View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5736_high_20 (Length: 221)
Name: NF5736_high_20
Description: NF5736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5736_high_20 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 55381799 - 55382021
Alignment:
| Q |
1 |
tgggggaaggacgagcgagagagggatgattttcttcgtttttaaatacatatccttaaataataaaatttaaaaacaatccc--acaatttgttttaaa |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
55381799 |
tgggggaaggacgagcgagagagggatgattttcttcgtttttaaatacatatccttaaataataaaatttaaaaacaatcccccacaatttgttttaaa |
55381898 |
T |
|
| Q |
99 |
gtcaaagaaatatgtttctaacaacttaataaatcaatgcataaacaattatgtcttttagacgacaaactagcatgagacaaatgagctatgatcccta |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55381899 |
gtcaaagaaatatgtttctaacaacttaataaatcaatgcataaacaattatgtcttttagacgacaaactagcatgagacaaatgagctatgatcccta |
55381998 |
T |
|
| Q |
199 |
aaaatatcaatgaggttatgacc |
221 |
Q |
| |
|
||||||||||| ||||||||||| |
|
|
| T |
55381999 |
aaaatatcaattaggttatgacc |
55382021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University