View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5736_low_18 (Length: 238)
Name: NF5736_low_18
Description: NF5736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5736_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 19 - 222
Target Start/End: Original strand, 51825400 - 51825593
Alignment:
| Q |
19 |
ctgtaataaaagaacaagattgtgtgtgaatcattatgaaattgaatcttttgttgcacacaagcaatgtggcaaaccaaaaatagttaattgagttcac |
118 |
Q |
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| T |
51825400 |
ctgtaataaaagaacaagattgtgtgtgaatcattatgaaattgaatcttttgttgcacacaagcaatgtggcaaaccaaaaatagttaattgagttcac |
51825499 |
T |
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| Q |
119 |
tattaattaaatgaagaagcacaaaaacataccttggacttggagacaaaaaatccacaggtgtaacgttttttggtgtcgcgtttgtgggaaataagtc |
218 |
Q |
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| T |
51825500 |
t----attaaatgaagaagcacaaaaacatac------cttggagacaaagaatccacaggtgtaacgttttttggtgtcacgtttgtgggaaataagtc |
51825589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 222
Target Start/End: Original strand, 51828404 - 51828469
Alignment:
| Q |
157 |
cttggagacaaaaaatccacaggtgtaacgttttttggtgtcgcgtttgtgggaaataagtccatg |
222 |
Q |
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| T |
51828404 |
cttggaaagaaaaaatccatagttgtaaggtttttcggggtcacgtttgtgggaaataaatccatg |
51828469 |
T |
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