View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5734_low_6 (Length: 264)
Name: NF5734_low_6
Description: NF5734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5734_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 4775562 - 4775320
Alignment:
| Q |
1 |
ttgagggggcgtgtaggagtattaacttaagcattgaccaaatcaaagaataatggttgtaataatatctgtaaatggaaatcatatcccatagtaaata |
100 |
Q |
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| T |
4775562 |
ttgagggggcgtgtaggagtattaacttaagcattgaccaaatcaaagaataatggttgtaataatatctgtaaatggaaatcatatcccatagta---- |
4775467 |
T |
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| Q |
101 |
gccaattagtatagttgactgttccatgattttagcataattcatcattgtattatatgtatatatggccacacaaatgttaac---attttctattgac |
197 |
Q |
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| T |
4775466 |
-----------tagttgactgttccatgattttagcataattcatcattgtattatatgtatatatggccacacaaatgttaacattattttctattgac |
4775378 |
T |
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| Q |
198 |
ttgaatataacagaacg---------tatacattgcaggtggctacagaggatagatg |
246 |
Q |
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| T |
4775377 |
ttgaatataacagaacgtatttatcctatacatcgcaggtggctacagaggatagatg |
4775320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 12 - 180
Target Start/End: Complemental strand, 448677 - 448506
Alignment:
| Q |
12 |
tgtaggagtattaacttaa---gcattgaccaaatcaaagaataatggttgtaataatatctgtaaatggaaatcatatcccatagtaaatagccaatta |
108 |
Q |
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| T |
448677 |
tgtaggagtattaacttaattagcattgaccaaatcaaataatgatgggtgtaataatatcagtaaatggaaatcatatcttatagtaactagccaatta |
448578 |
T |
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| Q |
109 |
gtatagttgactgttccatgattttagcataattcatcattgtattatatgtatatatggccacacaaatgt |
180 |
Q |
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| T |
448577 |
gtatagttgactgttccatgatttgagcaatattcatcattgtattccatgtatatatggctacacaaatgt |
448506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 43060920 - 43060836
Alignment:
| Q |
1 |
ttgagggggcgtgtaggagtattaacttaagcattgaccaaatcaaagaataatggttgtaataatatctgtaaatggaaatcat |
85 |
Q |
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| T |
43060920 |
ttgagcgggcgtgtaggagtattaacttaagcatttaccaaatcaaataacaatggttgtaatgatatcagtaaatggaaatcat |
43060836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 154 - 212
Target Start/End: Complemental strand, 43060807 - 43060749
Alignment:
| Q |
154 |
tatatgtatatatggccacacaaatgttaacattttctattgacttgaatataacagaa |
212 |
Q |
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| T |
43060807 |
tatatatatatattaccacacaaatgttaatattttctattgacttgaatacaacagaa |
43060749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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