View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5734_high_1 (Length: 1225)

Name: NF5734_high_1
Description: NF5734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5734_high_1
NF5734_high_1
[»] chr2 (9 HSPs)
chr2 (607-1204)||(40849155-40849757)
chr2 (1-314)||(40848551-40848862)
chr2 (367-554)||(40848915-40849102)
chr2 (979-1208)||(40843592-40843821)
chr2 (735-826)||(40843431-40843522)
chr2 (732-826)||(40838714-40838808)
chr2 (1061-1208)||(40839056-40839203)
chr2 (611-683)||(40843348-40843420)
chr2 (611-701)||(40838626-40838716)
[»] chr4 (3 HSPs)
chr4 (760-800)||(21146898-21146938)
chr4 (760-824)||(21151475-21151539)
chr4 (760-799)||(21126805-21126844)
[»] chr6 (1 HSPs)
chr6 (1-39)||(8131902-8131940)


Alignment Details
Target: chr2 (Bit Score: 546; Significance: 0; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 607 - 1204
Target Start/End: Original strand, 40849155 - 40849757
Alignment:
Q  607 tgtattttattcatccttccaatgttcacaaggaaatgccattaatgtgtatacaataaga-----atctgatttttgttttaagatgagtgcattatat 701  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     || |||||||||||||||||||||||||||||||    
T  40849155 tgtattttattcatccttccaatgttcacaaggaaatgccattaatgtgtatacaataagataagaatgtgatttttgttttaagatgagtgcattatat 40849254  T
Q  702 agacgagacattatctcctccctttgtccttatcagtttcccttgcatccaatcttttaacatctgaagtgcagcttttggttgatccataggaaccatg 801  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40849255 agacgagacattatctcctccctttgtccttatcagtttcccttgcatccaatcttttaacatctgaagtgcagcttttggttgatccataggaaccatg 40849354  T
Q  802 tgaccagcctctttcacctattgttnnnnnnntaaggaagttagacacaggcgaatcaataactacagagcaccgatacaacatcaatagtgagacatgt 901  Q
    |||||||||||||||||||||||||       ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  40849355 tgaccagcctctttcacctattgttaaaaaaataaggaagttaaacacaggcgaatcaataactacagagcaccgatacaatatcaatagtgagacatgt 40849454  T
Q  902 aaacatcagtaacaatttgagaaaataaaaatggtcgaatgcaaatgcttgtctcgatgtcgaatcatgcattgaaaaccaaacacacatttagtttgaa 1001  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40849455 aaacatcagtaacaatttgagaaaataaaaatgatcgaatgcaaatgcttgtctcgatgtcgaatcatgcattgaaaaccaaacacacatttagtttgaa 40849554  T
Q  1002 gtgtcagtgctatatagatcaatcgtctaatacactaaagaatacatccttcaacacaaaccttgaggaaagcaagaggtccgtggcttttcagatctcc 1101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40849555 gtgtcagtgctatatagatcaatcgtctaatacactaaagaatacatccttcaacacaaaccttgaggaaagcaagaggtccgtggcttttcagatctcc 40849654  T
Q  1102 tgcttcttcactatcaaccaaatatggggtcgtaggagacaccttaaattctttttgacctgaccacgtcatggcatcgacccaccttgaattccctgcc 1201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40849655 tgcttcttcactatcaaccaaatatggggtcgtaggagacaccttaaattctttttgacctgaccacgtcatggcatcgacccaccttgaattccctgcc 40849754  T
Q  1202 aaa 1204  Q
    |||    
T  40849755 aaa 40849757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 40848551 - 40848862
Alignment:
Q  1 aaaatatactcttctttcacggtaacgtatctaattagttgaattatttcgtaacttttcatttgcattcgtagatttgcatggtataaatgannnnnnn 100  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  40848551 aaaatatactcttctttcacggtaacgtatctatttagttgaattatttcgtaacttttcatttgcattcgtagatttgcatggtataaatgattttttt 40848650  T
Q  101 nnnnnnnngttctggagggacatttgaatcattctcatcattttcttccgttttcttctaaaacactctatagctcatttggtgctttccccttttcccc 200  Q
            ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||   |||||| |||||||     
T  40848651 ttgtttttgttctggagggacatttgaatcattctcatcattttcttccgtttccttctaaaactctctatagctcatttggctgtttccc-ttttccca 40848749  T
Q  201 gtgttatgtctattaatcataaactgagtgcacctcattcatttattgaatcattgtaaaatagaaaaatgattacaacctaagtgaaggaggaggatac 300  Q
     |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40848750 ttgttatgtctattaatcataaactgagtgcacctcattcatt-attgaatcattgtaaaatagaaaaatgattacaacctaagtgaaggaggaggatac 40848848  T
Q  301 tccttttatataag 314  Q
    ||||||||||||||    
T  40848849 tccttttatataag 40848862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 165; E-Value: 1e-87
Query Start/End: Original strand, 367 - 554
Target Start/End: Original strand, 40848915 - 40849102
Alignment:
Q  367 ttagttagtgagcctaaatcttattcattgcctatagtgtatctcgttgatttgtttgtaatagtaaaatttgaagacatttgtaatgaagtttatacat 466  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  40848915 ttagttagtgagccttaatcttattcattgcctatagtgtatctcgttgatttgtttgtaatagtaaaatttgaagacatttgtaatgaagtttacacat 40849014  T
Q  467 tcgattttccaatcac-gtttataactctacaagtgtagagaaaaccatgaagagcatagtctaatcaaattggtattgagaatttaag 554  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  40849015 tcgattttccaatcactgtttataactctacaagtgtagagaaaaccatgaagagcatagtctaatc-aattggtattgagaatttaag 40849102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 86; E-Value: 2e-40
Query Start/End: Original strand, 979 - 1208
