View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5736_high_3 (Length: 378)
Name: NF5736_high_3
Description: NF5736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5736_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 55382012 - 55382373
Alignment:
| Q |
1 |
ggttatgacctctatagacataccagtagcaaacagattagaaaggccagggaaatattgctttgtgataaacgaaacaatagccataaatacaagaaga |
100 |
Q |
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| T |
55382012 |
ggttatgacctctatagacataccagtagcaaacagattagaaaggccagggaaatattgctttgtgataaacgaaacaatagccataaatacaagaaga |
55382111 |
T |
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| Q |
101 |
atgaaaatcattttctataatggtacagtaatagcattcactagcatcttcaagctaattaaagacgtgttctatccattgttccaacacatcaggggaa |
200 |
Q |
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| T |
55382112 |
atgaaaatcattttctataatggtacagtaatagcattcactagcatcttcaagctaattaaagaggtgttctatccattgttccaacacatcaggggaa |
55382211 |
T |
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| Q |
201 |
ccataccatggtctaatgagatcatctgaaccaaccggggagtggtaaactccatccagggaaatgttaagtgcaccgtcaagatgagctgatacttctg |
300 |
Q |
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| T |
55382212 |
ccataccatggtctaatgagatcatctgaaccaaccggggagtggtaaactccatccagggaaatgttaagtgcaccgtcaagatgagctgatacttctg |
55382311 |
T |
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| Q |
301 |
gcacaacaccatcgccccatacatctgcttgcccacaaacctgagaaattattattagaact |
362 |
Q |
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| T |
55382312 |
gcacaacaccatcgccccatacatctgcttgcccacaaacctgagaaattattattagaact |
55382373 |
T |
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