View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5736_high_13 (Length: 269)

Name: NF5736_high_13
Description: NF5736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5736_high_13
NF5736_high_13
[»] chr2 (3 HSPs)
chr2 (19-263)||(4243040-4243270)
chr2 (110-231)||(647269-647389)
chr2 (120-257)||(42703923-42704060)
[»] chr5 (7 HSPs)
chr5 (115-255)||(33496284-33496425)
chr5 (110-263)||(42577953-42578106)
chr5 (120-222)||(13093675-13093777)
chr5 (120-222)||(13022151-13022253)
chr5 (143-225)||(23150040-23150122)
chr5 (110-247)||(14277195-14277332)
chr5 (107-237)||(7273756-7273886)
[»] chr3 (7 HSPs)
chr3 (110-263)||(52966044-52966197)
chr3 (110-247)||(51141345-51141482)
chr3 (146-257)||(2500410-2500521)
chr3 (143-257)||(2332410-2332523)
chr3 (122-203)||(24596131-24596212)
chr3 (147-192)||(4755709-4755754)
chr3 (164-257)||(39695228-39695321)
[»] chr1 (9 HSPs)
chr1 (107-247)||(14647356-14647496)
chr1 (107-257)||(12459978-12460128)
chr1 (120-237)||(13189541-13189658)
chr1 (110-247)||(51492973-51493110)
chr1 (118-237)||(20128381-20128500)
chr1 (120-257)||(27644552-27644689)
chr1 (149-223)||(50181614-50181688)
chr1 (157-228)||(27465617-27465688)
chr1 (107-222)||(44138466-44138581)
[»] chr7 (8 HSPs)
chr7 (110-228)||(46598537-46598655)
chr7 (110-228)||(31801220-31801338)
chr7 (110-216)||(512590-512696)
chr7 (143-257)||(12351932-12352046)
chr7 (143-225)||(41146525-41146607)
chr7 (120-222)||(43968796-43968898)
chr7 (107-243)||(18222698-18222834)
chr7 (111-221)||(31402552-31402662)
[»] chr6 (3 HSPs)
chr6 (110-247)||(21731033-21731170)
chr6 (107-257)||(16861976-16862126)
chr6 (146-216)||(10160191-10160261)
[»] scaffold0703 (1 HSPs)
scaffold0703 (107-257)||(870-1020)
[»] chr4 (4 HSPs)
chr4 (110-262)||(54422600-54422752)
chr4 (143-225)||(32498317-32498399)
chr4 (110-187)||(29016903-29016980)
chr4 (141-222)||(43732685-43732766)
[»] chr8 (3 HSPs)
chr8 (146-216)||(9181967-9182037)
chr8 (146-216)||(11626236-11626306)
chr8 (117-216)||(29929639-29929738)
[»] scaffold0007 (1 HSPs)
scaffold0007 (146-228)||(189602-189684)
[»] scaffold0010 (1 HSPs)
scaffold0010 (107-255)||(237888-238036)


Alignment Details
Target: chr2 (Bit Score: 165; Significance: 3e-88; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 19 - 263
Target Start/End: Original strand, 4243040 - 4243270
Alignment:
Q  19 atgtactcctaatatctctcaatgctatctgtaactaatgttacacattttattatcgattttatggctttataagattaaactgagttatttccctaga 118  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4243040 atgtactcctaatatctctcagtgctatctgtaactaatgttacacattttattatcgattttatggctttataagattaaactgagttatttccctaga 4243139  T
Q  119 cgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaata 218  Q
    ||||             || |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |    
T  4243140 cggg-------------actgattggtcataatccaagctatacatggaggagtctatggagtactcaatctttgctcactttgggtcatagatggaa-a 4243225  T
Q  219 ttggagatggctcaaaaataaatgtatggaccatgcctttgatac 263  Q
    ||||||||||||| ||||||||| ||||||||||||||| |||||    
T  4243226 ttggagatggctcgaaaataaatctatggaccatgccttggatac 4243270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 231
Target Start/End: Original strand, 647269 - 647389
Alignment:
Q  110 ttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcata 209  Q
    ||||||||||| ||||||||||| || ||  | || || || ||| |||| || ||||||||||||||||||||||||| ||| || || |||||  |||    
T  647269 ttccctagacgagatttcttggaggcccctctgggccacaacccaagctacacttggaggagtctatggagtactcaatctttacttacattgggatata 647368  T
Q  210 gatggaatattggagatggctc 231  Q
    ||||||| ||||| ||||||||    
T  647369 gatggaa-attggtgatggctc 647389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 257
Target Start/End: Complemental strand, 42704060 - 42703923
Alignment:
Q  120 gggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatat 219  Q
    ||||||||||||| |  || ||||| ||||||||| ||| ||| ||||| ||||| |||||||| ||| | ||||| || |||||||||| || ||| ||    
