View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5734-Insertion-3 (Length: 450)

Name: NF5734-Insertion-3
Description: NF5734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5734-Insertion-3
NF5734-Insertion-3
[»] chr4 (8 HSPs)
chr4 (58-450)||(35748650-35749042)
chr4 (365-449)||(56215605-56215689)
chr4 (365-427)||(40693632-40693694)
chr4 (389-450)||(45652665-45652726)
chr4 (363-443)||(12593605-12593685)
chr4 (386-450)||(29963629-29963693)
chr4 (8-47)||(35749056-35749093)
chr4 (364-443)||(51957518-51957595)
[»] chr5 (3 HSPs)
chr5 (365-450)||(15004710-15004795)
chr5 (362-443)||(30838358-30838439)
chr5 (381-427)||(38097795-38097841)
[»] chr8 (4 HSPs)
chr8 (361-449)||(43066581-43066669)
chr8 (363-450)||(30170715-30170802)
chr8 (361-427)||(26629119-26629185)
chr8 (391-450)||(16585378-16585437)
[»] chr2 (5 HSPs)
chr2 (364-449)||(13453942-13454027)
chr2 (362-450)||(9979093-9979181)
chr2 (363-450)||(22966784-22966871)
chr2 (364-443)||(31227545-31227622)
chr2 (364-424)||(37767778-37767838)
[»] chr1 (3 HSPs)
chr1 (360-449)||(35883594-35883683)
chr1 (363-443)||(12021929-12022008)
chr1 (389-450)||(18982543-18982605)
[»] chr7 (4 HSPs)
chr7 (395-450)||(27306011-27306066)
chr7 (363-426)||(8352772-8352835)
chr7 (387-449)||(24957178-24957240)
chr7 (365-450)||(6892619-6892704)
[»] scaffold0178 (1 HSPs)
scaffold0178 (389-450)||(11539-11600)
[»] chr6 (4 HSPs)
chr6 (387-448)||(20029283-20029344)
chr6 (390-450)||(38621-38681)
chr6 (381-427)||(10840734-10840780)
chr6 (387-450)||(13093648-13093713)
[»] chr3 (4 HSPs)
chr3 (387-442)||(39284663-39284716)
chr3 (362-426)||(47187530-47187594)
chr3 (362-450)||(19623238-19623326)
chr3 (363-443)||(31143268-31143348)
[»] scaffold1625 (1 HSPs)
scaffold1625 (362-450)||(767-855)


Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 58 - 450
Target Start/End: Complemental strand, 35749042 - 35748650
Alignment:
Q  58 cagaaaatgtgaacttccatttaaggaagcaagtactgttgtggccatgacgttttcaactgatagcttctccttggaatagttcatgctcaaatgcaaa 157  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  35749042 cagaaaatgtgaacttccatttaaggaagcaagtactgttgtggccatgacgttttcaactggtagcttctccttggaatagttcatgctcaaatgcaaa 35748943  T
Q  158 tttggctatgttgttggaattgttcaactgttcagtctttacatttcaaaatttcaaacttcaaatagaaagaaattttgagtcagcaagtcgtaacatg 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35748942 tttggctatgttgttggaattgttcaactgttcagtctttacatttcaaaatttcaaacttcaaatagaaagaaattttgagtcagcaagtcgtaacatg 35748843  T
Q  258 gtgctaagtaacgtgatgcgtaattaccttgttaacttactttcttttttgacnnnnnnncttgttaactatttacataaattacgggtactaaataaca 357  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||    
T  35748842 gtgctaagtaacgtgatgcgtgattaccttgttaacttactttcttttttgacaaaaaaacttgttaactatttacataaattacgggtactaaataaca 35748743  T
Q  358 ttcataagagaaatgttatttccacaattactttttaacaatttttgaaacaatcctctctctcatactcgtatgtatttttattccctctct 450  Q
    ||||||||||||||||||||| ||||| |||||||| | |||||||| ||||||| | ||||||||||||  |||| ||||||||| ||||||    
T  35748742 ttcataagagaaatgttatttgcacaactactttttgataatttttggaacaatcatatctctcatactcagatgtgtttttattctctctct 35748650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 365 - 449
Target Start/End: Original strand, 56215605 - 56215689
Alignment:
Q  365 gagaaatgttatttccacaattactttttaacaatttttgaaacaatcctctctctcatactcgtatgtatttttattccctctc 449  Q
    |||||||| |||||  ||||  ||||||| |||| ||||||| ||||| ||||||||||||||  |||| ||||||||| |||||    
