtgttgttagctt 34659786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 124 - 172
Target Start/End: Complemental strand, 34659787 - 34659739
Alignment:
Q  124 ttgatttcgaagatagccctttgttaggaggcgtttcctataggttttt 172  Q
    ||||||||  || ||| ||||||||||||||||||||||||| ||||||    
T  34659787 ttgatttcagagttagtcctttgttaggaggcgtttcctatatgttttt 34659739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 170; Significance: 5e-91; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 23 - 315
Target Start/End: Complemental strand, 53201877 - 53201585
Alignment:
Q  23 tggtagaagttgtttttgtggcagttgtgatgatgcttgaggattttgtttatgttgtttcgttgatcgtggtgttagctttgttttggtgtttctattt 122  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  53201877 tggtagaagttgtttttgtggcagttgtgacgatgcttgaggattttgtttatgttgttttgttgatcgtgatgttagctttgttttggtgtttctattt 53201778  T
Q  123 attgatttcgaagatagccctttgttaggaggcgtttcctataggtttttgga-ttttctttattttcactagtgtatgagtttttcattggagacttcc 221  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||  |||||||  |||| |||||| |  || |    
T  53201777 attgatttcggagatagccctttgttaggaggtgtttcctataggtttttggatttttatttattttcacgggtgtatggattttccattgg-gggtttc 53201679  T
Q  222 catcatcctttgtttgttgctaccgtaagatttctagcctagcactccttgtgttggttaagattcattcctatcttaataaattccattttag 315  Q
    ||||||||||||||| ||| ||| |||||| | |||||||| || ||||||||  |||||||||| ||| |||| |||| ||||||||||||||    
T  53201678 catcatcctttgtttattgttactgtaagactcctagcctaacattccttgtgccggttaagattaattgctatattaacaaattccattttag 53201585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 17 - 315
Target Start/End: Original strand, 47518942 - 47519238
Alignment:
Q  17 tgtggatggtagaagttgtttttgtggcagttgtgatgatgcttgaggattttgtttatgttgtttcgttgatcgtggtgttagctttgttttggtgttt 116  Q
    ||||| |||||||||||||||||||||||||||||  ||||||||||| |||||| ||||||   ||||||||| |||||||||||||||||||||||||    
T  47518942 tgtgggtggtagaagttgtttttgtggcagttgtggcgatgcttgaggtttttgtatatgtt---tcgttgatcctggtgttagctttgttttggtgttt 47519038  T
Q  117 ctatttattgatttcgaagatagccctttgttaggaggcgtttcctataggtttttgga-ttttctttattttcactagtgtatgagtttttcattggag 215  Q
    | |||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||| ||||||||||| ||    ||||||| ||||| |||||| |    
T  47519039 cgatttattgatttcggagatagccctttgttaggaggcatttccaataggtttttggatttttctttattctcgtgggtgtatgggttttccattgggg 47519138  T
Q  216 acttcccatcatcctttgtttgttgctaccgtaagatttctagcctagcactccttgtgttggttaagattcattcctatcttaataaattccattttag 315  Q
     |||||||||||||||||||||||||||  |||||| |  || |||| ||||||||||| ||||||||||| |||  |||||||||||||||||||||||    
T  47519139 gcttcccatcatcctttgtttgttgctagtgtaagactcttaacctaacactccttgtgctggttaagatttattgttatcttaataaattccattttag 47519238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 17 - 321
Target Start/End: Original strand, 31360553 - 31360858
Alignment:
Q  17 tgtggatggtagaagttgtttttgtggcagttgtgatgatgcttgaggattttgtttatgttgtttcgttgatcgtggtgttagctttgttttggtgttt 116  Q
    ||||| ||||||||||||||||||||| | |||||| |||| |||| ||||||||||||||||| |||||||||||| |||||| |||||||| ||||||    
T  31360553 tgtgggtggtagaagttgtttttgtggtaattgtgacgatgtttgaagattttgtttatgttgtgtcgttgatcgtgatgttagttttgttttagtgttt 31360652  T
Q  117 ctatttattgatttcgaagatagccctttgttaggaggcgtttcctataggtttttgga-ttttctttattttcactagtgtatgagtttttcattggag 215  Q
    |||||||||||||| | | |||||  ||||||||||| |||||  |||||||||||||| |||||| |||||||||  ||||||| |||||||||||| |    
T  31360653 ctatttattgattttggaaatagcattttgttaggagacgttttttataggtttttggatttttctatattttcacgggtgtatgggtttttcattgggg 31360752  T
Q  216 acttcccatcatcctttgtttgttgctaccgtaagatttctagcctagcactccttgtgttggttaagattcattcctatcttaataaattccattttag 315  Q
     |||||||||||| ||||| |||||||||  ||||| |||| ||||| ||||||||||| ||| ||||||||| |  |||||||||||||| ||||||||    
T  31360753 gcttcccatcatcatttgtgtgttgctactataagacttctggcctaacactccttgtgctggctaagattcagtgttatcttaataaatttcattttag 31360852  T
Q  316 gttttt 321  Q
     |||||    
T  31360853 cttttt 31360858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 17 - 200
Target Start/End: Original strand, 34227484 - 34227668
Alignment:
Q  17 tgtggatggtagaagttgtttttgtggcagttgtgatgatgcttgaggattttgtttatgttgtttcgttgatcgtggtgttagctttgttttggtgttt 116  Q
    ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34227484 tgtgggtggtagaagttgtttttgtggcagttgtgacgatgcttgaggattttgtttatgttgtttcgttgatcgtggtgttagctttgttttggtgttt 34227583  T
Q  117 ctatttattgatttcgaagatagccctttgttaggaggcgtttcctataggtttttgga-ttttctttattttcactagtgtatg 200  Q
    |||||||||||||||| |||||||||||||||| |||| | |||||||||||||||||| ||||||||||||||||  |||||||    
T  34227584 ctatttattgatttcggagatagccctttgttaagaggtgattcctataggtttttggatttttctttattttcacgggtgtatg 34227668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 66 - 321
Target Start/End: Original strand, 14566531 - 14566797
Alignment:
Q  66 ttttgtttatgttgtttcgttgatcgtggtgttagctttgttttggtgtttctatttattgatttcgaagatagccctttgttaggaggcgtttcctata 165  Q
    |||||||||||||||||||||||||||||||||||||||| | | ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  14566531 ttttgtttatgttgtttcgttgatcgtggtgttagctttggtcttgtgtttctatttactgatttcggagatagccctttgttaggaggcgtttcctata 14566630  T
