View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5736_low_6 (Length: 305)
Name: NF5736_low_6
Description: NF5736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5736_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 173 - 235
Target Start/End: Original strand, 53391601 - 53391663
Alignment:
| Q |
173 |
gcctaaagtacacaacaatatgttcactagtaagttcaatcagcacaacaccaaaaccatgaa |
235 |
Q |
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| T |
53391601 |
gcctaaagtacacaacaatatgtccactaataagttcaattagcacaaccccaaaaccatgaa |
53391663 |
T |
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Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 174 - 235
Target Start/End: Original strand, 1895908 - 1895968
Alignment:
| Q |
174 |
cctaaagtacacaacaatatgttcactagtaagttcaatcagcacaacaccaaaaccatgaa |
235 |
Q |
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| T |
1895908 |
cctaaagtaca-aacaatatgttcactagtaagttcaatcagcacaagactaaaaccatgaa |
1895968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 1895830 - 1895884
Alignment:
| Q |
5 |
attatgtgttatacctgttctctgatgtttattatgtttgttatttctgtttgga |
59 |
Q |
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| T |
1895830 |
attatgtgttatacctgttctctgatttgtattatgtttgttattgctgtttgga |
1895884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 5 - 155
Target Start/End: Original strand, 43080174 - 43080322
Alignment:
| Q |
5 |
attatgtgttatacctgttctctgatgtttattatgtttgttatttctgtttggaatgtatgtatttggttggacagggatgaagtgaatatttatagtt |
104 |
Q |
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| T |
43080174 |
attatttgttatacttgttctctgatttttatt---tttgtttttgctgcttggaatgtttcgatttcgtttgtcagggatgaagtgaatatttttagtt |
43080270 |
T |
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| Q |
105 |
caagaattt-tttggtctgaaatatatcatgctggttgagttattgtgtttt |
155 |
Q |
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| T |
43080271 |
caagaatttgtttagtctgtagtatatcatgtctgttgattgattgtgtttt |
43080322 |
T |
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