View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5734-Insertion-2 (Length: 473)
Name: NF5734-Insertion-2
Description: NF5734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5734-Insertion-2 |
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| [»] chr1 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 11 - 473
Target Start/End: Complemental strand, 46551128 - 46550666
Alignment:
| Q |
11 |
gttaagatgaagatatttttaatataatataacattaactactcttgaatgacttacactgatgaatgcatcaggatccaaattacaacgccgtatgaaa |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46551128 |
gttaagatgaagatatttttaatataatataacattaactactcttgaatgacttacactgatgaatgcatcaggatccaaattacaacgccgtatgaaa |
46551029 |
T |
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| Q |
111 |
gcatcaactgcggctgaatcttgaccaggaagaatctcaagaacatcaccagtgtcatactcgatagcctgaggaacccaaaacccataagttaattcaa |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46551028 |
gcatcaactgcggctgaatcttgaccaggaagaatctcaagaacatcaccagtgtcatactcgatagcctgaggaacccaaaacccataagttaattcaa |
46550929 |
T |
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| Q |
211 |
agaaggaagatgaataacttcatatctattttaacacatgatgtaagtaaaatagaatccaaatcatggtaaattttgattctatgtatataaaagagct |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
46550928 |
agaaggaagatgaataacttcatatctattttaacacatgatgtaagtaaaatagaatccaaatcatggtaaattgtgattctatgtatataaaagagct |
46550829 |
T |
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| Q |
311 |
ctactgcgtaatacatacgaatttcaacacaagcctttcgtatctttcaacaagatacaaacaccgatgtacaggtacatcaaggttaaagaaataggat |
410 |
Q |
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| T |
46550828 |
ctactgcgtaatacatacgaatttcaacacaagcctttcgtatctttcaacaagatacaaacaccgatgtacaggtacatcaaggttaaagaaataggat |
46550729 |
T |
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| Q |
411 |
aacttacatgtgactcaagttcaaagtcaaaatgacgaacatcttttccacattttggtctgg |
473 |
Q |
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| T |
46550728 |
aacttacatgtgactcaagttcaaattcaaaatgacgaacatcttttccacagtttggtctgg |
46550666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 403; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 11 - 473
Target Start/End: Complemental strand, 1027643 - 1027181
Alignment:
| Q |
11 |
gttaagatgaagatatttttaatataatataacattaactactcttgaatgacttacactgatgaatgcatcaggatccaaattacaacgccgtatgaaa |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||| |
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| T |
1027643 |
gttaagatgaagatatttttaatataatataacattaactactcttgaaagacttacactgatgaatgcatcaggatccaaatcacaacgtcgtatgaaa |
1027544 |
T |
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| Q |
111 |
gcatcaactgcggctgaatcttgaccaggaagaatctcaagaacatcaccagtgtcatactcgatagcctgaggaacccaaaacccataagttaattcaa |
210 |
Q |
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||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
1027543 |
gcatcaacttcagctgaatcttgaccagggagaatctcaagaacatcaccagtgtcatacttgatagcctgaggaacccaaaacccatacgttaattcaa |
1027444 |
T |
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| Q |
211 |
agaaggaagatgaataacttcatatctattttaacacatgatgtaagtaaaatagaatccaaatcatggtaaattttgattctatgtatataaaagagct |
310 |
Q |
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| T |
1027443 |
agaaggaagatgaataacttcatatctattttaacacatgatgtaagtaaaatagattccaaatcatggtaaattttgattctatgtatataaaagaact |
1027344 |
T |
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| Q |
311 |
ctactgcgtaatacatacgaatttcaacacaagcctttcgtatctttcaacaagatacaaacaccgatgtacaggtacatcaaggttaaagaaataggat |
410 |
Q |
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| T |
1027343 |
cttctgcgtaatacatacgaatttcaacacaagccttttgtatctttcaacaagatacaaacaccgatgtacaggtacatcaaggttaaagaaataggat |
1027244 |
T |
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| Q |
411 |
aacttacatgtgactcaagttcaaagtcaaaatgacgaacatcttttccacattttggtctgg |
473 |
Q |
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| T |
1027243 |
aacttacatgtgactcaagttcaaattcaaaatgacgaacatcttttccacagtttgctctgg |
1027181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 11 - 469
Target Start/End: Complemental strand, 40829434 - 40828975
Alignment:
| Q |
11 |
gttaagatgaagatatttttaatata--atataacattaactactcttgaatgacttacactgatgaatgcatcaggatccaaattacaacgccgtatga |
108 |
Q |
| |
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|||||||| ||||||||||||||||| || |||||||||||| |||| || |||||||| |||||| || ||| |||||||||||||| || ||||||| |
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| T |
40829434 |
gttaagatcaagatatttttaatatataatctaacattaactaatcttaaaagacttacagtgatgagtgaatcgggatccaaattacatcgtcgtatga |
40829335 |
T |
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| Q |
109 |
aagcatcaactgcggctgaatcttgaccaggaagaatctcaagaacatcaccagtgtcatactcgatagcctgaggaacccaaaacccataagttaattc |
208 |
Q |
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| T |
40829334 |
aagcatcaactgcagctgaatcttgaccagggagaacttcaagaatatcaccagtgtcatactcaatagcctgaggaacccaaaattcttacatcaattc |
40829235 |
T |
|
| Q |
209 |
aaagaaggaagatgaataacttcatatctattttaacacatgatgtaagtaaaatagaatccaaatcatggtaaattttgattctatgtatataaaagag |
308 |
Q |
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|||||||||||||||||||||||||| ||| ||| ||| ||||||| ||||||||||||||||||| ||||||| ||||||||| |||||||||||| |
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| T |
40829234 |
aaagaaggaagatgaataacttcatagctaatttgacaagtgatgtatataaaatagaatccaaatcacagtaaattgtgattctatatatataaaagag |
40829135 |
T |
|
| Q |
309 |
ctctactgcgtaatacatacgaatttcaacacaagcctttcgtatctttcaacaagatacaaacaccgatgtacaggtacatcaaggttaaagaaatagg |
408 |
Q |
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||||| || |||||||||| |||||||||| | |||||||||||||||||| || || | || ||||||||||||| |||||||||||||| ||| |
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| T |
40829134 |
ctctattgaataatacatacaaatttcaacataggcctttcgtatctttcaa-aaaatgttgaaacatatgtacaggtacaacaaggttaaagaaaaagg |
40829036 |
T |
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| Q |
409 |
ataacttacatgtgactcaagttcaaagtcaaaatgacgaacatcttttccacattttggt |
469 |
Q |
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|| |||||||||||| ||| |||||| |||||||||||||||||||||||| | |||||| |
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| T |
40829035 |
atcacttacatgtgaaacaaattcaaattcaaaatgacgaacatcttttccagagtttggt |
40828975 |
T |
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