View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5736_high_21 (Length: 213)
Name: NF5736_high_21
Description: NF5736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5736_high_21 |
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Alignment Details
Target: chr2 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 7 - 182
Target Start/End: Original strand, 40135624 - 40135799
Alignment:
| Q |
7 |
atcaacatgtaattttttctttgattatgtgttaaataaaattgtgacttatatcaacaattcaaattttgttttgccttgtcaaattaatataatcttc |
106 |
Q |
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| T |
40135624 |
atcaatatgtgattttttctttgattatgtgttaaataaaattgtgacttatatcaacaattcaaattttgttttgccttgtcaaattagtataatcttc |
40135723 |
T |
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| Q |
107 |
taactaaggtcttctcatggctaagcttatgatttagtatactcaccaaaattnnnnnnntagagcatgttatgag |
182 |
Q |
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| T |
40135724 |
taactaaggtcttctcatggctaagcttatgatttagtatactcaccaaaattcaaaaaatagagcatgttatgag |
40135799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 7 - 159
Target Start/End: Complemental strand, 40135130 - 40134978
Alignment:
| Q |
7 |
atcaacatgtaattttttctttgattatgtgttaaataaaattgtgacttatatcaacaattcaaattttgttttgccttgtcaaattaatataatcttc |
106 |
Q |
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|||||||||| | |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
40135130 |
atcaacatgtgaattttgctttgattatgtgttaaataaaattgtgacttatatcagcaattcaaattttgttttgccttgtcaaattagtatattcttc |
40135031 |
T |
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| Q |
107 |
taactaaggtcttctcatggctaagcttatgatttagtatactcaccaaaatt |
159 |
Q |
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| T |
40135030 |
taactaaggtcttctcatggctaagcttatgatttagtatactcaccaaaatt |
40134978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 10 - 139
Target Start/End: Complemental strand, 54280173 - 54280047
Alignment:
| Q |
10 |
aacatgtaattttttctttgattatgtgttaaataaaattgtgacttatatcaacaattcaaattttgttttgccttgtcaaattaa-----tataatct |
104 |
Q |
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||||||| |||||| | ||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||| || |||||||| |
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| T |
54280173 |
aacatgtgatttttgcgttgattatgtgttaaataaaattgtta--------aacaattcaaattttgtgttgccttgtcaaatcaaattagtataatct |
54280082 |
T |
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| Q |
105 |
tctaactaaggtcttctcatggctaagcttatgat |
139 |
Q |
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||||||||||| ||||||| |||||||| |||| |
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| T |
54280081 |
tctaactaaggagttctcatttctaagcttgtgat |
54280047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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