View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5734_low_10 (Length: 239)
Name: NF5734_low_10
Description: NF5734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5734_low_10 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 39295671 - 39295892
Alignment:
| Q |
18 |
acagagaaagcaggaacatggctttggattcctccatggacaagaaacaattctcaagctattagttcaactaggactcaaagtcgagctagtagtcact |
117 |
Q |
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| T |
39295671 |
acagagaaagcaggaacatggctttggattcctccatggacaagaaacaattctcaagctattagttcaactaggactcaaagtcgagctagtagtcact |
39295770 |
T |
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| Q |
118 |
tctgtgacatcaacattgatgctgacgatgatgagtatgaatttctagctgaaattcaggacatggaaaataaccaagagagagttgaggtactaccaaa |
217 |
Q |
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| T |
39295771 |
tctgtgacatcaacattgatgctgacgatgatgagtatgaatttctagctcaagttcaggacatggaaaataaccaagagaaagttgaggtactaccaaa |
39295870 |
T |
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| Q |
218 |
gtctgacataccaacaaaaaat |
239 |
Q |
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| T |
39295871 |
gtctgacataccaacaaaaaat |
39295892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 99 - 217
Target Start/End: Original strand, 39288869 - 39288987
Alignment:
| Q |
99 |
agtcgagctagtagtcacttctgtgacatcaacattgatgctgacgatgatgagtatgaatttctagctgaaattcaggacatggaaaataaccaagaga |
198 |
Q |
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| T |
39288869 |
agtcgagcaagtagtcatttttgtgacatcaacattgatgctgatgatgttgagtatgaatttctagctgaagttcaagacatagaaaataaccaagaaa |
39288968 |
T |
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| Q |
199 |
gagttgaggtactaccaaa |
217 |
Q |
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| T |
39288969 |
aagttaaggtactaccaaa |
39288987 |
T |
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