View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5734_low_5 (Length: 301)

Name: NF5734_low_5
Description: NF5734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5734_low_5
NF5734_low_5
[»] chr6 (2 HSPs)
chr6 (66-167)||(21264342-21264443)
chr6 (197-233)||(21264267-21264303)
[»] chr7 (5 HSPs)
chr7 (107-279)||(883749-883924)
chr7 (107-279)||(1243078-1243253)
chr7 (72-167)||(19087385-19087483)
chr7 (97-151)||(21261914-21261968)
chr7 (107-155)||(44235372-44235420)
[»] chr8 (4 HSPs)
chr8 (73-133)||(10113039-10113099)
chr8 (236-279)||(13895983-13896026)
chr8 (180-224)||(12525139-12525183)
chr8 (179-223)||(12367509-12367553)
[»] scaffold0040 (1 HSPs)
scaffold0040 (67-276)||(49753-49965)
[»] chr4 (6 HSPs)
chr4 (118-276)||(52831466-52831623)
chr4 (180-276)||(24418208-24418304)
chr4 (187-230)||(20435490-20435533)
chr4 (180-258)||(20988783-20988861)
chr4 (179-284)||(31736111-31736215)
chr4 (236-276)||(24474113-24474153)
[»] chr3 (4 HSPs)
chr3 (179-231)||(13799990-13800042)
chr3 (74-152)||(9198039-9198117)
chr3 (179-276)||(43822539-43822643)
chr3 (179-227)||(32582514-32582562)
[»] chr1 (5 HSPs)
chr1 (179-279)||(31117697-31117797)
chr1 (179-231)||(21516607-21516660)
chr1 (180-276)||(32359193-32359289)
chr1 (184-227)||(20791924-20791967)
chr1 (96-153)||(1714052-1714109)
[»] chr2 (2 HSPs)
chr2 (197-279)||(40909921-40910003)
chr2 (236-276)||(12238601-12238641)
[»] chr5 (2 HSPs)
chr5 (179-276)||(9004832-9004930)
chr5 (179-223)||(32882792-32882836)


Alignment Details
Target: chr6 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 66 - 167
Target Start/End: Complemental strand, 21264443 - 21264342
Alignment:
Q  66 gatagtgaataagttagttgattgattctatagtatttggcaaaattaatggttgatgtagtttataaatataaaatgacgtaaaaaatgcatttaatta 165  Q
    ||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21264443 gatagtgaataagttagttgattgattctctagtgtttgacaaaattaatggttgatgtagtttataaatataaaatgacgtaaaaaatgcatttaatta 21264344  T
Q  166 at 167  Q
    ||    
T  21264343 at 21264342  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 233
Target Start/End: Original strand, 21264267 - 21264303
Alignment:
Q  197 taaaattgaaataaaaagtgacaagctataaacttat 233  Q
    ||||||| |||||||||||||||||||||||||||||    
T  21264267 taaaattaaaataaaaagtgacaagctataaacttat 21264303  T

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Target: chr7 (Bit Score: 52; Significance: 8e-21; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 107 - 279
Target Start/End: Complemental strand, 883924 - 883749
Alignment:
Q  107 aaaattaatggttgatgtagtttataaatataaaatgacgtaaaaaatg--catttaattaat-tttannnnnnncaattaagattgtagggttaaaatt 203  Q
    |||||||| |||||| |||| |||||||||| ||||||| |||||||||  |||||||||| | ||||       |||||| ||||| |||| ||||||     
T  883924 aaaattaacggttgaagtagcttataaatatgaaatgacataaaaaatgtgcatttaattagtatttatttttttcaattaggattgcaggggtaaaatg 883825  T
Q  204 gaaataaaaagtgacaagctataaacttatacaattaacttatcaaaaactgctataaactcatgaaaataagtta 279  Q
    || ||||||||||| || |||||||||  |  ||||||||||||| ||||| |||||  |||||||||||||||||    
T  883824 gagataaaaagtgataaactataaactacttgaattaacttatcagaaacttctatatgctcatgaaaataagtta 883749  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 107 - 279
Target Start/End: Complemental strand, 1243253 - 1243078
Alignment:
Q  107 aaaattaatggttgatgtagtttataaatataaaatgacgtaaaaaatg--catttaattaat-tttannnnnnncaattaagattgtagggttaaaatt 203  Q
    |||||||| |||||| |||| |||||||||| ||||||| |||||||||  |||||||||| | ||||       |||||| ||||| |||| ||||||     
T  1243253 aaaattaacggttgaagtagcttataaatatgaaatgacataaaaaatgtgcatttaattagtatttatttttttcaattaggattgcaggggtaaaatg 1243154  T
Q  204 gaaataaaaagtgacaagctataaacttatacaattaacttatcaaaaactgctataaactcatgaaaataagtta 279  Q
