View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5738-Insertion-11 (Length: 256)
Name: NF5738-Insertion-11
Description: NF5738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5738-Insertion-11 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 8 - 256
Target Start/End: Complemental strand, 15926275 - 15926026
Alignment:
| Q |
8 |
tagcctacaagttatatatgaccagactcttgtagtatttttaaaattcgtacttatgaaagttttaccatgtaccgttacacttatacctttaccccga |
107 |
Q |
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| T |
15926275 |
tagcctacaagttatatatgaccagactcttatagtatttttaaaattcatacttatgaaagttttaccatgtaccgttacacttatacctttaccccga |
15926176 |
T |
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| Q |
108 |
caaatgatataccattccaattttatcccattctcatttgacttcaccagcacaaattatatcaa-aaaactttagttgagttttctagaatagaattag |
206 |
Q |
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| T |
15926175 |
caaatgatataccattccaattttatcccattctcatttgacttcaccagcacaaattatatcaaaaaaactttagttgagttttctagaatagaattag |
15926076 |
T |
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| Q |
207 |
tggtcacacttcggtgtctctcttccaactccataacataacacctaatt |
256 |
Q |
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| T |
15926075 |
tggtcacacttcggtctctctcttccaactccataacataacacctaatt |
15926026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 8 - 256
Target Start/End: Original strand, 8266657 - 8266908
Alignment:
| Q |
8 |
tagcctacaagttatatatgaccagactcttgtagtatttttaaaattcgtacttatgaaagttttaccatgtaccgttacacttatacctttaccccga |
107 |
Q |
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| T |
8266657 |
tagcctgcaagttgtatatgaccaggctcttgtagtatttttagaattcatacttatgaaagttttaccacgtacccttacacttataccgctactccga |
8266756 |
T |
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| Q |
108 |
caaatgatataccattccaattttatcccattctcatttgacttcaccagcacaaattatatcaaaaaactttagttgagttttctagaatagaattagt |
207 |
Q |
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| T |
8266757 |
caaatgatttaccattccaattttatcccattctcatttgacttcaccaccacaaattatatcaaaaaactttagttgaatttttgagaatagaattagt |
8266856 |
T |
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| Q |
208 |
ggtcacacttcggtgtctctcttccaactccat---aacataacacctaatt |
256 |
Q |
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| T |
8266857 |
ggtcacacttctgtctccctcttccaactccattccaacacaacacctaatt |
8266908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 20 - 184
Target Start/End: Complemental strand, 12066502 - 12066338
Alignment:
| Q |
20 |
tatatatgaccagactcttgtagtatttttaaaattcgtacttatgaaagttttaccatgtaccgttacacttatacctttaccccgacaaatgatatac |
119 |
Q |
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| T |
12066502 |
tatatatgaccaggctcttgtattaatttttgaattcgtatttatgaaagttttaccacgtacccttatagttatacctttaccgcgatacatgatatac |
12066403 |
T |
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| Q |
120 |
cattccaattttatcccattctcatttgacttcaccagcacaaattatatcaaaaaactttagtt |
184 |
Q |
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| T |
12066402 |
cattggaattttatcctattcccatttgacttcaccactacaaattatatcatatatctttagtt |
12066338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 86 - 145
Target Start/End: Original strand, 20070134 - 20070193
Alignment:
| Q |
86 |
tacacttatacctttaccccgacaaatgatataccattccaattttatcccattctcatt |
145 |
Q |
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| T |
20070134 |
tacacttatacatttacccctacaaataatatacaattccaattttatccctttctcatt |
20070193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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