View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5736_high_1 (Length: 453)

Name: NF5736_high_1
Description: NF5736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5736_high_1
NF5736_high_1
[»] chr3 (14 HSPs)
chr3 (235-434)||(6942439-6942638)
chr3 (282-434)||(6788085-6788237)
chr3 (370-434)||(6939399-6939463)
chr3 (171-249)||(6788244-6788326)
chr3 (219-340)||(8466898-8467021)
chr3 (107-170)||(6256529-6256592)
chr3 (114-170)||(6235354-6235410)
chr3 (362-434)||(8467019-8467091)
chr3 (111-170)||(6897399-6897458)
chr3 (108-170)||(6914390-6914452)
chr3 (43-170)||(6166143-6166268)
chr3 (368-404)||(11484345-11484381)
chr3 (111-170)||(6879827-6879886)
chr3 (105-170)||(6263042-6263107)
[»] chr1 (2 HSPs)
chr1 (376-434)||(34564852-34564910)
chr1 (376-436)||(30526203-30526263)
[»] chr5 (3 HSPs)
chr5 (372-434)||(28362672-28362734)
chr5 (379-431)||(1569771-1569823)
chr5 (362-402)||(35052184-35052224)
[»] chr2 (1 HSPs)
chr2 (381-434)||(33720202-33720255)
[»] chr8 (1 HSPs)
chr8 (376-428)||(5354180-5354232)
[»] chr6 (1 HSPs)
chr6 (372-436)||(1782755-1782819)


Alignment Details
Target: chr3 (Bit Score: 144; Significance: 1e-75; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 235 - 434
Target Start/End: Original strand, 6942439 - 6942638
Alignment:
Q  235 aagaaaaagatttaagaggaatgtgacaatttagattggtttccctaccaatgttaacatggtatgttgcccataagtatgttagaacagcaaacccatt 334  Q
    |||||||| ||||||||||||||| ||| |||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||   ||    
T  6942439 aagaaaaacatttaagaggaatgtaacagtttacattggtttccctaccaatgttaacatggcatgttacccataagtatgttagaacagcaaactggtt 6942538  T
Q  335 caaaaaataagagattaaagaaacagtaaacgcaaataatgaacacacgatgtttggtaacgaagttcagccaatattgcttacgtctccgactgcagag 434  Q
    ||||||  || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  6942539 caaaaatcaaaaaattaaagaaacagtaaacgcaaataatgaacacacgatgtttggtaacgaagttcagccaatattgcctacgtctccgactgcagag 6942638  T

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Target: chr3; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 282 - 434
Target Start/End: Complemental strand, 6788237 - 6788085
Alignment:
Q  282 ccaatgttaacatggtatgttgcccataagtatgttagaacagcaaacccattcaaaaaataagagattaaagaaacagtaaacgcaaataatgaacaca 381  Q
    ||||||| ||||||  | ||||||||||||||||||||| |||||||||| ||||||||  || |||| ||||| | |||||||||||||||| ||||||    
T  6788237 ccaatgtgaacatgtcacgttgcccataagtatgttagatcagcaaacccgttcaaaaatcaaaagataaaagacaaagtaaacgcaaataataaacaca 6788138  T
Q  382 cgatgtttggtaacgaagttcagccaatattgcttacgtctccgactgcagag 434  Q
    ||||||||||||||||||||| ||||||||||| ||| |||||||||||||||    
T  6788137 cgatgtttggtaacgaagttcggccaatattgcctacatctccgactgcagag 6788085  T

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Target: chr3; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 370 - 434
Target Start/End: Original strand, 6939399 - 6939463
Alignment:
Q  370 ataatgaacacacgatgtttggtaacgaagttcagccaatattgcttacgtctccgactgcagag 434  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  6939399 ataatgaacacacgatgtttggtaacgaagttcagccaatattgcctacgtctccgactgcagag 6939463  T

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Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 171 - 249
Target Start/End: Complemental strand, 6788326 - 6788244
Alignment:
Q  171 gaaacaagatttgtattgctgaatagagatgattacaa----caaaacaattagagaacaatagagcgaagaaaaagatttaa 249  Q
    ||||||||||||||||| ||| ||||||||||||||||    ||| ||||||||||||||||||| |||||||||||||||||    
T  6788326 gaaacaagatttgtattactggatagagatgattacaatttacaacacaattagagaacaatagatcgaagaaaaagatttaa 6788244  T