Q  166 -ggtttttggattttctttatt---ttcactagtgtatgagtttttcattggagacttcccatc-atcctttgtttgttgctaccgtaagatttctagcc 260  Q
     |||||||||||||| ||| ||   |||||  ||||||||| ||| |||||| | || |||||| ||| ||||| ||||||||   ||||| | ||| ||    
T  14566631 gggtttttggattttttttctttgattcacgggtgtatgaggtttccattgggggctccccatctatcatttgtatgttgctattttaagactcctaacc 14566730  T
Q  261 tagcactc------cttgtgttggttaagattcattcctatcttaataaattccattttaggttttt 321  Q
    ||||||||      |||||| ||||||||||||||| | || |||||| |||| ||||||| |||||    
T  14566731 tagcactccttgtgcttgtgctggttaagattcattgcgattttaatacattctattttagcttttt 14566797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 66 - 286
Target Start/End: Original strand, 23054823 - 23055046
Alignment:
Q  66 ttttgtttatgttgtttcgttgatcgtggtgttagctttgttttggtgtttctatttattgatttcgaagatagccctttgttaggaggcgtttcctata 165  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||| | |||||  |||||||||||||| |||| |||||    
T  23054823 ttttgtttatgttgtttcgttgatcgtggtgttagctttgttttagtgtttctatttatagtttttggagataatcctttgttaggaggtgttttctata 23054922  T
Q  166 ggtttt-tggattttctttattt---tcactagtgtatgagtttttcattggagacttcccatc-atcctttgtttgttgctaccgtaagatttctagcc 260  Q
    |||||| |||||||  ||| |||   ||||  |||||||  ||||||||| | | |||| |||| ||||||||| |||| |||   ||||| |  |||||    
T  23054923 ggttttatggattt--tttctttgaatcacgggtgtatggatttttcattagcggcttctcatctatcctttgtatgttactattttaagactcttagcc 23055020  T
Q  261 tagcactccttgtgttggttaagatt 286  Q
    || ||||||||||| |||||||||||    
T  23055021 taacactccttgtgctggttaagatt 23055046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 6409641 - 6409594
Alignment:
Q  23 tggtagaagttgtttttgtggcagttgtgatgatgcttgaggattttg 70  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||    
T  6409641 tggtggaagttgtttttgtggcagttgtgatgatgtttgaggattttg 6409594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 226 - 313
Target Start/End: Original strand, 24958268 - 24958355
Alignment:
Q  226 atcctttgtttgttgctaccgtaagatttctagcctagcactccttgtgttggttaagattcattcctatcttaataaattccatttt 313  Q
    ||||||||| |||||||||  ||||| | ||||||||||| |||||||| |||| | |||||||| | || |||||||||||||||||    
T  24958268 atcctttgtatgttgctactttaagactcctagcctagcattccttgtgctggtcaggattcattgcaattttaataaattccatttt 24958355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 85 - 150
Target Start/End: Complemental strand, 6409554 - 6409488
Alignment:
Q  85 ttgatcgtggtgttagctttgtttt-ggtgtttctatttattgatttcgaagatagccctttgttag 150  Q
    ||||| ||||||||||||||||||| |||||||   |||||| ||||||||||||||||||||||||    
T  6409554 ttgattgtggtgttagctttgtttttggtgttttcttttatttatttcgaagatagccctttgttag 6409488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 92 - 151
Target Start/End: Complemental strand, 54230255 - 54230195
Alignment:
Q  92 tggtgttagctttgtttt-ggtgtttctatttattgatttcgaagatagccctttgttagg 151  Q
    |||||||||||||||||| ||||||||  ||||||||||| ||| ||||||||||||||||    
T  54230255 tggtgttagctttgtttttggtgtttccttttattgatttagaatatagccctttgttagg 54230195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 85 - 171
Target Start/End: Original strand, 24958162 - 24958248
Alignment:
Q  85 ttgatcgtggtgttagctttgtttt-ggtgtttctatttattgatttcgaagatagccctttgttaggaggcgtttcctataggtttt 171  Q
    ||||| ||||||||||||||||||| ||||||||  ||||||||||| | ||||||| |||||||||| || |||| |||||| ||||    
T  24958162 ttgattgtggtgttagctttgtttttggtgtttcc-tttattgattttggagatagctctttgttaggtggtgttttctatagatttt 24958248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 321
Target Start/End: Original strand, 34227681 - 34227772
Alignment:
Q  230 tttgtttgttgctaccgtaagatttctagcctagcactccttgtgttggttaagattcattcctatcttaataaattccattttaggttttt 321  Q
    |||||||||||||||  ||||| |  ||||||| ||| | ||||| ||||||||||||||| | |  ||||||| ||||||||||| |||||    
T  34227681 tttgtttgttgctactttaagactcttagcctaacacgctttgtgctggttaagattcattgcgagattaataagttccattttagtttttt 34227772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 158; Significance: 8e-84; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 17 - 321
Target Start/End: Original strand, 11698834 - 11699138
Alignment:
Q  17 tgtggatggtagaagttgtttttgtggcagttgtgatgatgcttgaggattttgtttatgttgtttcgttgatcgtggtgttagctttgttttggtgttt 116  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||| |||||| || ||||||||||||||    
T  11698834 tgtgggtggtagaagttgtttttgtggcagttgtgacgatgcttgatgattttgtttatgttgtttcgttgctcgaggtgttcgcattgttttggtgttt 11698933  T
Q  117 ctatttattgatttcgaagatagccctttgttaggaggcgtttcctataggtttttgga-ttttctttattttcactagtgtatgagtttttcattggag 215  Q
    |||||||||||||||| |||| ||||||||||||||||  |||||||| |||||||||| ||||||||||||||||  ||||||| |||||  ||| | |    
T  11698934 ctatttattgatttcggagatggccctttgttaggaggtatttcctatcggtttttggatttttctttattttcacgggtgtatgggttttctatttggg 11699033  T
Q  216 acttcccatcatcctttgtttgttgctaccgtaagatttctagcctagcactccttgtgttggttaagattcattcctatcttaataaattccattttag 315  Q
     ||| | ||||||||||||||||||||||  ||||| |  || ||||||||||||||||  ||||||||||||||  |||||| ||||||||||||||||    
T  11699034 gctt-ctatcatcctttgtttgttgctactataagactcttaacctagcactccttgtggcggttaagattcattgttatcttcataaattccattttag 11699132  T
