View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5736_low_15 (Length: 250)
Name: NF5736_low_15
Description: NF5736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5736_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 2 - 243
Target Start/End: Original strand, 31899720 - 31899965
Alignment:
| Q |
2 |
ataattacatattctaataattaattagtactatatgctgctggtctttgtttgttaattttgcagcctaaggataaactttataaacctgacaagaaca |
101 |
Q |
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| T |
31899720 |
ataattacatattctaataattaattagtactatatgctgctgatctttgtttgttaattttgcagcctaaggataaactttataaacctgacaagaaca |
31899819 |
T |
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| Q |
102 |
aatttgtgaactataggacgcccttgtgtgatgtcgtccagaaaaaacgaaagagtgagtcattgccatgtgagtttcaaaaagaatatgtagac----t |
197 |
Q |
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| T |
31899820 |
aatttgtgaactatgggacgcctttgtgtgatacagtccagaaaaaacgaaagagtgagtcattgccatgtgagtttcaaaaagaatatgtagactcggt |
31899919 |
T |
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| Q |
198 |
ctcttcaagctgatggatacctagtaaaatacagtattctgtgatc |
243 |
Q |
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| T |
31899920 |
ctcttcaagatgatggatacctagtaaaagacagtattctgggatc |
31899965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 112; Significance: 1e-56; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 886231 - 886445
Alignment:
| Q |
19 |
taattaattagtactatatgctgctggtctttgtttgttaattttgcagcctaaggataaactttataaacctgacaagaacaaatttgtgaactatagg |
118 |
Q |
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| T |
886231 |
taattaattagtactatatgcttat---ctttgtttgttaattttgcagcctaaggataaactttataaacctgacaaaaacaaatttgtgaaatatggg |
886327 |
T |
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| Q |
119 |
acgcccttgtgtgatgtcgtccagaaaaaacgaaagagtgagtcattgccatgtgagtttcaaaaagaatatgtagactctcttcaagctgatggatacc |
218 |
Q |
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| T |
886328 |
acgcccttgtgtgatgcagtccagaaaaaaaataaaaatgagtcagtgctatgtgagtttcaagaagaatatgtagacaatcttcacgttgagggatacc |
886427 |
T |
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| Q |
219 |
tagtaaaatacagtattc |
236 |
Q |
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|| || || ||||||||| |
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| T |
886428 |
taatagaagacagtattc |
886445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 85
Target Start/End: Original strand, 31660267 - 31660348
Alignment:
| Q |
2 |
ataattacat-attctaataattaattagtactatatgctgctggtctttgtttgttaattttgcagcctaaggataaactttat |
85 |
Q |
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|||||||||| | ||||||||||||||||||||||||| || | ||||||| ||||||||||||||||| ||||||||||||| |
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| T |
31660267 |
ataattacattaatctaataattaattagtactatatgttgat---ctttgttggttaattttgcagcctagggataaactttat |
31660348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 85
Target Start/End: Complemental strand, 31936119 - 31936038
Alignment:
| Q |
2 |
ataattacat-attctaataattaattagtactatatgctgctggtctttgtttgttaattttgcagcctaaggataaactttat |
85 |
Q |
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| T |
31936119 |
ataattacattaatctaataattaattagtactatatgttgat---ctttgttggttaattttgcagcctagggataaactttat |
31936038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 89
Target Start/End: Complemental strand, 31876238 - 31876164
Alignment:
| Q |
12 |
attctaataattaattagtactatatgctgctggtctttgtttgttaattttgcagcctaaggataaactttataaac |
89 |
Q |
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| T |
31876238 |
attctaataattaactagtactatatgctgat---ctttgttggttaattttgcaggataagtataaactttataaac |
31876164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 85
Target Start/End: Complemental strand, 31974444 - 31974363
Alignment:
| Q |
2 |
ataattacat-attctaataattaattagtactatatgctgctggtctttgtttgttaattttgcagcctaaggataaactttat |
85 |
Q |
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| T |
31974444 |
ataattacattaatctaataattaattagtactatatattgat---ctttgttggttaattttgcagcctagggataaactttat |
31974363 |
T |
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