T  42704060 gggatttcttggaggtccctattggccataatccaagctttacttggagaagtctttggagtacccaacacttgcttacattgggtcatatattgaagat 42703961  T
Q  220 tggagatggctcaaaaataaatgtatggaccatgcctt 257  Q
    ||| |||||  | ||||| ||||| |||| ||||||||    
T  42703960 tggtgatggtgccaaaattaatgtgtggaacatgcctt 42703923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 1e-43; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 115 - 255
Target Start/End: Complemental strand, 33496425 - 33496284
Alignment:
Q  115 tagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaa-tatttgctcactttgggtcatagatg 213  Q
    |||| ||||||| ||||| | ||||||||||||||||||| |||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  33496425 tagatgggatttattggacgaaccgattggtcataatccaagctacacatggaggagtccatggagtactcaaatatttgctcactttgggtcatagatg 33496326  T
Q  214 gaatattggagatggctcaaaaataaatgtatggaccatgcc 255  Q
    ||| |||||||||||||| ||||||||| |||| ||||||||    
T  33496325 gaagattggagatggctcgaaaataaatctatgtaccatgcc 33496284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 110 - 263
Target Start/End: Complemental strand, 42578106 - 42577953
Alignment:
Q  110 ttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcata 209  Q
    ||||||||| |||||||||||||||| ||  |||| ||||||||| |||| |||||||||||||| ||||| ||||||| ||| || || ||||||||||    
T  42578106 ttccctagaagggatttcttggatgcccctcttggccataatccaagctacacatggaggagtctttggagcactcaatctttacttaccttgggtcata 42578007  T
Q  210 gatggaatattggagatggctcaaaaataaatgtatggaccatgcctttgatac 263  Q
    ||||||| ||||||||||| ||||| |||||||||||| | ||||||| |||||    
T  42578006 gatggaagattggagatggttcaaacataaatgtatggtctatgccttggatac 42577953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 120 - 222
Target Start/End: Complemental strand, 13093777 - 13093675
Alignment:
Q  120 gggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatat 219  Q
    ||||||||||||||||  |  | |||||||||||| ||| ||| ||||||| ||| |||||||||||| ||||||| ||||||||| |||||||||| ||    
T  13093777 gggatttcttggatgcctccctcggtcataatccaagctttacttggaggaatctttggagtactcaacatttgcttactttgggttatagatggaaaat 13093678  T
Q  220 tgg 222  Q
    |||    
T  13093677 tgg 13093675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 120 - 222
Target Start/End: Complemental strand, 13022253 - 13022151
Alignment:
Q  120 gggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatat 219  Q
    ||||||||||||||||  |  | |||||||||||| ||| ||| ||||||| ||| |||||||||||| |||| || ||||||||| |||||||||| ||    
T  13022253 gggatttcttggatgcctccctcggtcataatccaagctttacttggaggaatctttggagtactcaacattttcttactttgggttatagatggaaaat 13022154  T
Q  220 tgg 222  Q
    |||    
T  13022153 tgg 13022151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 143 - 225
Target Start/End: Original strand, 23150040 - 23150122
Alignment:
Q  143 ggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatattggaga 225  Q
    |||||||||||| | || |||||||||||||||||||||||||||| ||| || || ||||| ||||| ||||| ||||||||    
T  23150040 ggtcataatccaagttacacatggaggagtctatggagtactcaatctttacttaccttgggccataggtggaaaattggaga 23150122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 110 - 247
Target Start/End: Complemental strand, 14277332 - 14277195
Alignment:
Q  110 ttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcata 209  Q
    |||||| | ||||| ||||||||||  ||  |||||||||||||| |||| |   |||||||||| ||||||||||||| | ||   || ||||||||||    
T  14277332 ttcccttgtcgggacttcttggatgtccctcttggtcataatccaagctacatccggaggagtctttggagtactcaatctctgtatacattgggtcata 14277233  T
Q  210 gatggaatattggagatggctcaaaaataaatgtatgg 247  Q
    ||||||| |||||||  || |||||||||||| |||||    
T  14277232 gatggaagattggaggcggttcaaaaataaatttatgg 14277195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 237
Target Start/End: Original strand, 7273756 - 7273886
Alignment:
Q  107 tatttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtc 206  Q