Q  316 gttttt 321  Q
     |||||    
T  11699133 tttttt 11699138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 67 - 165
Target Start/End: Complemental strand, 29550166 - 29550068
Alignment:
Q  67 tttgtttatgttgtttcgttgatcgtggtgttagctttgttttggtgtttctatttattgatttcgaagatagccctttgttaggaggcgtttcctata 165  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||    
T  29550166 tttgtttatgttgtttcgttgatcgtggtgttagctttattttggtgtttctatttattgatttcggagatagccctttgttatgaggcgttttctata 29550068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 69 - 314
Target Start/End: Complemental strand, 3301996 - 3301744
Alignment:
Q  69 tgtttatgttgtttcgttgatcgtggtgttagctttgttttggtgtttctatttattgatttcgaagatagccctttg-ttaggaggcgtttcctatagg 167  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||| |||| |||||||||||||||| || |    
T  3301996 tgtttatgttgtttcgttgatcgtggtgttagctttgttttggtgtttctatttattgattttagagatagccatttgtttaggaggcgtttcctctaag 3301897  T
Q  168 ttttt-ggattttctttatt---ttcactagtgtatgagtttttcatt-ggagacttcccatc-atcctttgtttgttgctaccgtaagatttctagcct 261  Q
    ||||| ||||||| ||| ||   |||||  ||||||| ||||| |||| |||| || |||||| ||| ||| | |||||||||  ||||| ||||| | |    
T  3301896 tttttaggattttttttctttgattcacaggtgtatgggttttccattaggag-ctccccatctatcatttatatgttgctactttaagacttctacctt 3301798  T
Q  262 agcactccttgtgttggtt-aagattcattcctatcttaataaattccatttta 314  Q
    |  |||||||||| ||||| |||||||||| | || |||||||||| |||||||    
T  3301797 aatactccttgtgctggttaaagattcattgcgattttaataaatttcatttta 3301744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 66 - 167
Target Start/End: Complemental strand, 1778151 - 1778049
Alignment:
Q  66 ttttgtttatgttgtttcgttgatcgtggtgttagctttg-ttttggtgtttctatttattgatttcgaagatagccctttgttaggaggcgtttcctat 164  Q
    ||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||  ||||| | ||||| || ||||| ||||||||    
T  1778151 ttttgtttatgttgtttcgttgatcgtggtgataactttgtttttggtgtttctatttattgatttcagagataactctttgatacgaggcatttcctat 1778052  T
Q  165 agg 167  Q
    |||    
T  1778051 agg 1778049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 66 - 172
Target Start/End: Original strand, 39020736 - 39020855
Alignment:
Q  66 ttttgtttatgttgtttcgttgatcgtggtgttagctttgt-------------tttggtgtttctatttattgatttcgaagatagccctttgttagga 152  Q
    |||||||||||||||||||||||| ||||||||||||||||             |||||||||||||||||||||||||| | |||| | ||||||||||    
T  39020736 ttttgtttatgttgtttcgttgattgtggtgttagctttgttttggtggattgttttggtgtttctatttattgatttcggatatagtcatttgttagga 39020835  T
Q  153 ggcgtttcctataggttttt 172  Q
    ||||||||| ||||||||||    
T  39020836 ggcgtttcccataggttttt 39020855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 1778206 - 1778159
Alignment:
Q  23 tggtagaagttgtttttgtggcagttgtgatgatgcttgaggattttg 70  Q
    |||| |||||||||||||||||||||||||  ||| ||||||||||||    
T  1778206 tggtggaagttgtttttgtggcagttgtgacaatgtttgaggattttg 1778159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 3302060 - 3302007
Alignment:
Q  17 tgtggatggtagaagttgtttttgtggcagttgtgatgatgcttgaggattttg 70  Q
    ||||| |||| |||||| ||||||||||||||||||  ||| ||||||||||||    
T  3302060 tgtgggtggtggaagttatttttgtggcagttgtgaccatgtttgaggattttg 3302007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 256 - 320
Target Start/End: Complemental strand, 1777956 - 1777892
Alignment:
Q  256 tagcctagcactccttgtgttggttaagattcattcctatcttaataaattccattttaggtttt 320  Q
    |||| ||||||||||| || |||||||||||||||   || |||| |||||||||||||| ||||    
T  1777956 tagcttagcactccttatgctggttaagattcatttgaattttaagaaattccattttagctttt 1777892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 158; Significance: 8e-84; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 17 - 321
Target Start/End: Complemental strand, 25791255 - 25790951
Alignment:
Q  17 tgtggatggtagaagttgtttttgtggcagttgtgatgatgcttgaggattttgtttatgttgtttcgttgatcgtggtgttagctttgttttggtgttt 116  Q
    ||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  25791255 tgtgggtggtagaagttgtttttgtgacagttgtgacgatgcttgaggattttgtttatgttgtttcattgatcgtggtgttagctttgttttgatgttt 25791156  T
Q  117 ctatttattgatttcgaagatagccctttgttaggaggcgtttcctataggtttttgga-ttttctttattttcactagtgtatgagtttttcattggag 215  Q
    |||||||||||||||| |||||||||| ||||||||| | | ||||||||||||||||| ||||||||||||||||  ||||||| ||||| |||||  |    
T  25791155 ctatttattgatttcggagatagccctatgttaggagacatatcctataggtttttggatttttctttattttcacgggtgtatgggttttccattgagg 25791056  T
Q  216 acttcccatcatcctttgtttgttgctaccgtaagatttctagcctagcactccttgtgttggttaagattcattcctatcttaataaattccattttag 315  Q
      || |||||||| |||||||||||| | | ||||| | ||| ||| |||||||||||| ||||||||| | |||  |||||||||||||| ||||||||    
T  25791055 gttttccatcatcatttgtttgttgc-aacttaagactcctaacctggcactccttgtgctggttaagaattattgttatcttaataaatttcattttag 25790957  T
Q  316 gttttt 321  Q
     |||||    
T  25790956 cttttt 25790951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 69 - 314
Target Start/End: Complemental strand, 615310 - 615060
Alignment:
Q  69 tgtttatgttgtttcgttgatcgtggtgttagctttgttttggtgtttctatttattgatttcgaagatagccctttgttaggaggcgtttcctatag-- 166  Q
