View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5734_low_4 (Length: 312)
Name: NF5734_low_4
Description: NF5734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5734_low_4 |
 | |
|
| [»] scaffold0095 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0095 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: scaffold0095
Description:
Target: scaffold0095; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 33 - 295
Target Start/End: Original strand, 26821 - 27092
Alignment:
| Q |
33 |
gaaataaacaaacctggttttggattgagttgaaaagggatgaaaagagattcaacatcccggagtgaaccttcaccggctcctcctcttccttattccg |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26821 |
gaaataaacaaacctggttttggattgagttgaaaagggaagaaaagagattcaacatcccggagtgaaccttcaccggctcctcctcttccttattccg |
26920 |
T |
|
| Q |
133 |
acgcgtcgaaaacaacggcactccaccgatactt---------tccaacgttctccaactcggatcggatcccccgccggccatttgaacgccggagaaa |
223 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
26921 |
acgcgtcgaaaacaacggcactccaccaatactttccaaaggctccaacgttctccaactcggatcggatcccccgccggccatttgaaagccggagaaa |
27020 |
T |
|
| Q |
224 |
gctacatacacgacgtttccaacacgctccaccacaaaactgcggaggttgacagcggaggcgttggccttg |
295 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
27021 |
gctacatacacgacgttgccaacacgctccaccacaaaactgcggaagttgacagcggaggcgttgaccttg |
27092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 33 - 295
Target Start/End: Original strand, 39402863 - 39403134
Alignment:
| Q |
33 |
gaaataaacaaacctggttttggattgagttgaaaagggatgaaaagagattcaacatcccggagtgaaccttcaccggctcctcctcttccttattccg |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39402863 |
gaaataaacaaacctggttttggattgagttgaaaagggaagaaaagagattcaacatcccggagtgaaccttcaccggctcctcctcttccttattccg |
39402962 |
T |
|
| Q |
133 |
acgcgtcgaaaacaacggcactccaccgatactt---------tccaacgttctccaactcggatcggatcccccgccggccatttgaacgccggagaaa |
223 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
39402963 |
acgcgtcgaaaacaacggcactccaccaatactttccaaaggctccaacgttctccaactcggatcggatcccccgccggccatttgaaagccggagaaa |
39403062 |
T |
|
| Q |
224 |
gctacatacacgacgtttccaacacgctccaccacaaaactgcggaggttgacagcggaggcgttggccttg |
295 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
39403063 |
gctacatacacgacgttgccaacacgctccaccacaaaactgcggaagttgacagcggaggcgttgaccttg |
39403134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University