    || ||||||||||| || |||||||||  |  ||||||||||||| ||||| |||||  |||||||||||||||||    
T  1243153 gagataaaaagtgataaactataaactacttgaattaacttatcagaaacttctatatgctcatgaaaataagtta 1243078  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 167
Target Start/End: Complemental strand, 19087483 - 19087385
Alignment:
Q  72 gaataagttagttgattgattctatagtatttggcaaaattaatggttgatgtagtttataaatataaaatgacgtaaaaaa---tgcatttaattaat 167  Q
    ||||||||||  ||||||| | |||||||||||  |||||||| ||||||  || |||| |||||| ||||||| |||||||   ||||||||||||||    
T  19087483 gaataagttaaatgattgaatttatagtatttgataaaattaacggttgaattaatttaaaaatatgaaatgacataaaaaaatgtgcatttaattaat 19087385  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 151
Target Start/End: Complemental strand, 21261968 - 21261914
Alignment:
Q  97 agtatttggcaaaattaatggttgatgtagtttataaatataaaatgacgtaaaa 151  Q
    ||||||||| ||||||| | ||||| |||| | ||||||||||||||||||||||    
T  21261968 agtatttggtaaaattagttgttgaagtagctgataaatataaaatgacgtaaaa 21261914  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 155
Target Start/End: Original strand, 44235372 - 44235420
Alignment:
Q  107 aaaattaatggttgatgtagtttataaatataaaatgacgtaaaaaatg 155  Q
    |||||||  |||||| ||||||||||||||| ||||||| |||||||||    
T  44235372 aaaattagcggttgaagtagtttataaatatgaaatgacataaaaaatg 44235420  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 73 - 133
Target Start/End: Original strand, 10113039 - 10113099
Alignment:
Q  73 aataagttagttgattgattctatagtatttggcaaaattaatggttgatgtagtttataa 133  Q
    ||||||||||||||||||||||||||||||||  ||||||| |||||||  ||||||||||    
T  10113039 aataagttagttgattgattctatagtatttgataaaattagtggttgaactagtttataa 10113099  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 279
Target Start/End: Original strand, 13895983 - 13896026
Alignment:
Q  236 aattaacttatcaaaaactgctataaactcatgaaaataagtta 279  Q
    ||||||||||||||||||  ||||||||||||||||||||||||    
T  13895983 aattaacttatcaaaaacaactataaactcatgaaaataagtta 13896026  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 12525139 - 12525183
Alignment:
Q  180 aattaagattgtagggttaaaattgaaataaaaagtgacaagcta 224  Q
    |||||||||||||||| ||||||||| ||||||||||| ||||||    
T  12525139 aattaagattgtaggggtaaaattgagataaaaagtgataagcta 12525183  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 12367553 - 12367509
Alignment:
Q  179 caattaagattgtagggttaaaattgaaataaaaagtgacaagct 223  Q
    ||||||| ||||||||| ||||||||| ||| |||||||||||||    
T  12367553 caattaaaattgtagggataaaattgagatataaagtgacaagct 12367509  T

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Target: scaffold0040 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 67 - 276
Target Start/End: Original strand, 49753 - 49965
Alignment:
Q  67 atagtgaataagttagttgattgattctatagtatttggcaaaattaatggttgatgtagtttataaatataaaatgacgtaaaaaat--gcatttaatt 164  Q
    |||||| ||||  ||||||||||  | | |||||||||| ||||||| ||| |||  ||||| |||||||| ||||||| | ||||||  || |||||||    
T  49753 atagtggataaactagttgattggatttgtagtatttggtaaaattagtggctgacttagttgataaatatgaaatgacatgaaaaatttgcttttaatt 49852  T
Q  165 aat-tttannnnnnncaattaagattgtagggttaaaattgaaataaaaagtgacaagctataaacttatacaattaacttatcaaaaactgctataaac 263  Q
     || ||||       |||||||||||| | || ||||||||| ||||||||||| ||||||||| ||  |  ||||| ||||||| |||| ||||||| |    
T  49853 gatatttatttttttcaattaagattgcaagggtaaaattgagataaaaagtgataagctataagctacttgaattagcttatcacaaaccgctataagc 49952  T
Q  264 tcatgaaaataag 276  Q
    || | ||||||||    
T  49953 tcttaaaaataag 49965  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 118 - 276
Target Start/End: Complemental strand, 52831623 - 52831466
Alignment:
Q  118 ttgatgtagtttataaatataaaatgacgtaaaaaatg--catttaattaattttannnnnnncaattaagattgtagggttaaaattgaaataaaaagt 215  Q