    |||||||||||||| |||||||||| ||||||||| ||||||||||||||||| |||||||||  | ||| ||||||| |||||||| ||||||||||      
T  615310 tgtttatgttgttttgttgatcgtgctgttagcttggttttggtgtttctattaattgatttcagatataaccctttgctaggaggcatttcctatagtt 615211  T
Q  167 -gtttttggattttct-ttattttcactagtgtatgagtttttcattggagacttcccatc-atcctttgtttgttgctaccgtaagatttctagcctag 263  Q
      |||||||||||| | ||   |||||  |||||||  |||| |||||| | || |||||| ||||||||| |||||||||  ||||| | ||||| |||    
T  615210 tttttttggattttttctttgattcacgggtgtatggattttccattgggggctccccatctatcctttgtatgttgctactttaagactcctagcatag 615111  T
Q  264 cactccttgtgttggttaagattcattcctatcttaataaattccatttta 314  Q
    |||| |||||| | ||||||||||||| | || ||||||||||||||||||    
T  615110 cacttcttgtgctagttaagattcatttcgattttaataaattccatttta 615060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 17 - 117
Target Start/End: Complemental strand, 34117677 - 34117577
Alignment:
Q  17 tgtggatggtagaagttgtttttgtggcagttgtgatgatgcttgaggattttgtttatgttgtttcgttgatcgtggtgttagctttgttttggtgttt 116  Q
    ||||| |||| ||||||||||||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34117677 tgtgggtggtggaagttgtttttgtggcagttgcaacgatgcttgaggattttgtttatgttgtttcgttgatcgtggtgttagctttgttttggtgttt 34117578  T
Q  117 c 117  Q
    |    
T  34117577 c 34117577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 100 - 314
Target Start/End: Complemental strand, 34653429 - 34653210
Alignment:
Q  100 gctttgttttggtgtttctatttattgatttcgaagatagccctttgttaggaggcgtttcctatag-gtttttggattttctttatt---ttcactagt 195  Q
    |||||||||||||||||| | | |||||||||| | ||| ||||||||||||||| |||||||||||  |||||||||||| ||| ||   |||||  ||    
T  34653429 gctttgttttggtgtttccactcattgatttcggatataaccctttgttaggaggtgtttcctatagtttttttggattttttttctttgattcacgggt 34653330  T
Q  196 gtatgagtttttcattggagacttcccatc-atcctttgtttgttgctaccgtaagatttctagcctagcactccttgtgttggttaagattcattccta 294  Q
    |||||||||||||||||  |||| | |||| |||||||||||||| |||   ||||| ||| ||| |||||||||||||  | ||||||||||||| | |    
T  34653329 gtatgagtttttcattgaggactcctcatctatcctttgtttgttactattttaagacttcaagcgtagcactccttgtactcgttaagattcattgcga 34653230  T
Q  295 tcttaataaattccatttta 314  Q
    | ||||||||||||||||||    
T  34653229 ttttaataaattccatttta 34653210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 66 - 290
Target Start/End: Original strand, 39709551 - 39709781
Alignment:
Q  66 ttttgtttatgttgtttcgttgatcgtggtgttagctttgttttggtgtttctatttattgatttcgaagatagccctttgttaggaggcgtttcctata 165  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||   || | ||||||||||||| ||||||| | ||    
T  39709551 ttttgtttttgttgtttcgttgatcgtggtgttagctttgttttggtgtttctatttattggtttcagggacaaccctttgttaggaagcgtttctttta 39709650  T
Q  166 gg-tttttggattttctttatt---ttcactagtgtatgagtttttcattggagacttc-ccatc-atcctttgtttgttgctaccgtaagatttctagc 259  Q
    || |||||||||||| ||| ||   |||||  || |||||||||| |||| | | || | ||||| ||| ||||| |||||||||  ||||| | | |||    
T  39709651 ggttttttggattttttttctttgattcacgggtatatgagttttccatttggggctcctccatctatcttttgtatgttgctactttaagactccaagc 39709750  T
Q  260 ctagcactccttgtgttggttaagattcatt 290  Q
    ||||||||||||| ||  |||||||||||||    
T  39709751 ctagcactccttgcgtcagttaagattcatt 39709781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 85 - 315
Target Start/End: Original strand, 11408355 - 11408589
Alignment:
Q  85 ttgatcgtggtgttagctttgtttt-ggtgtttctatttattgatttcgaagatagccctttgttaggaggcgtttcctataggttttt-ggattttctt 182  Q
    ||||| ||||||||||||||||||| ||||||||  ||||||||||||| ||||||| |||||||||| || |||| |||||  ||||| ||||||| |     
T  11408355 ttgattgtggtgttagctttgtttttggtgtttccttttattgatttcggagatagctctttgttaggtggtgttttctataaattttttggattttgtc 11408454  T
Q  183 tatttt-cactagtgtatgagtttttcattggagacttcccatc-atcctttgtttgttgctaccgtaagatttctagcctagcactccttgtgttggtt 280  Q
    | |  | |||  |||||||||||||||||||| | || ||| || ||||||||| |||| ||||  ||||| |  || |||||||||||||||| |||||    
T  11408455 tttgatgcacgggtgtatgagtttttcattgggggctccccgtctatcctttgtatgttactactttaagactcataacctagcactccttgtgctggtt 11408554  T
Q  281 aagattcattcctatcttaataaattccattttag 315  Q
    | |||||||| | || |||||||||||||||||||    
T  11408555 atgattcattgcaattttaataaattccattttag 11408589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 134 - 321
Target Start/End: Original strand, 27340198 - 27340389
Alignment:
Q  134 agatagccctttgttaggaggcgtttcctataggttttt-ggattttctttatt--ttcactagtgtatgagtttttcattggagacttcccatc-atcc 229  Q
    ||||||| |||| |||| || |||||  ||||||||||| ||||||||||  ||  | ||| |||||||||||||| ||||| || ||||||||| ||||    
T  27340198 agatagctcttttttagaagacgttttttataggttttttggattttcttatttgatgcacgagtgtatgagttttccattgaaggcttcccatctatcc 27340297  T
Q  230 tttgtttgttgctaccgtaagatttctagcctagcactccttgtgttggttaagattcattcctatcttaataaattccattttaggttttt 321  Q
    ||| | |||||||||  ||||| |  ||| ||||||||| |||||  ||||| |||||||| | || |||||||||| |||||||| |||||    
T  27340298 tttttatgttgctactttaagactcgtagtctagcactctttgtgccggttaggattcattgccattttaataaatttcattttagtttttt 27340389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 66 - 111
Target Start/End: Complemental strand, 34654508 - 34654463
Alignment:
Q  66 ttttgtttatgttgtttcgttgatcgtggtgttagctttgttttgg 111  Q