    ||||||||  || ||||||||||||||||  |  | || ||||||||| |||| |||||||| || || |||||||| ||| |||| || || |||||||    
T  7273756 tatttcccacgaagggatttcttggatgcctctctcggccataatccaagctacacatggagaagcctttggagtacacaacatttacttaccttgggtc 7273855  T
Q  207 atagatggaatattggagatggctcaaaaat 237  Q
    || ||||||| ||| ||||||| || |||||    
T  7273856 atggatggaagattagagatggttccaaaat 7273886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 110 - 263
Target Start/End: Complemental strand, 52966197 - 52966044
Alignment:
Q  110 ttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcata 209  Q
    ||||||||| |||||||||||||||| ||  |||| ||||||||| |||| |||||||||||||| ||||| ||||||| ||| || || ||||||||||    
T  52966197 ttccctagaagggatttcttggatgcccctcttggccataatccaagctacacatggaggagtctttggagcactcaatctttacttaccttgggtcata 52966098  T
Q  210 gatggaatattggagatggctcaaaaataaatgtatggaccatgcctttgatac 263  Q
    ||||||| ||||||||||| ||||| |||||||||||| | ||||||| |||||    
T  52966097 gatggaagattggagatggttcaaacataaatgtatggtctatgccttggatac 52966044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 110 - 247
Target Start/End: Complemental strand, 51141482 - 51141345
Alignment:
Q  110 ttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcata 209  Q
    |||||| | ||||| ||||||||||| || ||||||||||||||| | || |||||||| | ||| ||||||||||||||| |||| || ||||||||||    
T  51141482 ttccctcgtcgggacttcttggatgcccctattggtcataatccaagttacacatggagaattctttggagtactcaatatctgcttaccttgggtcata 51141383  T
Q  210 gatggaatattggagatggctcaaaaataaatgtatgg 247  Q
    ||||||| ||||||||||| ||||||||||||||||||    
T  51141382 gatggaagattggagatggttcaaaaataaatgtatgg 51141345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 146 - 257
Target Start/End: Complemental strand, 2500521 - 2500410
Alignment:
Q  146 cataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatattggagatggctcaaaaataaatgtat 245  Q
    ||||||||| | || |||||||||||||||||||||||||||| ||| || || ||||| ||||| ||||| |||||||| |||||  |||| ||||| |    
T  2500521 cataatccaagttacacatggaggagtctatggagtactcaatctttacttaccttgggccataggtggaaaattggagacggctctcaaattaatgtgt 2500422  T
Q  246 ggaccatgcctt 257  Q
    |||  |||||||    
T  2500421 ggagtatgcctt 2500410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 257
Target Start/End: Original strand, 2332410 - 2332523
Alignment:
Q  143 ggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatattggagatggctcaaaaataaatg 242  Q
    |||||||||||| ||||||| ||||||||||| ||||||||| || |||| || || |||  | |||||||||| ||||| |||||||| ||||| ||||    
T  2332410 ggtcataatccaagctatacttggaggagtctttggagtact-aacatttacttaccttgtattatagatggaaaattggtgatggctctaaaattaatg 2332508  T
Q  243 tatggaccatgcctt 257  Q
    | ||||  |||||||    
T  2332509 tgtggaaaatgcctt 2332523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 203
Target Start/End: Complemental strand, 24596212 - 24596131
Alignment:
Q  122 gatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgg 203  Q
    |||||||||||||||||  ||||||| |||||| |||| |||||||||||||| |||||| | |||| ||| || |||||||    
T  24596212 gatttcttggatgcaccttttggtcacaatccaagctacacatggaggagtctttggagtgcccaatctttacttactttgg 24596131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 147 - 192
Target Start/End: Complemental strand, 4755754 - 4755709
Alignment:
Q  147 ataatccatgctatacatggaggagtctatggagtactcaatattt 192  Q
    |||||||| ||||||||||||||||||| |||||||| ||| ||||    
T  4755754 ataatccaagctatacatggaggagtctttggagtacccaaaattt 4755709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 257
Target Start/End: Complemental strand, 39695321 - 39695228
Alignment:
Q  164 tggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatattggagatggctcaaaaataaatgtatggaccatgcctt 257  Q
    ||||||||||| |||||||||||| | |  || | ||||||||||| |||||| ||||| || ||||| ||||| ||||| || | ||||||||    
T  39695321 tggaggagtctttggagtactcaacaatgacttattttgggtcatatatggaagattggtgacggctctaaaattaatgtgtgaaacatgcctt 39695228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 8e-36; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 107 - 247