    |||| |||| |||||||||| ||||| | |||||||||  |||||||||||||||        |||||||||||| |||| | ||||||| ||||||| |    
T  52831623 ttgaagtagcttataaatatgaaatggcataaaaaatgtgcatttaattaatttt---ttttccaattaagattgcaggggtcaaattgagataaaaaat 52831527  T
Q  216 gacaagctataaacttatacaattaacttatcaaaaactgctataaactcatgaaaataag 276  Q
    || ||||||||| ||  |  ||||| ||||||||||||   ||||| ||||||||||||||    
T  52831526 gataagctataagctacttgaattagcttatcaaaaacctttataagctcatgaaaataag 52831466  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 276
Target Start/End: Original strand, 24418208 - 24418304
Alignment:
Q  180 aattaagattgtagggttaaaattgaaataaaaagtgacaagctataaacttatacaattaacttatcaaaaactgctataaactcatgaaaataag 276  Q
    ||||||||||| |||| ||||||  | ||||||| ||| ||||||||| ||  |  ||||| |||||||||||| ||||||| |||| |||||||||    
T  24418208 aattaagattgcaggggtaaaataaagataaaaaatgataagctataagctacttgaattagcttatcaaaaaccgctataagctcaagaaaataag 24418304  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 20435533 - 20435490
Alignment:
Q  187 attgtagggttaaaattgaaataaaaagtgacaagctataaact 230  Q
    ||||||||| ||||||||| ||||||||||||||| ||||||||    
T  20435533 attgtaggggtaaaattgagataaaaagtgacaagttataaact 20435490  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 258
Target Start/End: Original strand, 20988783 - 20988861
Alignment:
Q  180 aattaagattgtagggttaaaattgaaataaaaagtgacaagctataaacttatacaattaacttatcaaaaactgcta 258  Q
    ||||||||||  |||||||||||||| ||||||| ||| ||||||||| ||  |  ||||| ||||||||||| |||||    
T  20988783 aattaagattaaagggttaaaattgagataaaaaatgataagctataagctacttgaattagcttatcaaaaaatgcta 20988861  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 284
Target Start/End: Original strand, 31736111 - 31736215
Alignment:
Q  179 caattaagattgtagggttaaaattgaaataaaaagtgacaagctataaacttatacaattaacttatcaaaaactgctataaactcatgaaaataagtt 278  Q
    |||||||||||| ||||| |||||| | ||||||| | | ||||||||||||  |  ||||| ||||| |||||  | ||||| ||||||||||||||||    
T  31736111 caattaagattggagggt-aaaatttagataaaaaattataagctataaactacttgaattagcttataaaaaatcgttataagctcatgaaaataagtt 31736209  T
Q  279 agaagt 284  Q
    | ||||    
T  31736210 ataagt 31736215  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 276
Target Start/End: Complemental strand, 24474153 - 24474113
Alignment:
Q  236 aattaacttatcaaaaactgctataaactcatgaaaataag 276  Q
    ||||| ||||| |||||| ||||||||||||||||||||||    
T  24474153 aattagcttataaaaaaccgctataaactcatgaaaataag 24474113  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 179 - 231
Target Start/End: Original strand, 13799990 - 13800042
Alignment:
Q  179 caattaagattgtagggttaaaattgaaataaaaagtgacaagctataaactt 231  Q
    |||||||||||| |||| ||||||||| ||||||||||| |||||||||||||    
T  13799990 caattaagattgcaggggtaaaattgagataaaaagtgataagctataaactt 13800042  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 152
Target Start/End: Original strand, 9198039 - 9198117
Alignment:
Q  74 ataagttagttgattgattctatagtatttggcaaaattaatggttgatgtagtttataaatataaaatgacgtaaaaa 152  Q
    ||||||||||||||||| ||| |||| ||||| ||||||| | |||||  |||||| ||||||| ||||||| ||||||    
T  9198039 ataagttagttgattgaatctgtagtgtttggtaaaattagttgttgaactagtttgtaaatatgaaatgacataaaaa 9198117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 276
Target Start/End: Complemental strand, 43822643 - 43822539
Alignment:
Q  179 caattaagattgtagggttaaaattgaaataaaaagtgacaagctataaactt----atac---aattaacttatcaaaaactgctataaactcatgaaa 271  Q
    |||||| ||||| |||| |||||| || ||||||||||||||||||||| |||     |||   ||||| ||||||||||||  |||||| |||||||||    
T  43822643 caattaggattgcaggggtaaaatggagataaaaagtgacaagctataagctttaagctacttgaattagcttatcaaaaaccactataatctcatgaaa 43822544  T
Q  272 ataag 276  Q
    |||||    
T  43822543 ataag 43822539  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 32582562 - 32582514
