View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5734_low_3 (Length: 392)
Name: NF5734_low_3
Description: NF5734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5734_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 48258562 - 48258912
Alignment:
| Q |
1 |
tcatcatgtcattggatgtcttgaagaatgcttagttgctatttggcttacaatatagatcattttgttcctacaggtagaacatgttagagctgagagg |
100 |
Q |
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| T |
48258562 |
tcatcatgtcattggatgtcttgaagaatgcttagttgctattttgcttacaatatagatcattttgttcctacaggtagaacatgttagagctgagagg |
48258661 |
T |
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| Q |
101 |
aacttactggccgaagtcgccagtcactgcattgtgaaactttactactcatttcaagatactgaatacttgtatttaattatggagtatctgcccgggg |
200 |
Q |
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| T |
48258662 |
aacttactggccgaagtcgccagtcactgcattgtgaaactttactactcatttcaagatactgaatacttgtatttaattatggagtatctgcccgggg |
48258761 |
T |
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| Q |
201 |
gtgacatcatgactctgcttatgagggaagataccttaagtgagaacgtggctagattttacatggcacagagtgttctggccatagagtctattcataa |
300 |
Q |
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| T |
48258762 |
gtgacatcatgactctgcttatgagggaagacaccttaagtgagaacgtggctagattttacatggcacagagtgttctggccatagagtctattcataa |
48258861 |
T |
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| Q |
301 |
gcacaattacattcacaggtttagtttggctctgcctatgaaagctgttgg |
351 |
Q |
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| T |
48258862 |
gcacaattacattcacaggtttagtttggctctgcctatgaaagctgttgg |
48258912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 83 - 315
Target Start/End: Original strand, 17609784 - 17610016
Alignment:
| Q |
83 |
catgttagagctgagaggaacttactggccgaagtcgccagtcactgcattgtgaaactttactactcatttcaagatactgaatacttgtatttaatta |
182 |
Q |
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| T |
17609784 |
catgttagagctgaaaggaatgtacttgcagaagttgcgaatgactgcattgtgaaactttattactcatttcaagatcctgaattcttatatcttataa |
17609883 |
T |
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| Q |
183 |
tggagtatctgcccgggggtgacatcatgactctgcttatgagggaagataccttaagtgagaacgtggctagattttacatggcacagagtgttctggc |
282 |
Q |
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| T |
17609884 |
tggaatatttacctggtggcgatataatgactttgttgatgagggaagaaactttgacagaaagtgtggcaagattttacatcgcccaaaccgttttggc |
17609983 |
T |
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| Q |
283 |
catagagtctattcataagcacaattacattca |
315 |
Q |
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| T |
17609984 |
catcgagtctattcataaacacaattacgttca |
17610016 |
T |
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