Target Start/End: Original strand, 14647356 - 14647496
Alignment:
Q  107 tatttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtc 206  Q
    ||||||||| | ||||| ||||||||||||||  ||| |||||||||| |||| | |||||||||||| ||||||||||||| | |||| || |||||||    
T  14647356 tatttccctcgtcgggacttcttggatgcacctcttgatcataatccaagctacatatggaggagtctttggagtactcaatctctgcttaccttgggtc 14647455  T
Q  207 atagatggaatattggagatggctcaaaaataaatgtatgg 247  Q
    |||||||||| ||||||||||| ||||||||||||||||||    
T  14647456 atagatggaaaattggagatggttcaaaaataaatgtatgg 14647496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 107 - 257
Target Start/End: Complemental strand, 12460128 - 12459978
Alignment:
Q  107 tatttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtc 206  Q
    ||||||||| |||||||||||||||| |||||  |||||||||||||| ||||||||||||||||||| |||||||| ||||  || || || |||||      
T  12460128 tatttccctcgacgggatttcttggaagcacctcttggtcataatccaagctatacatggaggagtctttggagtacccaatcattacttacgttgggct 12460029  T
Q  207 atagatggaatattggagatggctcaaaaataaatgtatggaccatgcctt 257  Q
    |||||||||| |||||  ||||||||||||||||||| ||| | |||||||    
T  12460028 atagatggaagattggtaatggctcaaaaataaatgtgtggtcaatgcctt 12459978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 120 - 237
Target Start/End: Complemental strand, 13189658 - 13189541
Alignment:
Q  120 gggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatat 219  Q
    |||| |||||||||||||| ||||| ||||||||| |||| || ||||| ||||| |||||||||||| |||| || || |||||| |||||||||| ||    
T  13189658 gggacttcttggatgcacctattggccataatccaagctacacttggagaagtctttggagtactcaacatttacttaccttgggttatagatggaaaat 13189559  T
Q  220 tggagatggctcaaaaat 237  Q
    |||||||||||| |||||    
T  13189558 tggagatggctctaaaat 13189541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 110 - 247
Target Start/End: Complemental strand, 51493110 - 51492973
Alignment:
Q  110 ttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcata 209  Q
    |||||||||  ||||||||||||||| ||  |||| ||||||||| ||||  |||||||| |||| ||||| ||||||| ||| || || ||||||||||    
T  51493110 ttccctagaatggatttcttggatgcccctcttggccataatccaagctacgcatggaggggtctttggagcactcaatctttacttaccttgggtcata 51493011  T
Q  210 gatggaatattggagatggctcaaaaataaatgtatgg 247  Q
    ||||||| ||||||| ||| ||||| ||||||||||||    
T  51493010 gatggaagattggagctggttcaaacataaatgtatgg 51492973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 118 - 237
Target Start/End: Original strand, 20128381 - 20128500
Alignment:
Q  118 acgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaat 217  Q
    ||||||||||||||| |||||  |||||||||||||| |||| || |||||||||||||||||||| |||| | | || || ||||| |||||||||||     
T  20128381 acgggatttcttggaagcacctcttggtcataatccaagctacacttggaggagtctatggagtacccaatctcttcttaccttgggacatagatggaag 20128480  T
Q  218 attggagatggctcaaaaat 237  Q
    ||||| |||||| |||||||    
T  20128481 attggtgatggcacaaaaat 20128500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 120 - 257
Target Start/End: Complemental strand, 27644689 - 27644552
Alignment:
Q  120 gggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatat 219  Q
    ||||||||||||||||  |  |||||||||||||| ||||||| ||||||||||| |||||||| ||  | ||||| || || || || || ||||| ||    
T  27644689 gggatttcttggatgcctctcttggtcataatccaagctatacttggaggagtctttggagtacccagcacttgcttaccttaggacacaggtggaagat 27644590  T
Q  220 tggagatggctcaaaaataaatgtatggaccatgcctt 257  Q
    |||| |||| || ||||||||||| ||||| |||||||    
T  27644589 tggaaatggttccaaaataaatgtgtggactatgcctt 27644552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 223
Target Start/End: Original strand, 50181614 - 50181688
Alignment:
Q  149 aatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatattgga 223  Q
    |||||| | |||||||||||||||||||||||||| |||| ||| || || || || ||||||||||| ||||||    