Target Start/End: Original strand, 40843592 - 40843821
Alignment:
Q  979 accaaacacacatttagtttgaagtgtcagtgctatatagatcaatcgtctaatacactaaagaatacatccttcaacacaaaccttgaggaaagcaaga 1078  Q
    |||| |||||| |||| ||||||||||| || |||| ||||||||| | ||  ||  || | |||||||||||| |||||||||||| |||||||| | |    
T  40843592 accagacacacttttaatttgaagtgtctgtactatgtagatcaatagactcttatgctcatgaatacatccttaaacacaaaccttaaggaaagccaaa 40843691  T
Q  1079 ggtccgtggcttttcagatctcctgcttcttcactatcaaccaaatatggggtcgtaggagacaccttaaattctttttgacctgaccacgtcatggcat 1178  Q
    ||||| ||||||||||||  |||||||||||||||||| |||||| |||  || ||||||||| ||||||||  | | |||||||||||| |||||||||    
T  40843692 ggtccatggcttttcagaattcctgcttcttcactatccaccaaaaatgaagttgtaggagactccttaaatgttgtctgacctgaccacttcatggcat 40843791  T
Q  1179 cgacccaccttgaattccctgccaaatgag 1208  Q
    | |||||||| |||||||||  ||||||||    
T  40843792 caacccacctcgaattccctaacaaatgag 40843821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 84; E-Value: 3e-39
Query Start/End: Original strand, 735 - 826
Target Start/End: Original strand, 40843431 - 40843522
Alignment:
Q  735 cagtttcccttgcatccaatcttttaacatctgaagtgcagcttttggttgatccataggaaccatgtgaccagcctctttcacctattgtt 826  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40843431 cagtttcccttgcatccaatcttgtaacatctgaagtgcaacttttggttgatccataggaaccatgtgaccagcctctttcacctattgtt 40843522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 79; E-Value: 3e-36
Query Start/End: Original strand, 732 - 826
Target Start/End: Original strand, 40838714 - 40838808
Alignment:
Q  732 tatcagtttcccttgcatccaatcttttaacatctgaagtgcagcttttggttgatccataggaaccatgtgaccagcctctttcacctattgtt 826  Q
    ||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  40838714 tatcagtttcccttgcatccattcttgtaacatctgaagtgcaacttttggttgatccataggaaccatgtgaccagcctctttcaactattgtt 40838808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 68; E-Value: 9e-30
Query Start/End: Original strand, 1061 - 1208
Target Start/End: Original strand, 40839056 - 40839203
Alignment:
Q  1061 accttgaggaaagcaagaggtccgtggcttttcagatctcctgcttcttcactatcaaccaaatatggggtcgtaggagacaccttaaattctttttgac 1160  Q
    |||||| ||||||| |  ||||| ||||||||||||  ||||||||||||||||||||||||| | || || ||||||||| ||||| || || | ||||    
T  40839056 accttgcggaaagccaatggtccatggcttttcagaattcctgcttcttcactatcaaccaaaaacggagttgtaggagactccttatatgctgtctgac 40839155  T
Q  1161 ctgaccacgtcatggcatcgacccaccttgaattccctgccaaatgag 1208  Q
    |||||||| |||||||||| | |||||||||||||||| |||||||||    
T  40839156 ctgaccacttcatggcatcaatccaccttgaattccctaccaaatgag 40839203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 611 - 683
Target Start/End: Original strand, 40843348 - 40843420
Alignment:
Q  611 ttttattcatccttccaatgttcacaaggaaatgccattaatgtgtatacaataagaatctgatttttgtttt 683  Q
    ||||||||||| |||||||||| ||||||||||||||||||||| ||||||| |||||| ||||||| |||||    
T  40843348 ttttattcatcattccaatgtttacaaggaaatgccattaatgtttatacaacaagaatgtgattttggtttt 40843420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 611 - 701
Target Start/End: Original strand, 40838626 - 40838716
Alignment:
Q  611 ttttattcatccttccaatgttcacaaggaaatgccattaatgtgtatacaataagaatctgatttttgttttaagatgagtgcattatat 701  Q
    ||||||||||  |||||||||||||||||||||| ||||||||| || |||| |||||| ||||||| |||||  | ||||||||| ||||    
T  40838626 ttttattcattattccaatgttcacaaggaaatgacattaatgtttagacaacaagaatgtgattttggttttgtgctgagtgcatcatat 40838716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 760 - 800
Target Start/End: Complemental strand, 21146938 - 21146898
Alignment:
Q  760 aacatctgaagtgcagcttttggttgatccataggaaccat 800  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  21146938 aacatctgaagtgcagcttttggttgatccatagggaccat 21146898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 760 - 824
Target Start/End: Complemental strand, 21151539 - 21151475
Alignment:
Q  760 aacatctgaagtgcagcttttggttgatccataggaaccatgtgaccagcctctttcacctattg 824  Q
    |||||||| | |||||||||||||||||||||||| ||||| || ||||| || |||||||||||    
T  21151539 aacatctgtaatgcagcttttggttgatccatagggaccatatgtccagcatcattcacctattg 21151475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 760 - 799
Target Start/End: Complemental strand, 21126844 - 21126805
Alignment:
Q  760 aacatctgaagtgcagcttttggttgatccataggaacca 799  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  21126844 aacatctgaagtgcagcttttggttgatccatagggacca 21126805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 8131940 - 8131902
Alignment:
Q  1 aaaatatactcttctttcacggtaacgtatctaattagt 39  Q
    |||||||||||| ||||||||||||| ||||||||||||    
T  8131940 aaaatatactctactttcacggtaacatatctaattagt 8131902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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