View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5733_low_10 (Length: 239)
Name: NF5733_low_10
Description: NF5733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5733_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 6e-95; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 17 - 232
Target Start/End: Original strand, 40179860 - 40180075
Alignment:
| Q |
17 |
catatggtagagcaaagcaacgattaacttagagtccttctttttggcttcttccaagatctccttagcttgtttcataccaatataataattgccattg |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||| |||||||| |
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| T |
40179860 |
catatggtagagcaaagcaacgattaacttagagtccttctttttggcttcttccaagatctccttagcttgtgtcatataactataataactgccattg |
40179959 |
T |
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| Q |
117 |
ccacacataagagcatcataagtgcgtaagcctatactttccaatagcatcaccatctccaaagcttgtccgatttccccagcatcaacataagccttaa |
216 |
Q |
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|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||| |
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| T |
40179960 |
ccacacgtaagagcatcataagtgtgtaagcctatactttccaatagcatcaccatctccaaagcttgtccgatttccctagcatcaacataggtcttaa |
40180059 |
T |
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| Q |
217 |
taatcacattgaaaac |
232 |
Q |
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|||||||||||||||| |
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| T |
40180060 |
taatcacattgaaaac |
40180075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 38604374 - 38604432
Alignment:
| Q |
20 |
atggtagagcaaagcaacgattaacttagagtccttctttttggcttcttccaagatct |
78 |
Q |
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|||||| |||| ||||| |||||||||||| ||||||||| |||||||||||||||||| |
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| T |
38604374 |
atggtacagcagagcaatgattaacttagaatccttctttctggcttcttccaagatct |
38604432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 195
Target Start/End: Original strand, 38604498 - 38604546
Alignment:
| Q |
147 |
cctatactttccaatagcatcaccatctccaaagcttgtccgatttccc |
195 |
Q |
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| T |
38604498 |
cctatactttccaatagcaacaccatctccaaagcccgtccggtttccc |
38604546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 150 - 208
Target Start/End: Original strand, 34501786 - 34501844
Alignment:
| Q |
150 |
atactttccaatagcatcaccatctccaaagcttgtccgatttccccagcatcaacata |
208 |
Q |
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|||||||||||||||||||||||||||||| | ||||||||||||||||| | |||||| |
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| T |
34501786 |
atactttccaatagcatcaccatctccaaaacctgtccgatttccccagctttaacata |
34501844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 150 - 208
Target Start/End: Complemental strand, 44460898 - 44460840
Alignment:
| Q |
150 |
atactttccaatagcatcaccatctccaaagcttgtccgatttccccagcatcaacata |
208 |
Q |
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|||||||||||||||||||||||||||||| | ||||||||||||||||| | |||||| |
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| T |
44460898 |
atactttccaatagcatcaccatctccaaaacctgtccgatttccccagctttaacata |
44460840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 150 - 208
Target Start/End: Complemental strand, 44468431 - 44468373
Alignment:
| Q |
150 |
atactttccaatagcatcaccatctccaaagcttgtccgatttccccagcatcaacata |
208 |
Q |
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|||||||||||||||||||||||||||||| | ||||||||||||||||| | |||||| |
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| T |
44468431 |
atactttccaatagcatcaccatctccaaaacctgtccgatttccccagctttaacata |
44468373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 44461026 - 44460967
Alignment:
| Q |
19 |
tatggtagagcaaagcaacgattaacttagagtccttctttttggcttcttccaagatct |
78 |
Q |
| |
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||||||| ||||||| || |||||||||| | |||| ||||||||||| ||||||||||| |
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| T |
44461026 |
tatggtacagcaaagtaatgattaacttacaatcctgctttttggctttttccaagatct |
44460967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 44468559 - 44468500
Alignment:
| Q |
19 |
tatggtagagcaaagcaacgattaacttagagtccttctttttggcttcttccaagatct |
78 |
Q |
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||||||| ||||||| || |||||||||| | |||| ||||||||||| ||||||||||| |
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| T |
44468559 |
tatggtacagcaaagtaatgattaacttacaatcctgctttttggctttttccaagatct |
44468500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 150 - 208
Target Start/End: Complemental strand, 46359697 - 46359639
Alignment:
| Q |
150 |
atactttccaatagcatcaccatctccaaagcttgtccgatttccccagcatcaacata |
208 |
Q |
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|
|||||||||||||||||||||||||||||| | ||||||| ||||||||||| |||||| |
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| T |
46359697 |
atactttccaatagcatcaccatctccaaaacctgtccgacttccccagcattaacata |
46359639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 46359825 - 46359766
Alignment:
| Q |
19 |
tatggtagagcaaagcaacgattaacttagagtccttctttttggcttcttccaagatct |
78 |
Q |
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||||||| ||||||| || |||||||||| | |||| ||||||||||||||||||||||| |
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| T |
46359825 |
tatggtacagcaaagtaatgattaacttacaatcctgctttttggcttcttccaagatct |
46359766 |
T |
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