View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5736_low_12 (Length: 270)
Name: NF5736_low_12
Description: NF5736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5736_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 16 - 252
Target Start/End: Original strand, 38719474 - 38719710
Alignment:
| Q |
16 |
attaaaataaataacagcacaattttcaaagtattaataaattatattccttaaaattcaaacaatataatgaaatggtctaagaggcattcattcatca |
115 |
Q |
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| T |
38719474 |
attaaaataaataacagcacaattttcaaagtattaataaattatattccttaaaattcaaacaatataatgaaatggtctaagaggcattcattcatta |
38719573 |
T |
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| Q |
116 |
ccacaaactaaagaaaaggcaagacaaattcaacgacagaaaatataacaaacaaaagcaacaacgtttggtagccccgaaactaacattctaaaaaaca |
215 |
Q |
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| T |
38719574 |
ccacaaactaaagaaaagacaagacaaattcaacgacagaaaatataacaaacaaaagcaacaacgtttggtagccccgaaactaacattctaaaaaaca |
38719673 |
T |
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| Q |
216 |
aaggtggctaagaccaaagcaaccccaacaccaacag |
252 |
Q |
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| T |
38719674 |
aaggaggctaagaccaaagcaaccccaacaccaacag |
38719710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 251
Target Start/End: Complemental strand, 52798887 - 52798831
Alignment:
| Q |
195 |
aaactaacattctaaaaaacaaaggtggctaagaccaaagcaaccccaacaccaaca |
251 |
Q |
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|||| ||||||||||||| ||||||| ||||||||||||| ||| |||||| |||| |
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| T |
52798887 |
aaacgaacattctaaaaagcaaaggttcctaagaccaaagccaccacaacactaaca |
52798831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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