T  50181614 aatccaagttatacatggaggagtctatggagtacgcaatctttacttaccttaggccatagatggaagattgga 50181688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 27465617 - 27465688
Alignment:
Q  157 ctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatattggagatgg 228  Q
    |||||| |||| |||||||||||||||||||| ||| || | ||||||||||  |||||| ||||| |||||    
T  27465617 ctatacttggaagagtctatggagtactcaatctttacttattttgggtcatgaatggaaaattggtgatgg 27465688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 222
Target Start/End: Original strand, 44138466 - 44138581
Alignment:
Q  107 tatttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtc 206  Q
    ||||||||  || |||||||||||||||| ||  | || ||||||||| |||| || ||||| || ||||||||| | ||| |||| || || ||||| |    
T  44138466 tatttcccgcgaagggatttcttggatgcccctctcggccataatccaagctacacctggagaagcctatggagtgcacaacatttacttaccttgggac 44138565  T
Q  207 atagatggaatattgg 222  Q
    |||||||||| |||||    
T  44138566 atagatggaagattgg 44138581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 110 - 228
Target Start/End: Original strand, 46598537 - 46598655
Alignment:
Q  110 ttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcata 209  Q
    |||||||||||||| |||||||||||| |  | |||||||||||| ||||||| ||||||||  ||||||||||||||| ||| || |||||||| ||||    
T  46598537 ttccctagacgggacttcttggatgcaaccctcggtcataatccaagctatacctggaggagcttatggagtactcaatctttacttactttgggccata 46598636  T
Q  210 gatggaatattggagatgg 228  Q
    ||||||| |||||||||||    
T  46598637 gatggaagattggagatgg 46598655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 110 - 228
Target Start/End: Original strand, 31801220 - 31801338
Alignment:
Q  110 ttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcata 209  Q
    |||||||||| ||| |||||||||||  |  | |||||||||||| ||||||| ||||||||  ||||||||||||||| ||| || |||||||| ||||    
T  31801220 ttccctagactggacttcttggatgctaccctcggtcataatccaagctatacttggaggagcttatggagtactcaatctttacttactttgggccata 31801319  T
Q  210 gatggaatattggagatgg 228  Q
    ||||||| |||||||||||    
T  31801320 gatggaagattggagatgg 31801338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 110 - 216
Target Start/End: Original strand, 512590 - 512696
Alignment:
Q  110 ttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcata 209  Q
    |||||||||||||| |||||||||||| |  | |||||||||||| ||||||| || |||||  ||||||||||||||| ||| || |||||||| ||||    
T  512590 ttccctagacgggacttcttggatgcaaccctcggtcataatccaagctatacctgaaggagcttatggagtactcaatctttacttactttgggccata 512689  T
Q  210 gatggaa 216  Q
    |||||||    
T  512690 gatggaa 512696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 143 - 257
Target Start/End: Complemental strand, 12352046 - 12351932
Alignment:
Q  143 ggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatattggagatggctcaaaaataaatg 242  Q
    |||||||||||| | || |||||||||||||||||||||||||||| ||| || || ||||| ||||| ||||| |||||||| |||||  |||| ||||    
T  12352046 ggtcataatccaagttacacatggaggagtctatggagtactcaatctttacttaccttgggccatagctggaaaattggagacggctctcaaattaatg 12351947  T
Q  243 tatggaccatgcctt 257  Q
    | ||||  |||||||    
T  12351946 tgtggagtatgcctt 12351932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 143 - 225
Target Start/End: Original strand, 41146525 - 41146607
Alignment:
Q  143 ggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatattggaga 225  Q
    |||||||||||| | || |||||||||||||||||||||||||||| ||| || || ||||| ||||| ||||| ||||||||    
T  41146525 ggtcataatccaagttacacatggaggagtctatggagtactcaatctttacttaccttgggccataggtggaaaattggaga 41146607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 120 - 222
Target Start/End: Original strand, 43968796 - 43968898
Alignment:
Q  120 gggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatat 219  Q
    ||||||||||||||||  |  | |||||||||||| ||| ||| || |||||||| |||||||||||| ||||||| ||||||||| ||| |||||| ||    
T  43968796 gggatttcttggatgcctccctcggtcataatccaagctttacttgaaggagtctttggagtactcaacatttgcttactttgggttatatatggaaaat 43968895  T