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Target: chr3; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 219 - 340
Target Start/End: Original strand, 8466898 - 8467021
Alignment:
Q  219 agagaacaatagagcgaagaaaaagatttaagaggaatgtgacaatttagattggtttccctaccaatgttaacatggtatgttgcccataa--gtatgt 316  Q
    |||||| ||||||| |||||||||||||| || ||||||||||| |||| | ||| |||||| ||||||| ||||| || ||||||| ||||   |||||    
T  8466898 agagaaaaatagagggaagaaaaagatttgagtggaatgtgacagtttaaaatggattcccttccaatgtaaacattgtgtgttgccaataaatatatgt 8466997  T
Q  317 tagaacagcaaacccattcaaaaa 340  Q
    ||||||||||||||  ||||||||    
T  8466998 tagaacagcaaaccagttcaaaaa 8467021  T

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Target: chr3; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 107 - 170
Target Start/End: Original strand, 6256529 - 6256592
Alignment:
Q  107 acatatccaaatgtggggcctacaattgaaccatacatgagttttgtggaagtggaacaaacag 170  Q
    ||||||||||||| |||||||||||||| ||||| |||||| ||||||||||||||||||||||    
T  6256529 acatatccaaatgcggggcctacaattggaccatgcatgagctttgtggaagtggaacaaacag 6256592  T

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Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 114 - 170
Target Start/End: Original strand, 6235354 - 6235410
Alignment:
Q  114 caaatgtggggcctacaattgaaccatacatgagttttgtggaagtggaacaaacag 170  Q
    ||||||||| ||||||||||| ||||| |||||||||||||||||||||| ||||||    
T  6235354 caaatgtggagcctacaattggaccatgcatgagttttgtggaagtggaataaacag 6235410  T

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Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 362 - 434
Target Start/End: Original strand, 8467019 - 8467091
Alignment:
Q  362 aaacgcaaataatgaacacacgatgtttggtaacgaagttcagccaatattgcttacgtctccgactgcagag 434  Q
    |||| ||||||  ||| |||| ||||||||||||||||||| ||||||||||| |||||||||||||| ||||    
T  8467019 aaacacaaatagcgaaaacacaatgtttggtaacgaagttcggccaatattgcctacgtctccgactgtagag 8467091  T

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Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 111 - 170
Target Start/End: Original strand, 6897399 - 6897458
Alignment:
Q  111 atccaaatgtggggcctacaattgaaccatacatgagttttgtggaagtggaacaaacag 170  Q
    |||||||||| | ||||||||||| ||||| |||||| ||||||||||||||| ||||||    
T  6897399 atccaaatgtcgagcctacaattggaccatgcatgagctttgtggaagtggaataaacag 6897458  T

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Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 108 - 170
Target Start/End: Original strand, 6914390 - 6914452
Alignment:
Q  108 catatccaaatgtggggcctacaattgaaccatacatgagttttgtggaagtggaacaaacag 170  Q
    |||||||||||| || |||||||||| |||||  |||| |||||||||| |||||||||||||    
T  6914390 catatccaaatggggtgcctacaattaaaccaagcatgtgttttgtggatgtggaacaaacag 6914452  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 43 - 170
Target Start/End: Original strand, 6166143 - 6166268
Alignment:
Q  43 gaagattatatggtgaattatatcacaaaaaattaaattataagcgcatcaagcttcagcacccacatatccaaatgtggggcctacaattgaaccatac 142  Q
    |||||||||||||||||| | || | ||| ||||| || ||  || || |||||  ||||| | ||| |||||||||||| ||||| ||||| ||||| |    
T  6166143 gaagattatatggtgaatgaaattaaaaagaattacatcat--gcacaacaagccacagcatcgacacatccaaatgtggagcctaaaattggaccatgc 6166240  T
Q  143 atgagttttgtggaagtggaacaaacag 170  Q
    ||||| ||| ||||||||||| ||||||    
T  6166241 atgagctttctggaagtggaataaacag 6166268  T

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Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 368 - 404
Target Start/End: Original strand, 11484345 - 11484381
Alignment:
Q  368 aaataatgaacacacgatgtttggtaacgaagttcag 404  Q
    |||||||||||||||||||||||||||| ||||||||    
T  11484345 aaataatgaacacacgatgtttggtaacaaagttcag 11484381  T