T  56215605 gagaaatgatatttgtacaaccactttttgacaacttttgaaccaatcatctctctcatactcacatgtgtttttattctctctc 56215689  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 427
Target Start/End: Complemental strand, 40693694 - 40693632
Alignment:
Q  365 gagaaatgttatttccacaattactttttaacaatttttgaaacaatcctctctctcatactc 427  Q
    |||||||| |||||  ||||||| ||||| ||||||||||| |||| | ||||||||||||||    
T  40693694 gagaaatgatatttatacaattaatttttgacaatttttgagacaaccttctctctcatactc 40693632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 450
Target Start/End: Original strand, 45652665 - 45652726
Alignment:
Q  389 tttttaacaatttttgaaacaatcctctctctcatactcgtatgtatttttattccctctct 450  Q
    ||||| |||| ||||||||||| ||||| ||||||||||  |||| ||||||||| ||||||    
T  45652665 tttttgacaacttttgaaacaaacctctatctcatactcacatgtgtttttattctctctct 45652726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 443
Target Start/End: Complemental strand, 12593685 - 12593605
Alignment:
Q  363 aagagaaatgttatttccacaattactttttaacaatttttgaaacaatcctctctctcatactcgtatgtatttttattc 443  Q
    |||||||||| |||||  | ||||| ||||| ||||||||||||| |||| | |||||||||||   |||| |||||||||    
T  12593685 aagagaaatgatatttatataattattttttgacaatttttgaaataatcatttctctcatacttacatgtgtttttattc 12593605  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 450
Target Start/End: Original strand, 29963629 - 29963693
Alignment:
Q  386 tactttttaacaatttttgaaacaatcctctctctcatactcgtatgtatttttattccctctct 450  Q
    |||||||| |||| ||||||||||||| ||||||| ||||||  || | ||||||||| ||||||    
T  29963629 tactttttgacaacttttgaaacaatcatctctcttatactcacatttgtttttattctctctct 29963693  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 35749093 - 35749056
Alignment:
Q  8 catttctcaacagagtgttgctgctagactttttggaagg 47  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  35749093 catttctcaacag--tgttgctgctagactttttggaagg 35749056  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 443
Target Start/End: Original strand, 51957518 - 51957595
Alignment:
Q  364 agagaaatgttatttccacaattactttttaacaatttttgaaacaatcctctctctcatactcgtatgtatttttattc 443  Q
    ||||||||| |||||  |||| ||||||||||||||| |||||| ||  ||||||||  |||||  ||||||||||||||    
T  51957518 agagaaatgatatttgtacaactactttttaacaattattgaaataa--ctctctcttttactcacatgtatttttattc 51957595  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 365 - 450
Target Start/End: Complemental strand, 15004795 - 15004710
Alignment:
Q  365 gagaaatgttatttccacaattactttttaacaatttttgaaacaatcctctctctcatactcgtatgtatttttattccctctct 450  Q
    |||||||| |||||  ||||  ||||||| |||||||||||||||||| |||||||||||||| | ||| ||||||||| ||||||    
T  15004795 gagaaatgatatttggacaaccactttttgacaatttttgaaacaatcatctctctcatactcatttgtttttttattctctctct 15004710  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 362 - 443
Target Start/End: Complemental strand, 30838439 - 30838358
Alignment:
Q  362 taagagaaatgttatttccacaattactttttaacaatttttgaaacaatcctctctctcatactcgtatgtatttttattc 443  Q
    ||||||||||| |||||  |||  |||||||| |||| ||||||||||| | ||||||||||||||  |||| |||||||||    
T  30838439 taagagaaatgatatttgtacatctactttttgacaacttttgaaacaaccatctctctcatactcacatgtgtttttattc 30838358  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 381 - 427
Target Start/End: Original strand, 38097795 - 38097841
Alignment:
Q  381 acaattactttttaacaatttttgaaacaatcctctctctcatactc 427  Q
    ||||||| |||||||||| ||||||||||||  ||||||||||||||    
T  38097795 acaattattttttaacaacttttgaaacaattatctctctcatactc 38097841  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 361 - 449