Q  220 tgg 222  Q
    |||    
T  43968896 tgg 43968898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 107 - 243
Target Start/End: Complemental strand, 18222834 - 18222698
Alignment:
Q  107 tatttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtc 206  Q
    ||||||||  || ||||||||||||||||  |  | || ||||||||| ||||||| ||||||||||| ||||||| |||||  || || || ||||| |    
T  18222834 tatttcccgcgaagggatttcttggatgcctctctcggccataatccaagctatacttggaggagtctttggagtattcaatcattacttaccttggggc 18222735  T
Q  207 atagatggaatattggagatggctcaaaaataaatgt 243  Q
    |||||||||| |||||||| ||  | |||||||||||    
T  18222734 atagatggaagattggagacggtactaaaataaatgt 18222698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 221
Target Start/End: Original strand, 31402552 - 31402662
Alignment:
Q  111 tccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatag 210  Q
    |||||||| ||||| ||| |||||||   ||||||||||||||| ||| ||||||||||||  | |||||| | ||| |  |  ||||||||||| ||||    
T  31402552 tccctagaagggatatctcggatgcaaatattggtcataatccaagctttacatggaggagcatttggagttcccaaaaccttatcactttgggttatag 31402651  T
Q  211 atggaatattg 221  Q
    |||||| ||||    
T  31402652 atggaagattg 31402662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 7e-27; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 110 - 247
Target Start/End: Complemental strand, 21731170 - 21731033
Alignment:
Q  110 ttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcata 209  Q
    |||||| | ||||| ||||||||||||||  |||||||||||||| |||| | |||||||||||| ||||||||||||| | | || || ||||| ||||    
T  21731170 ttccctcgtcgggacttcttggatgcacctcttggtcataatccaagctacatatggaggagtctttggagtactcaatctcttcttaccttgggccata 21731071  T
Q  210 gatggaatattggagatggctcaaaaataaatgtatgg 247  Q
    ||||||| ||| |||| || ||||||||||||||||||    
T  21731070 gatggaaaattagagacggttcaaaaataaatgtatgg 21731033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 107 - 257
Target Start/End: Original strand, 16861976 - 16862126
Alignment:
Q  107 tatttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtc 206  Q
    ||||||||| |||||||||||||||| |||||  |||||||||||||| |||| |||||||||||||| |||||||  ||||  || || || |||||      
T  16861976 tatttccctcgacgggatttcttggaagcacctcttggtcataatccaagctacacatggaggagtctttggagtaaccaatcattacttacgttgggct 16862075  T
Q  207 atagatggaatattggagatggctcaaaaataaatgtatggaccatgcctt 257  Q
    |||||||||| |||||  |||| ||||| |||||||| ||| | |||||||    
T  16862076 atagatggaagattggtaatggttcaaatataaatgtgtggccaatgcctt 16862126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 146 - 216
Target Start/End: Complemental strand, 10160261 - 10160191
Alignment:
Q  146 cataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaa 216  Q
    ||||||||| | |||||||||||||||||||||||||| |||| ||| || || |||||||||||||||||    
T  10160261 cataatccaagttatacatggaggagtctatggagtacacaatctttacttaccttgggtcatagatggaa 10160191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0703 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0703
Description:

Target: scaffold0703; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 107 - 257
Target Start/End: Complemental strand, 1020 - 870
Alignment:
Q  107 tatttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtc 206  Q
    ||||||||| |||||||||||||||| |||||  |||||||||||||| ||||||||||||||||||| |||||||  ||||  || || || |||||      
T  1020 tatttccctcgacgggatttcttggaagcacctcttggtcataatccaagctatacatggaggagtctttggagtatccaatcattacttacgttgggct 921  T
Q  207 atagatggaatattggagatggctcaaaaataaatgtatggaccatgcctt 257  Q
    |||||||||| |||||  |||| ||||| |||||||| ||| | |||||||    
T  920 atagatggaagattggtaatggttcaaatataaatgtgtggtcaatgcctt 870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 110 - 262
Target Start/End: Complemental strand, 54422752 - 54422600
Alignment:
Q  110 ttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcata 209  Q