    |||||||||||||||||||||||||||| |||||||||||||||||    
T  34654508 ttttgtttatgttgtttcgttgatcgtgatgttagctttgttttgg 34654463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 94 - 314
Target Start/End: Original strand, 6504324 - 6504548
Alignment:
Q  94 gtgttagctttgtttt-ggtgtttctatttattgatttcgaagatagccctttgttaggaggcgtttcctat-aggtttttggattttct-ttattttca 190  Q
    |||||||||||||||| |||||||   ||||||||||||||||||| ||||||||||||| | ||||| ||| || |||||||||||| | ||   | ||    
T  6504324 gtgttagctttgtttttggtgttttcttttattgatttcgaagataaccctttgttaggatgtgtttcttataagttttttggattttgtctttgatgca 6504423  T
Q  191 ctagtgtatgagtttttcattggagacttcccatc-atcctttgtttgttgctaccgtaagatttctagcctagcactccttgtgttggttaagattcat 289  Q
    |   |||||| ||||| |||||| | || |||||| ||||||| | |||||||||  ||||| |  ||||||| ||||||||||| | ||||  ||||||    
T  6504424 cggatgtatgggttttccattgggggctccccatctatcctttatatgttgctacattaagactcatagcctaacactccttgtgctagttagaattcat 6504523  T
Q  290 tcctatcttaataaattccatttta 314  Q
    |   || ||||||||||| ||||||    
T  6504524 tgtgattttaataaattctatttta 6504548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 217 - 321
Target Start/End: Complemental strand, 34117517 - 34117412
Alignment:
Q  217 cttcccatc-atcctttgtttgttgctaccgtaagatttctagcctagcactccttgtgttggttaagattcattcctatcttaataaattccattttag 315  Q
    ||||||||| ||||||||| ||||||||  |||||| |  |||| |||||||||||||| ||||||||||| |||    | |||||||||| ||||||||    
T  34117517 cttcccatctatcctttgtatgttgctattgtaagactcttagcttagcactccttgtgctggttaagattaattgtggttttaataaatttcattttag 34117418  T
Q  316 gttttt 321  Q
     |||||    
T  34117417 cttttt 34117412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 34654569 - 34654516
Alignment:
Q  17 tgtggatggtagaagttgtttttgtggcagttgtgatgatgcttgaggattttg 70  Q
    ||||| |||| ||||||||||||||| |||||| || |||| ||||||||||||    
T  34654569 tgtgggtggtggaagttgtttttgtgacagttgcgacgatgtttgaggattttg 34654516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 138; Significance: 7e-72; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 47 - 295
Target Start/End: Complemental strand, 20740196 - 20739948
Alignment:
Q  47 ttgtgatgatgcttgaggattttgtttatgttgtttcgttgatcgtggtgttagctttgttttggtgtttctatttattgatttcgaagatagccctttg 146  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||    
T  20740196 ttgtgacgatgcttgaggattttgtttatgttgttttgttgatcgtggtgttagctatattttggtgtttctatttattgatttcggagatagccctttg 20740097  T
Q  147 ttaggaggcgtttcctataggtttttgga-ttttctttattttcactagtgtatgagtttttcattggagacttcccatcatcctttgtttgttgctacc 245  Q
    |||||||||||||| ||||| |||||| | |||||||||||||||   ||||| | | |||||||||| | ||||| | ||||||||||||||||||||     
T  20740096 ttaggaggcgtttcttatagatttttgaatttttctttattttcatgggtgta-ggggttttcattgggggcttccaaccatcctttgtttgttgctact 20739998  T
Q  246 gtaagatttctagcctagcactccttgtgttggttaagattcattcctat 295  Q
    |||||| | ||||| || ||||||||||| ||||||||||||||| ||||    
T  20739997 gtaagactcctagcttaacactccttgtgctggttaagattcattgctat 20739948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 143 - 321
Target Start/End: Complemental strand, 1869427 - 1869249
Alignment:
Q  143 tttgttaggaggcgtttcctataggtttttggatttt-ctttattttcactagtgtatgagtttttcattggagacttcccatcatcctttgtttgttgc 241  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||||||    |||||||||||| |||||| | |||||||||||||||||||||||||    
T  1869427 tttgttaggaggcgtttccaataggtttttggatttttctttattttcagggatgtatgagttttacattgggg-cttcccatcatcctttgtttgttgc 1869329  T
Q  242 taccgtaagatttctagcctagcactccttgtgttggttaagattcattcctatcttaataaattccattttaggttttt 321  Q
    ||  |||||| | | ||||||| | |||||||| |||||||||||||||  ||||||||||||||||||||||| |||||    
T  1869328 taatgtaagactccgagcctagtattccttgtgctggttaagattcattgttatcttaataaattccattttagcttttt 1869249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 29 - 172
Target Start/End: Original strand, 3524057 - 3524213
Alignment:
Q  29 aagttgtttttgtggcagttgtgatgatgcttgaggattttg------------tttatgttgtttcgttgatcgtggtgttagctttgtt-ttggtgtt 115  Q
    ||||||||||||||||||||||||||||| ||||||||||||            |||||||||||||||||||| ||||| |||||||||| ||||||||    
T  3524057 aagttgtttttgtggcagttgtgatgatgtttgaggattttggtacaacttttgtttatgttgtttcgttgatcatggtgatagctttgttgttggtgtt 3524156  T
Q  116 tctatttattgatttcgaagatagccctttgttaggaggcgtttcctataggttttt 172  Q
    ||||||||||||||| | |||||||||||||||| |||||||||||||||| |||||    
T  3524157 tctatttattgattttggagatagccctttgttaagaggcgtttcctatagattttt 3524213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 66 - 172
Target Start/End: Original strand, 34213936 - 34214042
Alignment:
Q  66 ttttgtttatgttgtttcgttgatcgtggtgttagctttgttttggtgtttctatttattgatttcgaagatagccctttgttaggaggcgtttcctata 165  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||||| | |||||||||| ||||| |||||| ||||||||||||||| ||| |||||    
T  34213936 ttttgtttatgttgttttgttgatcgtggtgttaactttgttttggtgctactatttattgttttcggagatagtcctttgttaggaggcattttctata 34214035  T
Q  166 ggttttt 172  Q
    |||||||    
T  34214036 ggttttt 34214042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 17 - 172
Target Start/End: Complemental strand, 21881049 - 21880890