Target Start/End: Complemental strand, 43066669 - 43066581
Alignment:
Q  361 ataagagaaatgttatttccacaattactttttaacaatttttgaaacaatcctctctctcatactcgtatgtatttttattccctctc 449  Q
    |||||||||||| |||||  ||||  |||||||||||| ||||||||||||| |||||||||||  | ||||| ||||||||| |||||    
T  43066669 ataagagaaatgatatttgtacaaccactttttaacaacttttgaaacaatcatctctctcatatccatatgtgtttttattctctctc 43066581  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 363 - 450
Target Start/End: Complemental strand, 30170802 - 30170715
Alignment:
Q  363 aagagaaatgttatttccacaattactttttaacaatttttgaaacaatcctctctctcatactcgtatgtatttttattccctctct 450  Q
    |||||||||| |||||  ||||  ||||||| |||| ||||||||||| | ||||||||||||||  |||| ||||||||| ||||||    
T  30170802 aagagaaatgatatttgtacaaccactttttgacaacttttgaaacaaccatctctctcatactcacatgtgtttttattctctctct 30170715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 361 - 427
Target Start/End: Complemental strand, 26629185 - 26629119
Alignment:
Q  361 ataagagaaatgttatttccacaattactttttaacaatttttgaaacaatcctctctctcatactc 427  Q
    |||||||||||| |||||  ||||  ||||||| |||| ||||||||||| ||||||||||||||||    
T  26629185 ataagagaaatgatatttgtacaaccactttttgacaacttttgaaacaaccctctctctcatactc 26629119  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 450
Target Start/End: Complemental strand, 16585437 - 16585378
Alignment:
Q  391 tttaacaatttttgaaacaatcctctctctcatactcgtatgtatttttattccctctct 450  Q
    |||||||| ||||||||||||  ||||||||||||||  |||| ||||||||| ||||||    
T  16585437 tttaacaacttttgaaacaattatctctctcatactcacatgtgtttttattctctctct 16585378  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 364 - 449
Target Start/End: Complemental strand, 13454027 - 13453942
Alignment:
Q  364 agagaaatgttatttccacaattactttttaacaatttttgaaacaatcctctctctcatactcgtatgtatttttattccctctc 449  Q
    ||||||||| ||| |  ||||| ||||||| |||| |||||||||||| |||||||||||||||  |||| ||||||||| |||||    
T  13454027 agagaaatgatatctgtacaatcactttttgacaacttttgaaacaattctctctctcatactcacatgtgtttttattctctctc 13453942  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 362 - 450
Target Start/End: Original strand, 9979093 - 9979181
Alignment:
Q  362 taagagaaatgttatttccacaattactttttaacaatttttgaaacaatcctctctctcatactcgtatgtatttttattccctctct 450  Q
    ||||||||||| |||||  ||||  ||||||| ||||||||||  |||| | ||||||||||||||  |||| ||||||||| ||||||    
T  9979093 taagagaaatgatatttgtacaaccactttttcacaatttttgtgacaaccatctctctcatactcacatgtgtttttattctctctct 9979181  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 450
Target Start/End: Original strand, 22966784 - 22966871
Alignment:
Q  363 aagagaaatgttatttccacaattactttttaacaatttttgaaacaatcctctctctcatactcgtatgtatttttattccctctct 450  Q
    |||||||||| |||||  ||||  ||||||| | || ||||||||||| ||||||||||||| ||  |||| ||||||||| ||||||    
T  22966784 aagagaaatgatatttgtacaaccactttttgataacttttgaaacaaccctctctctcatattcacatgtgtttttattctctctct 22966871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 443
Target Start/End: Complemental strand, 31227622 - 31227545
Alignment:
Q  364 agagaaatgttatttccacaattactttttaacaatttttgaaacaatcctctctctcatactcgtatgtatttttattc 443  Q
    ||||||||| ||| |  ||||| ||||||| |||| |||||||||||  |||||||||||||||  |||| |||||||||    
T  31227622 agagaaatgatatgtgtacaatcactttttgacaacttttgaaacaa--ctctctctcatactcacatgtttttttattc 31227545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 424
Target Start/End: Complemental strand, 37767838 - 37767778
Alignment:
Q  364 agagaaatgttatttccacaattactttttaacaatttttgaaacaatcctctctctcata 424  Q