    ||||| || |||||||||||||| ||||   ||||||| |||||| |||| || || ||||||||||||||| | |||| | |||| || ||||| ||||    
T  54422752 ttcccgaggcgggatttcttggaagcacgtcttggtcacaatccaagctacacttgaaggagtctatggagtgcccaatctctgcttaccttggggcata 54422653  T
Q  210 gatggaatattggagatggctcaaaaataaatgtatggaccatgcctttgata 262  Q
    ||||||| || || |||||||||||||| ||| | ||||  ||||||| ||||    
T  54422652 gatggaagatcggtgatggctcaaaaattaatatgtggagtatgccttggata 54422600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 143 - 225
Target Start/End: Original strand, 32498317 - 32498399
Alignment:
Q  143 ggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatattggaga 225  Q
    |||||||||||| | || |||||||||||||||||||||||||||| ||| || || ||||| ||||| ||||| ||||||||    
T  32498317 ggtcataatccaagttacacatggaggagtctatggagtactcaatctttacttaccttgggccataggtggaaaattggaga 32498399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 187
Target Start/End: Original strand, 29016903 - 29016980
Alignment:
Q  110 ttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaa 187  Q
    ||||||||| |||||||||||||| | |  |||||||| |||||| ||||||| ||||||||  |||||||| |||||    
T  29016903 ttccctagaagggatttcttggattcccgtattggtcacaatccaagctatacttggaggagcatatggagttctcaa 29016980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 222
Target Start/End: Original strand, 43732685 - 43732766
Alignment:
Q  141 ttggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatattgg 222  Q
    |||||||||||||| |||| || ||||| ||||| |||||| | ||| | ||  | |||||||||||||||||||| |||||    
T  43732685 ttggtcataatccaagctacacttggagaagtctttggagtgcccaacacttagttactttgggtcatagatggaagattgg 43732766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 146 - 216
Target Start/End: Complemental strand, 9182037 - 9181967
Alignment:
Q  146 cataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaa 216  Q
    ||||||||| | |||||||||||||||||||||||||| |||| ||| || || |||||||||||||||||    
T  9182037 cataatccaagttatacatggaggagtctatggagtacacaatctttacttaccttgggtcatagatggaa 9181967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 146 - 216
Target Start/End: Original strand, 11626236 - 11626306
Alignment:
Q  146 cataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaa 216  Q
    ||||||||| | |||||||||||||||||||||||||| |||| ||| || || |||||||||||||||||    
T  11626236 cataatccaagttatacatggaggagtctatggagtacacaatctttacttaccttgggtcatagatggaa 11626306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 216
Target Start/End: Complemental strand, 29929738 - 29929639
Alignment:
Q  117 gacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaa 216  Q
    |||||||||||||||| |  ||  |||||||||||||| || | || || |||||||| |||||||   || | ||||| ||||||||||||||||||||    
T  29929738 gacgggatttcttggacgaccctcttggtcataatccaagcaacacttgcaggagtctttggagtatctaacacttgcttactttgggtcatagatggaa 29929639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 228
Target Start/End: Complemental strand, 189684 - 189602
Alignment:
Q  146 cataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatattggagatgg 228  Q
    ||||||||| | | ||||||||||||||| | ||||||||||| ||| ||||| ||||| ||||||||||  ||||| |||||    
T  189684 cataatccaagttttacatggaggagtcttttgagtactcaatctttactcaccttgggacatagatggatgattggtgatgg 189602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 255
Target Start/End: Complemental strand, 238036 - 237888
Alignment:
Q  107 tatttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtc 206  Q
    ||||||||| | |||||||||||||||||    ||||| || |||||| |||  || ||||||||  |||||||| |||||| | | || || |||||      
T  238036 tatttccctcgtcgggatttcttggatgccaatattggccacaatccaagcttcacttggaggagcatatggagttctcaatctcttctaaccttgggct 237937  T
Q  207 atagatggaatattggagatggctcaaaaataaatgtatggaccatgcc 255  Q
    |||||||||| ||||| || || || ||||| ||||| ||| |||||||    
T  237936 atagatggaagattggtgacggttcgaaaatcaatgtttggtccatgcc 237888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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