Alignment:
Q  17 tgtggatggtagaagttgtttttgtggcagttgtgatgatgcttgaggat------------tttgtttatgttgtttcgttgatcgtggtgttagcttt 104  Q
    ||||| |||| |||||| |||||||||||||||||| |||| ||||||||            ||||||||||||| ||||||||||||||||||||||||    
T  21881049 tgtgggtggtggaagttatttttgtggcagttgtgacgatgtttgaggattttggtacaacttttgtttatgttgcttcgttgatcgtggtgttagcttt 21880950  T
Q  105 gttttggtgtttctatttattgatttcgaagatagccctttgttaggaggcgtttcctataggttttt 172  Q
    ||||||||| |        ||| ||| | ||||||||||||||| |||||||||||||||||||||||    
T  21880949 gttttggtgct--------ttgtttttggagatagccctttgttgggaggcgtttcctataggttttt 21880890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 66 - 314
Target Start/End: Complemental strand, 21880988 - 21880758
Alignment:
Q  66 ttttgtttatgttgtttcgttgatcgtggtgttagctttgttttggtgtttctatttattgatttcgaagatagccctttgttaggaggcgtttcctata 165  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| ||        || ||| | ||||||||||||||| ||||||||||||||||    
T  21880988 ttttgtttatgttgcttcgttgatcgtggtgttagctttgttttggtgctt--------tgtttttggagatagccctttgttgggaggcgtttcctata 21880897  T
Q  166 ggttttt-ggattttctttattt---tcactagtgtatgagtttttcattggagacttcccatc-atcctttgtttgttgctaccgtaagatttctagcc 260  Q
    ||||||| ||||||| ||| |||   ||||  |||||||           |||| |   ||||| ||||||||| ||||| | |  ||||||| ||||||    
T  21880896 ggttttttggattttttttctttgattcacgggtgtatg-----------ggagcc---ccatccatcctttgtatgttgtt-ctttaagattcctagcc 21880812  T
Q  261 tagcactccttgtgttggttaagattcattcctatcttaataaattccatttta 314  Q
    |||||||||||||| ||||||||||||||| | || |||||||||| |||||||    
T  21880811 tagcactccttgtgctggttaagattcattgcgattttaataaatttcatttta 21880758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 257 - 315
Target Start/End: Complemental strand, 22577366 - 22577308
Alignment:
Q  257 agcctagcactccttgtgttggttaagattcattcctatcttaataaattccattttag 315  Q
    |||||||||||||||||| |||||| || |||||   || |||||||||||||||||||    
T  22577366 agcctagcactccttgtgctggttaggactcattttgattttaataaattccattttag 22577308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 106 - 150
Target Start/End: Original strand, 11139610 - 11139654
Alignment:
Q  106 ttttggtgtttctatttattgatttcgaagatagccctttgttag 150  Q
    ||||||||||||  ||||||||||||||| ||||| |||||||||    
T  11139610 ttttggtgtttccttttattgatttcgaatatagctctttgttag 11139654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 126; Significance: 1e-64; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 66 - 314
Target Start/End: Complemental strand, 20860867 - 20860618
Alignment:
Q  66 ttttgtttatgttgtttcgttgatcgtggtgttagctttgttttggtgtttctatttattgatttcgaagatagccctttgttaggaggcgtttcctata 165  Q
    |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||    
T  20860867 ttttgtttatgttgtttcgttgattgcggtgttagctttgttttggtgtttctatttattggtttcggagatagcccttttttaggaggcgtttcctata 20860768  T
Q  166 ggtttttggattttctttattttcactagtgtatgagtttttcattggagacttcccatc-atcctttgtttgttgctaccgtaagatttctagcctagc 264  Q
    |  |||||||||||  ||   |||||| ||||||||||||| ||||||   || |||||| ||||||||| |||||||||  ||||| | || ||||| |    
T  20860767 gtgttttggatttttctttgattcacttgtgtatgagttttccattgggagctccccatctatcctttgtatgttgctactttaagactcctcgcctaac 20860668  T
Q  265 actccttgtgttggttaagattcattcctatcttaataaattccatttta 314  Q
    |||||||||| ||||||||||||||| | || ||||||||||||||||||    
T  20860667 actccttgtgctggttaagattcattgcgattttaataaattccatttta 20860618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 66 - 314
Target Start/End: Complemental strand, 10408396 - 10408145
Alignment:
Q  66 ttttgtttatgttgtttcgttgatcgtggtgttagctttgttttggtgtttctatttattgatttcgaagatagccctttgttaggaggcgtttcctata 165  Q
    ||||||||||||||||| |||||| ||| ||||| |||| ||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||    
T  10408396 ttttgtttatgttgtttagttgattgtgatgttaactttattttggtgtttctatttattgatttcggagataaccctttgttaggaggtgtttcctata 10408297  T
Q  166 ggt-ttttggattttct-ttattttcactagtgtatgagtttttcattggagacttcccatc-atcctttgtttgttgctaccgtaagatttctagccta 262  Q
    ||| ||||||||||| | ||   ||||   ||||||| ||||| |||||| | || |||||| || |||||| |||||| ||  ||||| ||||||||||    
T  10408296 ggttttttggattttatctttgattcatgggtgtatgggttttccattgggggctccccatctatgctttgtatgttgcaactctaagacttctagccta 10408197  T
Q  263 gcactccttgtgttggttaagattcattcctatcttaataaattccatttta 314  Q
     |||||||| || ||||||||||| |||   || ||||||||||||||||||    
T  10408196 acactccttttgctggttaagatttattgtgattttaataaattccatttta 10408145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 113 - 320
Target Start/End: Complemental strand, 5994148 - 5993937
Alignment:
Q  113 gtttctatttattgatttcgaagatagccctttgttaggaggcgtttcctataggttttt-ggattttctttatt--ttcactagtgtatgagtttttca 209  Q
    |||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||| ||| ||  ||  | |||  ||||||| ||||| ||    
T  5994148 gtttctatctattgatttcgaatatagctctttgttaggaggcgtttcctataggttttttggaattttttctttgatgcacgggtgtatgggttttcca 5994049  T
Q  210 ttggagacttcccatc-atcctttgtttgttgctaccgtaagatttctagcctagcactccttgtgttggttaagattcattcctatcttaataaattcc 308  Q
    ||||||  | |||||| ||||||||| |||||||||  ||||| | |||||||||||||||||||| || |||||||||||| | || ||||||||||||    