    ||||||||| |||||  ||||  ||||||| |||| ||||||||||||| |||||||||||    
T  37767838 agagaaatgatatttatacaaccactttttgacaacttttgaaacaatcatctctctcata 37767778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 360 - 449
Target Start/End: Complemental strand, 35883683 - 35883594
Alignment:
Q  360 cataagagaaatgttatttccacaattactttttaacaatttttgaaacaatcctctctctcatactcgtatgtatttttattccctctc 449  Q
    ||||||||||||| |||||  ||||||| ||||| |||| ||||||||||| | | ||||||||||||  |||| ||||||||| |||||    
T  35883683 cataagagaaatgatatttgtacaattattttttgacaacttttgaaacaaccatatctctcatactcacatgtgtttttattctctctc 35883594  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 443
Target Start/End: Complemental strand, 12022008 - 12021929
Alignment:
Q  363 aagagaaatgttatttccacaattactttttaacaatttttgaaacaatcctctctctcatactcgtatgtatttttattc 443  Q
    |||||||||| || ||  ||||||||||||| |||| ||||||||||| ||  ||||||||||||  ||||||||||||||    
T  12022008 aagagaaatgatacttttacaattactttttgacaacttttgaaacaa-cccatctctcatactcaaatgtatttttattc 12021929  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 450
Target Start/End: Original strand, 18982543 - 18982605
Alignment:
Q  389 tttttaacaatttttgaaacaatcctctctctcatactcgta-tgtatttttattccctctct 450  Q
    |||||||||| |||||  |||| |||||||||||||||| || ||||||||||||| ||||||    
T  18982543 tttttaacaacttttgtgacaaccctctctctcatactcttattgtatttttattctctctct 18982605  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 395 - 450
Target Start/End: Complemental strand, 27306066 - 27306011
Alignment:
Q  395 acaatttttgaaacaatcctctctctcatactcgtatgtatttttattccctctct 450  Q
    |||| ||||||||||||||||||||||||||||  |||| ||||||||| ||||||    
T  27306066 acaacttttgaaacaatcctctctctcatactcacatgtgtttttattctctctct 27306011  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 426
Target Start/End: Original strand, 8352772 - 8352835
Alignment:
Q  363 aagagaaatgttatttccacaattactttttaacaatttttgaaacaatcctctctctcatact 426  Q
    |||||||||| |||||  ||||  ||||||| |||||||||||||||| | |||||||||||||    
T  8352772 aagagaaatgatatttatacaaccactttttgacaatttttgaaacaaccatctctctcatact 8352835  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 449
Target Start/End: Complemental strand, 24957240 - 24957178
Alignment:
Q  387 actttttaacaatttttgaaacaatcctctctctcatactcgtatgtatttttattccctctc 449  Q
    ||||||| ||||||||||  |||| ||||||||||||||||  |||| ||||||||| |||||    
T  24957240 actttttgacaatttttggcacaaccctctctctcatactcacatgtgtttttattctctctc 24957178  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 450
Target Start/End: Complemental strand, 6892704 - 6892619
Alignment:
Q  365 gagaaatgttatttccacaattactttttaacaatttttgaaacaatcctctctctcatactcgtatgtatttttattccctctct 450  Q
    |||||||| |||||  ||||  ||| ||| |||| || |||||||| ||||||||||||||||  |||| ||||||||| ||||||    
T  6892704 gagaaatgatatttgtacaaccactctttgacaacttatgaaacaaccctctctctcatactcacatgtgtttttattctctctct 6892619  T

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Target: scaffold0178 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 389 - 450
Target Start/End: Complemental strand, 11600 - 11539
Alignment:
Q  389 tttttaacaatttttgaaacaatcctctctctcatactcgtatgtatttttattccctctct 450  Q
    ||||| |||| |||||||||||| |||||||||||||||  |||| ||||||||| ||||||    
T  11600 tttttgacaacttttgaaacaattctctctctcatactcaaatgtgtttttattctctctct 11539  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 387 - 448
Target Start/End: Original strand, 20029283 - 20029344
Alignment:
Q  387 actttttaacaatttttgaaacaatcctctctctcatactcgtatgtatttttattccctct 448  Q
    |||||||||||| ||||||||||| | ||||||||||||||  |||| ||||||||| ||||    
T  20029283 actttttaacaacttttgaaacaaccttctctctcatactcacatgtgtttttattctctct 20029344  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 450
Target Start/End: Original strand, 38621 - 38681
Alignment:
Q  390 ttttaacaatttttgaaacaatcctctctctcatactcgtatgtatttttattccctctct 450  Q
    |||| |||| ||| ||||||| ||||||||||||||||  |||||||||||||| ||||||    
T  38621 ttttgacaactttggaaacaaccctctctctcatactcacatgtatttttattctctctct 38681  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 381 - 427
Target Start/End: Original strand, 10840734 - 10840780
Alignment:
Q  381 acaattactttttaacaatttttgaaacaatcctctctctcatactc 427  Q
    ||||||| ||||| |||| ||||| ||||||||||||||||||||||    
T  10840734 acaattattttttgacaacttttggaacaatcctctctctcatactc 10840780  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 450
Target Start/End: Original strand, 13093648 - 13093713
Alignment:
Q  387 actttttaacaatttttgaaacaa-tc-ctctctctcatactcgtatgtatttttattccctctct 450  Q
    ||||||| |||| ||||||||||| || ||||||||||||||| ||||| ||||||||| ||||||    
T  13093648 actttttgacaacttttgaaacaactctctctctctcatactcatatgtgtttttattctctctct 13093713  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 442
Target Start/End: Complemental strand, 39284716 - 39284663
Alignment:
Q  387 actttttaacaatttttgaaacaatcctctctctcatactcgtatgtatttttatt 442  Q
    ||||||| |||| |||||||||||  ||||||||||||||| ||||||||||||||    
T  39284716 actttttgacaacttttgaaacaa--ctctctctcatactcatatgtatttttatt 39284663  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 362 - 426
Target Start/End: Complemental strand, 47187594 - 47187530
Alignment:
Q  362 taagagaaatgttatttccacaattactttttaacaatttttgaaacaatcctctctctcatact 426  Q
    |||||| |||| |||||  ||||||||||||| |||| ||||||||||| ||| |||||||||||    
T  47187594 taagaggaatgatatttgtacaattactttttcacaacttttgaaacaaccctttctctcatact 47187530  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 450
Target Start/End: Complemental strand, 19623326 - 19623238
Alignment:
Q  362 taagagaaatgttatttccacaattactttttaacaatttttgaaacaatcctctctctcatactcgtatgtatttttattccctctct 450  Q
    ||||||||||| |||||  ||||| ||||||| | || |||| |||||||  |||||||||||||   |||| ||||||||| ||||||    
T  19623326 taagagaaatgatatttgtacaatcactttttgataacttttaaaacaataatctctctcatacttacatgtctttttattctctctct 19623238  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 443
Target Start/End: Original strand, 31143268 - 31143348
Alignment:
Q  363 aagagaaatgttatttccacaattactttttaacaatttttgaaacaatcctctctctcatactcgtatgtatttttattc 443  Q
    ||||||| || |||||  ||||| | ||||| |||| ||||||||||||| ||||||| ||||||  |||| |||||||||    
T  31143268 aagagaagtgatatttgtacaatcattttttgacaacttttgaaacaatcatctctctaatactcacatgtgtttttattc 31143348  T

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Target: scaffold1625 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1625
Description:

Target: scaffold1625; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 450
Target Start/End: Complemental strand, 855 - 767
Alignment:
Q  362 taagagaaatgttatttccacaattactttttaacaatttttgaaacaatcctctctctcatactcgtatgtatttttattccctctct 450  Q
    |||||| |||| |||||  ||||| | ||||| |||| ||||||||||| | ||||||||||||||  |||| |||| |||| ||||||    
T  855 taagaggaatgatatttgtacaatcattttttgacaacttttgaaacaaccatctctctcatactcacatgtgttttaattctctctct 767  T

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