Alignment:
Q  179 caattaagattgtagggttaaaattgaaataaaaagtgacaagctataa 227  Q
    |||||||||||| | || ||||||||| ||||||||||| |||||||||    
T  32582562 caattaagattgcaagggtaaaattgagataaaaagtgataagctataa 32582514  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 179 - 279
Target Start/End: Original strand, 31117697 - 31117797
Alignment:
Q  179 caattaagattgtagggttaaaattgaaataaaaagtgacaagctataaacttatacaattaacttatcaaaaactgctataaactcatgaaaataagtt 278  Q
    ||||||||||||||||| ||||||||| ||||||| ||| | ||||||| ||  |  ||||| |||||||||||  ||||||| ||||| ||| ||||||    
T  31117697 caattaagattgtaggggtaaaattgagataaaaattgataggctataagctacttgaattatcttatcaaaaaaagctataagctcataaaattaagtt 31117796  T
Q  279 a 279  Q
    |    
T  31117797 a 31117797  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 231
Target Start/End: Original strand, 21516607 - 21516660
Alignment:
Q  179 caattaagattgtagggttaaaattgaaataaaaagtgac-aagctataaactt 231  Q
    ||||||||||||||||| ||||||||| |||| ||||||| |||||||||||||    
T  21516607 caattaagattgtaggggtaaaattgagataagaagtgacaaagctataaactt 21516660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 276
Target Start/End: Complemental strand, 32359289 - 32359193
Alignment:
Q  180 aattaagattgtagggttaaaattgaaataaaaagtgacaagctataaacttatacaattaacttatcaaaaactgctataaactcatgaaaataag 276  Q
    |||||||||||||||| ||||||||| ||||||||||  ||||||||   |  |  ||||| |||||||||||  ||| ||| ||||||||||||||    
T  32359289 aattaagattgtagggataaaattgagataaaaagtgctaagctataggttacttgaattagcttatcaaaaatcgctgtaagctcatgaaaataag 32359193  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 20791924 - 20791967
Alignment:
Q  184 aagattgtagggttaaaattgaaataaaaagtgacaagctataa 227  Q
    |||||||||||| |||||| |||||||||||||||||| |||||    
T  20791924 aagattgtaggggtaaaatggaaataaaaagtgacaagttataa 20791967  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 153
Target Start/End: Original strand, 1714052 - 1714109
Alignment:
Q  96 tagtatttggcaaaattaatggttgatgtagtttataaatataaaatgacgtaaaaaa 153  Q
    |||| ||||| ||||||||  ||||| ||||||||||||||| ||||||| |||||||    
T  1714052 tagtgtttggtaaaattaaccgttgaagtagtttataaatatgaaatgacataaaaaa 1714109  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 279
Target Start/End: Complemental strand, 40910003 - 40909921
Alignment:
Q  197 taaaattgaaataaaaagtgacaagctataaacttatacaattaacttatcaaaaactgctataaactcatgaaaataagtta 279  Q
    ||||||||| ||||||||||| || |||||||||  |  ||||| |||||||||||  | ||||| |||||||||||||||||    
T  40910003 taaaattgagataaaaagtgataacctataaactacttgaattagcttatcaaaaaacgttataagctcatgaaaataagtta 40909921  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 276
Target Start/End: Original strand, 12238601 - 12238641
Alignment:
Q  236 aattaacttatcaaaaactgctataaactcatgaaaataag 276  Q
    ||||| |||||| ||||| ||||||||||||||||||||||    
T  12238601 aattagcttatcgaaaaccgctataaactcatgaaaataag 12238641  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 276
Target Start/End: Complemental strand, 9004930 - 9004832
Alignment:
Q  179 caattaagattgtagggttaaaattgaaataaaaa-gtgacaagctataaacttatacaattaacttatcaaaaactgctataaactcatgaaaataag 276  Q
    |||||||||||| || | ||||||||| ||||||| ||||  |||||||| ||  |  ||||| |||||||||||| | ||||| ||||||||||||||    
T  9004930 caattaagattgcagaggtaaaattgagataaaaaagtgattagctataagctacttgaattagcttatcaaaaaccgatataagctcatgaaaataag 9004832  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 32882836 - 32882792
Alignment:
Q  179 caattaagattgtagggttaaaattgaaataaaaagtgacaagct 223  Q
    |||||||||||| |||| ||||||||| ||||||||||| |||||    
T  32882836 caattaagattgcaggggtaaaattgagataaaaagtgagaagct 32882792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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