T  5994048 ttggaggttccccatctatcctttgtatgttgctactttaagactcctagcctagcactccttgtgctgattaagattcattgcgattttaataaattcc 5993949  T
Q  309 attttaggtttt 320  Q
    ||||||| ||||    
T  5993948 attttagctttt 5993937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 315
Target Start/End: Complemental strand, 6443643 - 6443329
Alignment:
Q  23 tggtagaagttgtttttgtggcagttgtgatgatgcttgaggattttg--------tttatgttgtt-------------tcgttgatcgtggtgttagc 101  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||        |||| ||||||             || ||||| |||||||||||    
T  6443643 tggtggaagttgtttttgtggcagttgtgatgatgtttgaggattttggtacaacttttacgttgttgtgcgaaggtttgtctttgattgtggtgttagc 6443544  T
Q  102 tttg-ttttggtgtttctatttattgatttcgaagatagccctttgttaggaggcgtttccta--taggtttttggattttct-ttattttcactagtgt 197  Q
    |||| ||||||||||||  |||||||||||   ||||||||||||| || | || |||| |||  ||   ||||||||||| | |||  | ||| |||||    
T  6443543 tttgtttttggtgtttccttttattgattttagagatagccctttggtaagtggtgttttctatctattattttggattttatattagatgcacgagtgt 6443444  T
Q  198 atgagtttttcattggagacttcccatc-atcctttgtttgttgctaccgtaagatttctagcctagcactccttgtgttggttaagattcattcctatc 296  Q
    |||||||||||||    | || |||||| ||| ||||| |||||||||  ||||| | |||||||||||||||||||| |||||| ||||||||   ||     
T  6443443 atgagtttttcat----ggctccccatctatcatttgtatgttgctacgataagactcctagcctagcactccttgtgctggttaggattcattgtgatt 6443348  T
Q  297 ttaataaattccattttag 315  Q
    |||||||||| ||||||||    
T  6443347 ttaataaatttcattttag 6443329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 5994236 - 5994189
Alignment:
Q  23 tggtagaagttgtttttgtggcagttgtgatgatgcttgaggattttg 70  Q
    |||| |||||||||||||||| |||||||| |||| ||||||||||||    
T  5994236 tggtggaagttgtttttgtggtagttgtgacgatgtttgaggattttg 5994189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 66 - 96
Target Start/End: Complemental strand, 5994181 - 5994151
Alignment:
Q  66 ttttgtttatgttgtttcgttgatcgtggtg 96  Q
    |||||||||||||||||||||||||||||||    
T  5994181 ttttgtttatgttgtttcgttgatcgtggtg 5994151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 107; Significance: 2e-53; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 66 - 321
Target Start/End: Complemental strand, 43275521 - 43275263
Alignment:
Q  66 ttttgtttatgttgtttcgttgatcgtggtgttagctttgttttggtgtttctatttattgatttcgaagatagccctttgttaggaggcgtttcctata 165  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||  ||||| |||||    
T  43275521 ttttgtttatgttgtttcgttgatcgtggtgttagctttgttttgatgtttctatttattgatttcggagatagccctttgttaggacacgttttctata 43275422  T
Q  166 ggt-ttttggattttctttatt-ttcactagtgtatgagtttttcattggagacttcccatc-atcctttgtttgttgctaccgtaagatttctagccta 262  Q
    ||| ||||||||||| ||| || ||||| ||||||||  |||| |||| | | || ||| || ||||||||| |||||||||  || || | |||| |||    
T  43275421 ggttttttggatttttttttttattcacaagtgtatggattttccatttggggctccccttctatcctttgtatgttgctactttatgactcctaggcta 43275322  T
Q  263 gcactccttgtgttggttaagattcattcctatcttaataaattccattttaggttttt 321  Q
    ||||||||| || || |||||||||||| | || |||||||||| |||| ||| |||||    
T  43275321 gcactccttatgctgattaagattcattgcgattttaataaatttcattctagcttttt 43275263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 70 - 315
Target Start/End: Original strand, 18270266 - 18270513
Alignment:
Q  70 gtttatgttgtttcgttgatcgtggtgttagctttgttttggtgtttctatttattgatttcgaagatagccctttgttaggaggcgtttcctataggtt 169  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||  ||||||| ||||| ||||||||||||||||||||||    
T  18270266 gtttatgttgtttcgttgatcgtgctgttagcttggttttggtgtttctattaattgatttcagagatagctctttgctaggaggcgtttcctataggtt 18270365  T
Q  170 ttt-ggattttctttatt-ttcactagtgtatgagtttttcattggagacttcccatc-atcctttgtttgttgctaccgtaagatttctagcctagcac 266  Q
    ||| ||||||| | | |  |||||  ||||||| |||||||||||||| |  |||||| ||||||||| |||| |||   ||| | |   |||||||||     
T  18270366 ttttggattttttctttgattcacgggtgtatgggtttttcattggaggcaccccatctatcctttgtatgttacta-tttaaaactcacagcctagcat 18270464  T
Q  267 tccttgtgttggttaagattcattcctatcttaataaattccattttag 315  Q
    | |||||   |||||||||||||| | || |||||||||||||||||||    
T  18270465 ttcttgtaccggttaagattcatttcaattttaataaattccattttag 18270513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 66 - 165
Target Start/End: Original strand, 893491 - 893590
Alignment:
Q  66 ttttgtttatgttgtttcgttgatcgtggtgttagctttgttttggtgtttctatttattgatttcgaagatagccctttgttaggaggcgtttcctata 165  Q
    |||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  893491 ttttatttatgttttttcattgatcgtggtgttagctttgttttggtgtttctatttattgatttcagagatagccctttgttaggaggcgtttcctata 893590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 84 - 314
Target Start/End: Original strand, 3364057 - 3364291
Alignment:
Q  84 gttgatcgtggtgttagctttgttttg-gtgtttctatttattgatttcgaagatagccctttgttaggaggcgtttcctataggttttt-ggattt--t 179  Q
    |||||| |||||| ||| ||||||||  |||||| ||||||||||||| | ||||||| |||||| | |||||||||| |||| |||||| ||||||  |    
T  3364057 gttgatggtggtgatagttttgtttttagtgtttttatttattgattttggagatagctctttgtaatgaggcgtttcttataagttttttggatttatt 3364156  T
Q  180 ctttattttcactagtgtatgagtttttcattggagacttcccatc-atcctttgtttgttgctaccgtaagatttctagcctagcactccttgtgttgg 278  Q
