View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5736_high_2 (Length: 437)
Name: NF5736_high_2
Description: NF5736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5736_high_2 |
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| [»] scaffold0245 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 403; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 13 - 419
Target Start/End: Original strand, 1310013 - 1310419
Alignment:
| Q |
13 |
aatataacttatctgcaagaactaaccataccgtaaaaacttcctgatatccaggaaactcgacccttgagctagaagaccttaacataatagaccgatc |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1310013 |
aatataacttatctgcaagaactaaccataccgtaaaaacttcctgatatccaggaaactcgacccttgagctagaagaccttaacataatagaccgatc |
1310112 |
T |
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| Q |
113 |
aacatttccaaactcaacttgtatctggaatcggaaagacattaggaaacatatctggtcagccataataatatcagatagaagcatgtgaactttaaaa |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
1310113 |
aacatttccaaactcaacttgtatctggaatcggaaagacattaggaaacatatctggtcagccataataatatcagatcgaagcatgtgaactttaaaa |
1310212 |
T |
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| Q |
213 |
gaacacaaattatatttcaagatcatatattatgttaatgatatttatttaggacagacacaatctaacaaaagtagacctggaaagatggttaggaaaa |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1310213 |
gaacacaaattatatttcaagatcatatattatgttaatgatatttatttaggacagacacaatctaacaaaagtagacctggaaagatggttaggaaaa |
1310312 |
T |
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| Q |
313 |
atgaatttaccgagaaacagtttttcccttttttaaaccaaggttccatacaacaaaggaaattgatcactacaaagatgagtgaaagaaagataaaaat |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1310313 |
atgaatttaccgagaaacagtttttcccttttttaaaccaaggttccatacaacaaaggaaattgatcactacaaagatgagtgaaagaaagataaaaat |
1310412 |
T |
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| Q |
413 |
atgacct |
419 |
Q |
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| T |
1310413 |
atgacct |
1310419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 13 - 211
Target Start/End: Original strand, 1290376 - 1290574
Alignment:
| Q |
13 |
aatataacttatctgcaagaactaaccataccgtaaaaacttcctgatatccaggaaactcgacccttgagctagaagaccttaacataatagaccgatc |
112 |
Q |
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|||||||||||||||||| |||||||||||||||||| ||| || | |||||||||||||||||||| ||||||| |||||| |||| ||||||| |||| |
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| T |
1290376 |
aatataacttatctgcaaaaactaaccataccgtaaacactgcccggtatccaggaaactcgaccctcgagctagcagacctcaacacaatagactgatc |
1290475 |
T |
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| Q |
113 |
aacatttccaaactcaacttgtatctggaatcggaaagacattaggaaacatatctggtcagccataataatatcagatagaagcatgtgaactttaaa |
211 |
Q |
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| T |
1290476 |
agcatttccaacatcaagttgtatctggaatcagaaagacatcaggaaacatatttggtcaagaataataacatcaaattgaagcacgtgaactataaa |
1290574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0245 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: scaffold0245
Description:
Target: scaffold0245; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 13 - 211
Target Start/End: Original strand, 16781 - 16979
Alignment:
| Q |
13 |
aatataacttatctgcaagaactaaccataccgtaaaaacttcctgatatccaggaaactcgacccttgagctagaagaccttaacataatagaccgatc |
112 |
Q |
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|||||||||||||||||| |||||||||||||||||| ||| || | |||||||||||||||||||| ||||||| |||||| |||| ||||||| |||| |
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| T |
16781 |
aatataacttatctgcaaaaactaaccataccgtaaacactgcccggtatccaggaaactcgaccctcgagctagcagacctcaacacaatagactgatc |
16880 |
T |
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| Q |
113 |
aacatttccaaactcaacttgtatctggaatcggaaagacattaggaaacatatctggtcagccataataatatcagatagaagcatgtgaactttaaa |
211 |
Q |
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| T |
16881 |
agcatttccaacatcaagttgtatctggaatcagaaagacatcaggaaacatatttggtcaagaataataacatcaaattgaagcacgtgaactataaa |
16979 |
T |
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