View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5736-Insertion-2 (Length: 727)

Name: NF5736-Insertion-2
Description: NF5736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5736-Insertion-2
NF5736-Insertion-2
[»] chr5 (1 HSPs)
chr5 (8-727)||(29055311-29056030)


Alignment Details
Target: chr5 (Bit Score: 642; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 642; E-Value: 0
Query Start/End: Original strand, 8 - 727
Target Start/End: Complemental strand, 29056030 - 29055311
Alignment:
Q  8 cagatatggagtaaattggggttggtttgtctttttcaaattttggttttcaacaggtatcttctattggaggcaatcctatttgaggcaaagttgaaca 107  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29056030 cagacatggagtaaattggggttggtttgtctttttcaaattttggttttcaacaggtatcttctattggaggcaatcctatttgaggcaaagttgaaca 29055931  T
Q  108 cttaatgtgagtacctctcccaacggggatctgaaccgtggttcaccatgttatgggtgtccggtttggctttagcaaacaattttgactaatagttaac 207  Q
    || |||||||||||||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29055930 ctaaatgtgagtacctctcccaacggggatctgaaccttggaccaccatgttatgggtgtccggtttggctttagcaaacaattttgactaatagttaac 29055831  T
Q  208 aaaatttt-acttttttccactttatgtcttactttctagaatttatacaaaaatggtgttctattcaagatttaaaattgcactcatgccacgaatctt 306  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29055830 aaaatttttacttttttccactttatgtcttactttctagaatttatacaaaaatggtgttctattcaagatttaaaattgcactcatgccacgaatctt 29055731  T
Q  307 agcattgctgataagtgcaatcaaatgcggtctcaatcgtagacacgaagacatcacaactcttgatatcacagcccagattgtggttgtagaatttctt 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  29055730 agcattgctgataagtgcaatcaaatgcggtctcaatcgtagacacgaagacatcacaactcttgatatcacagcccagattgtggttgcagaatttctt 29055631  T
Q  407 aaaccctagtttaatataagaaactattaaatgtttgaaaactttnnnnnnnnncctctttacaactaccactgaacacaattgaaatggaagtattaat 506  Q
    |||||||||||||||||||||||||||||||||||||||||| ||         ||||||||||||||| ||||||||||||||||||||||||| ||||    
T  29055630 aaaccctagtttaatataagaaactattaaatgtttgaaaac-ttaaaaaaaaacctctttacaactacaactgaacacaattgaaatggaagtactaat 29055532  T
Q  507 catatgatatgtattcaaaaactcattacataattaccacttctgtaagaggcatgaaacgactataccaatctttgtcttgcttaattgtagcttttaa 606  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29055531 catatgatatgtattcaaaaactcattacataattaccacttctgtaagaggcatgaaacgactataccaatctttgtcttgcttaattgtagcttttaa 29055432  T
Q  607 atcaccctgcaaagtgtcagcactctgaagaagagacaaaacagcatttgcctcatagccagttaccagtatggttctccgtgcactttgaattgcagtt 706  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29055431 atcaccctgcaaagtgtcagcactctgaagaagagataaaacagcatttgcctcatagccagttaccagtatggttctccgtgcactttgaattgcagtt 29055332  T
Q  707 tgcacctacagaaaccataaa 727  Q
    |||||||||||||||||||||    
T  29055331 tgcacctacagaaaccataaa 29055311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University