    ||||     |||   ||||||||||||||||||| | || | |||| ||||||||| || || |||  ||||| |  || |||| ||||||||||| |||    
T  3364157 ctttgaag-cacggatgtatgagtttttcattgggggctcctcatctatcctttgtatgctgttactttaagactcataacctaacactccttgtgctgg 3364255  T
Q  279 ttaagattcattcctatcttaataaattccatttta 314  Q
    |||||||||||| | || ||||||||||||||||||    
T  3364256 ttaagattcattgcaattttaataaattccatttta 3364291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 230 - 321
Target Start/End: Original strand, 893671 - 893762
Alignment:
Q  230 tttgtttgttgctaccgtaagatttctagcctagcactccttgtgttggttaagattcattcctatcttaataaattccattttaggttttt 321  Q
    ||||| |||| ||||  ||||| | |||||||||||||||||||| ||||||||||| ||| | || ||||||||||||||||||| |||||    
T  893671 tttgtatgtttctactttaagactcctagcctagcactccttgtgctggttaagatttattgcgattttaataaattccattttagcttttt 893762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 69 - 113
Target Start/End: Original strand, 3576867 - 3576911
Alignment:
Q  69 tgtttatgttgtttcgttgatcgtggtgttagctttgttttggtg 113  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||    
T  3576867 tgtttatgttgtttcgttgatcgtgctgttagcttggttttggtg 3576911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 256 - 314
Target Start/End: Original strand, 50735383 - 50735441
Alignment:
Q  256 tagcctagcactccttgtgttggttaagattcattcctatcttaataaattccatttta 314  Q
    ||||||||||||| || || ||||||||||||||| | || |||||||| |||||||||    
T  50735383 tagcctagcactcattttgctggttaagattcattgcaattttaataaactccatttta 50735441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 256 - 314
Target Start/End: Complemental strand, 50777472 - 50777414
Alignment:
Q  256 tagcctagcactccttgtgttggttaagattcattcctatcttaataaattccatttta 314  Q
    ||||||||||||| || || ||||||||||||||| | || |||||||| |||||||||    
T  50777472 tagcctagcactcattttgctggttaagattcattgcaattttaataaactccatttta 50777414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 255 - 315
Target Start/End: Complemental strand, 2566892 - 2566832
Alignment:
Q  255 ctagcctagcactccttgtgttggttaagattcattcctatcttaataaattccattttag 315  Q
    |||| |||||| ||||||||||||||| ||||||||   || |||||||||| ||||||||    
T  2566892 ctagtctagcattccttgtgttggttaggattcattgtgattttaataaatttcattttag 2566832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 43275581 - 43275529
Alignment:
Q  18 gtggatggtagaagttgtttttgtggcagttgtgatgatgcttgaggattttg 70  Q
    |||| |||| |||||||||||||||||| ||||||  ||| ||||||||||||    
T  43275581 gtgggtggtggaagttgtttttgtggcacttgtgacaatgtttgaggattttg 43275529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 98; Significance: 5e-48; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 66 - 321
Target Start/End: Complemental strand, 250844 - 250578
Alignment:
Q  66 ttttgtttatgttgtttcgttgatcgtggtgttagctttgttttggtgtttctatttattgatttcgaagatagccctttgttaggaggcgtttcctata 165  Q
    |||||||||||||||||||||||||||||||||||||||| | | ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  250844 ttttgtttatgttgtttcgttgatcgtggtgttagctttggtcttgtgtttctatttactgatttcggagatagccctttgttaggaggcgtttcctata 250745  T
Q  166 -ggtttttggattttctttatt---ttcactagtgtatgagtttttcattggagacttcccatc-atcctttgtttgttgctaccgtaagatttctagcc 260  Q
     |||||||||||||| ||| ||   |||||  ||||||||| ||| |||||| | || |||||| ||| ||||| ||||||||   ||||| | ||| ||    
T  250744 gggtttttggattttttttctttgattcacgggtgtatgaggtttccattgggggctccccatctatcatttgtatgttgctattttaagactcctaacc 250645  T
Q  261 tagcactc------cttgtgttggttaagattcattcctatcttaataaattccattttaggttttt 321  Q
    ||||||||      |||||| ||||||||||||||| | || |||||| |||| ||||||| |||||    
T  250644 tagcactccttgtgcttgtgctggttaagattcattgcgattttaatacattctattttagcttttt 250578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 94 - 314
Target Start/End: Original strand, 6007 - 6231
Alignment:
Q  94 gtgttagctttgtttt-ggtgtttctatttattgatttcgaagatagccctttgttaggaggcgtttcctat-aggtttttggattttct-ttattttca 190  Q
    |||||||||||||||| |||||||   ||||||||||||||||||| ||||||||||||| | ||||| ||| || |||||||||||| | ||   | ||    
T  6007 gtgttagctttgtttttggtgttttcttttattgatttcgaagataaccctttgttaggatgtgtttcttataagttttttggattttgtctttgatgca 6106  T
Q  191 ctagtgtatgagtttttcattggagacttcccatc-atcctttgtttgttgctaccgtaagatttctagcctagcactccttgtgttggttaagattcat 289  Q
    |   |||||| ||||| |||||| | || |||||| ||||||| | |||||||||  ||||| |  ||||||| ||||||||||| | ||||  ||||||    
T  6107 cggatgtatgggttttccattgggggctccccatctatcctttatatgttgctacattaagactcatagcctaacactccttgtgctagttagaattcat 6206  T
Q  290 tcctatcttaataaattccatttta 314  Q
    |   || ||||||||||| ||||||    
T  6207 tgtgattttaataaattctatttta 6231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 92 - 172
Target Start/End: Complemental strand, 54008 - 53927
Alignment:
Q  92 tggtgttagctttgtttt-ggtgtttctatttattgatttcgaagatagccctttgttaggaggcgtttcctataggttttt 172  Q
    |||||| ||||||||||| ||||||||  ||||||||||| | ||||| ||||||||||||||  ||||||| |||||||||    
T  54008 tggtgtcagctttgtttttggtgtttccttttattgattttggagatatccctttgttaggagatgtttcctgtaggttttt 53927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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