View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5733_low_3 (Length: 492)
Name: NF5733_low_3
Description: NF5733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5733_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 258 - 474
Target Start/End: Original strand, 17268882 - 17269098
Alignment:
| Q |
258 |
ggtggtctaaagttagggttttagtagtcgtatccttggatcggcactgcctaaaacttacggtaaaaatttaacctaccaacatcactgaagattaaac |
357 |
Q |
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| T |
17268882 |
ggtggtctaaagttagggttttagtagtcgtatccttggatcggcactgcctaaaacttactgtaaaaatttaacctaccaacatcactgaagattaaac |
17268981 |
T |
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| Q |
358 |
atatgtgtaacattcatagagacaaggaggtctcagtagtatataatagattgtatactaagatagaccaagtatagaataaaactttaccaaagacggt |
457 |
Q |
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| T |
17268982 |
atatgtgtaacattcatagagacaaggaggcctcaatagtatataatagattgtatactaagatagaccaagtagagaataaaacattaccaaagacggt |
17269081 |
T |
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| Q |
458 |
gttttctgggttcatgg |
474 |
Q |
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| T |
17269082 |
gttttctgggttcatgg |
17269098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 258 - 474
Target Start/End: Original strand, 17261174 - 17261390
Alignment:
| Q |
258 |
ggtggtctaaagttagggttttagtagtcgtatccttggatcggcactgcctaaaacttacggtaaaaatttaacctaccaacatcactgaagattaaac |
357 |
Q |
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| T |
17261174 |
ggtggcctaaatttagggttttagtagtcgtacccttggatcgacacggcctaaaacttatagtaaaaatttaacctaccaacatcactgaagattaaac |
17261273 |
T |
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| Q |
358 |
atatgtgtaacattcatagagacaaggaggtctcagtagtatataatagattgtatactaagatagaccaagtatagaataaaactttaccaaagacggt |
457 |
Q |
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| T |
17261274 |
atatgtgtaacattcatagagacaaggaggtctcagtagtatataatagattgtatactaagatagaccaagtagagaataaaacattaccaaagacggt |
17261373 |
T |
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| Q |
458 |
gttttctgggttcatgg |
474 |
Q |
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| T |
17261374 |
gttttctgggtttatgg |
17261390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 175 - 259
Target Start/End: Original strand, 17268756 - 17268839
Alignment:
| Q |
175 |
atggtcgagcaataattttcaatagtaagggaaccctaaaacaagttttaatatatgtggcatttgttgtcagcacatcatgagg |
259 |
Q |
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| T |
17268756 |
atggtcga-caataattttcaatagtaagggaagcctaaaacaagttttaatatatgtggcatttgttgtccgcacattatgagg |
17268839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 17268559 - 17268627
Alignment:
| Q |
14 |
tatcattcatttggtttttgaatgagtaaatacaaaattctatttggttttttaataatgaaaaataag |
82 |
Q |
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| T |
17268559 |
tatcattcatttggtttttgaatgagtaaatacaaaattctatttggtttttgataaatgaaaagtaag |
17268627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 184 - 257
Target Start/End: Original strand, 17261072 - 17261146
Alignment:
| Q |
184 |
caataattttcaatagtaagggaaccctaaaacaagtttt-aatatatgtggcatttgttgtcagcacatcatga |
257 |
Q |
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| T |
17261072 |
caatatttttcaatagtaagggaagcctaaaacaagttttaaatatatgtgctattttttgccagcacatcatga |
17261146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 96
Target Start/End: Original strand, 17268642 - 17268677
Alignment:
| Q |
61 |
ttttttaataatgaaaaataagtacttatagtcctt |
96 |
Q |
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| T |
17268642 |
ttttttaataatgaaaaataagaacttatagtcctt |
17268677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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