View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5736_high_19 (Length: 237)
Name: NF5736_high_19
Description: NF5736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5736_high_19 |
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Alignment Details
Target: chr8 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 104 - 223
Target Start/End: Original strand, 9281890 - 9282009
Alignment:
| Q |
104 |
tgaaaaacatccttattgtatacgaggaagactctgataaagctattagtcttcgcaaatcatagatatattgcagcaggaatgttcctgacattttaaa |
203 |
Q |
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||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9281890 |
tgaaaaacatccttattctgtacgaggaagactctggtaaagctattagtcttcgcaaatcatagatatattgcagcaggaatgttcctgacattttaaa |
9281989 |
T |
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| Q |
204 |
gacctccatcacatatattt |
223 |
Q |
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||| |||||||||||||||| |
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| T |
9281990 |
gacttccatcacatatattt |
9282009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 9281283 - 9281389
Alignment:
| Q |
1 |
cttatccacaaagattcctttccctttcacccagaaaattgttttatttttaaggaacgcataaaattattagataacgaaaaaatggaaggaaaaatat |
100 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
9281283 |
cttatccacaaagattcctttccctttcacgcagaaaattgttttatttttaaggaacgcataaaataattagataacgaaaaaatgaaaggaaaaatat |
9281382 |
T |
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| Q |
101 |
aattgaa |
107 |
Q |
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||||||| |
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| T |
9281383 |
aattgaa |
9281389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 216
Target Start/End: Original strand, 22955644 - 22955756
Alignment:
| Q |
104 |
tgaaaaacatccttattgtatacgaggaagactctgataaagctattagtcttcgcaaatcatagatatattgcagcaggaatgttcctgacattttaaa |
203 |
Q |
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||||||||||||||| ||| || ||| || |||| | ||| ||||| ||| | ||||||||| || |||||||| ||||||||||||| | |||||| |
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| T |
22955644 |
tgaaaaacatccttactgtgtataaggcagcctctagtcaagatattattctccccaaatcatatatgtattgcagtaggaatgttcctgtgactttaaa |
22955743 |
T |
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| Q |
204 |
gacctccatcaca |
216 |
Q |
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||| ||||||||| |
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| T |
22955744 |
gacttccatcaca |
22955756 |
T |
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