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Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 170
Target Start/End: Original strand, 6879827 - 6879886
Alignment:
Q  111 atccaaatgtggggcctacaattgaaccatacatgagttttgtggaagtggaacaaacag 170  Q
    |||||||||  | ||||||||||| ||||| |||||| ||||||||||||||| ||||||    
T  6879827 atccaaatgacgagcctacaattggaccatgcatgagctttgtggaagtggaataaacag 6879886  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 170
Target Start/End: Original strand, 6263042 - 6263107
Alignment:
Q  105 ccacatatccaaatgtggggcctacaattgaaccatacatgagttttgtggaagtggaacaaacag 170  Q
    ||||| ||||||| ||||||||| ||| || ||||| ||| |  ||||||||||||||||||||||    
T  6263042 ccacacatccaaacgtggggcctgcaactggaccatgcatcaactttgtggaagtggaacaaacag 6263107  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 376 - 434
Target Start/End: Complemental strand, 34564910 - 34564852
Alignment:
Q  376 aacacacgatgtttggtaacgaagttcagccaatattgcttacgtctccgactgcagag 434  Q
    ||||||||||||||||||||||||||| |||||  |||| |||||||||||||| ||||    
T  34564910 aacacacgatgtttggtaacgaagttcggccaaatttgcctacgtctccgactgtagag 34564852  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 436
Target Start/End: Original strand, 30526203 - 30526263
Alignment:
Q  376 aacacacgatgtttggtaacgaagttcagccaatattgcttacgtctccgactgcagagtg 436  Q
    ||||||||||||||||||||||||||   |||||  ||| ||||||||| ||| |||||||    
T  30526203 aacacacgatgtttggtaacgaagtttgaccaattgtgcctacgtctccaactacagagtg 30526263  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 372 - 434
Target Start/End: Complemental strand, 28362734 - 28362672
Alignment:
Q  372 aatgaacacacgatgtttggtaacgaagttcagccaatattgcttacgtctccgactgcagag 434  Q
    |||||||||||||||||||||||| ||||| | ||||| |||| || ||||| ||||||||||    
T  28362734 aatgaacacacgatgtttggtaacaaagtttaaccaattttgcctatgtctcagactgcagag 28362672  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 431
Target Start/End: Complemental strand, 1569823 - 1569771
Alignment:
Q  379 acacgatgtttggtaacgaagttcagccaatattgcttacgtctccgactgca 431  Q
    |||| |||| ||| |||||||||||| |||| |||| ||||||||||||||||    
T  1569823 acacaatgtctggaaacgaagttcagacaattttgcctacgtctccgactgca 1569771  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 402
Target Start/End: Complemental strand, 35052224 - 35052184
Alignment:
Q  362 aaacgcaaataatgaacacacgatgtttggtaacgaagttc 402  Q
    ||||||||| |||||||||||| |||||||||| |||||||    
T  35052224 aaacgcaaacaatgaacacacgttgtttggtaatgaagttc 35052184  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 381 - 434
Target Start/End: Complemental strand, 33720255 - 33720202
Alignment:
Q  381 acgatgtttggtaacgaagttcagccaatattgcttacgtctccgactgcagag 434  Q
    |||||||||| ||||||||||| |||||| |||| ||| |||||||||||||||    
T  33720255 acgatgtttgataacgaagttcggccaattttgcctacatctccgactgcagag 33720202  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 428
Target Start/End: Original strand, 5354180 - 5354232
Alignment:
Q  376 aacacacgatgtttggtaacgaagttcagccaatattgcttacgtctccgact 428  Q
    ||||||| ||||||||||||||||||| |||||| |||| ||| |||| ||||    
T  5354180 aacacacaatgtttggtaacgaagttcggccaattttgcctacttctctgact 5354232  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 436
Target Start/End: Complemental strand, 1782819 - 1782755
Alignment:
Q  372 aatgaacacacgatgtttggtaacgaagttcagccaatattgcttacgtctccgactgcagagtg 436  Q
    |||||||| || ||||||||||| ||||||  |||||| ||||  || |||||||||||||||||    
T  1782819 aatgaacatacaatgtttggtaatgaagtttggccaattttgccaacctctccgactgcagagtg 1782755  T

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