View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5738-Insertion-3 (Length: 904)

Name: NF5738-Insertion-3
Description: NF5738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5738-Insertion-3
NF5738-Insertion-3
[»] chr3 (34 HSPs)
chr3 (8-874)||(23696640-23697502)
chr3 (8-874)||(23715097-23715958)
chr3 (8-874)||(23733553-23734414)
chr3 (8-497)||(23752008-23752501)
chr3 (378-693)||(85753-86075)
chr3 (494-847)||(23753707-23754055)
chr3 (435-565)||(10104782-10104912)
chr3 (435-564)||(10225560-10225688)
chr3 (371-631)||(45926768-45927035)
chr3 (435-635)||(44041864-44042064)
chr3 (438-565)||(46749319-46749445)
chr3 (435-564)||(10215931-10216059)
chr3 (377-638)||(44701547-44701810)
chr3 (712-847)||(24150410-24150544)
chr3 (712-834)||(30589214-30589336)
chr3 (712-847)||(19551740-19551873)
chr3 (716-847)||(26293146-26293276)
chr3 (385-484)||(10104984-10105086)
chr3 (712-834)||(26005448-26005570)
chr3 (435-509)||(12103347-12103421)
chr3 (385-484)||(10225760-10225862)
chr3 (712-853)||(50900007-50900145)
chr3 (372-417)||(26006023-26006068)
chr3 (372-417)||(26555813-26555858)
chr3 (372-417)||(36055047-36055092)
chr3 (377-417)||(26293607-26293647)
chr3 (712-748)||(36054678-36054714)
chr3 (377-417)||(38682430-38682470)
chr3 (377-416)||(10067725-10067764)
chr3 (568-634)||(27593350-27593416)
chr3 (528-634)||(38629620-38629726)
chr3 (379-417)||(52024240-52024278)
chr3 (372-417)||(13662547-13662592)
chr3 (715-772)||(38629454-38629509)
[»] chr8 (34 HSPs)
chr8 (372-690)||(43488905-43489227)
chr8 (372-688)||(42366049-42366361)
chr8 (372-638)||(39038939-39039206)
chr8 (372-580)||(17790435-17790645)
chr8 (712-834)||(29259864-29259986)
chr8 (474-665)||(10127630-10127824)
chr8 (712-776)||(40264930-40264992)
chr8 (435-638)||(14061611-14061814)
chr8 (435-638)||(24317976-24318184)
chr8 (712-776)||(41965450-41965512)
chr8 (712-776)||(43605017-43605079)
chr8 (712-775)||(41386517-41386578)
chr8 (712-775)||(41965230-41965291)
chr8 (528-634)||(8502790-8502896)
chr8 (712-776)||(9457885-9457947)
chr8 (369-417)||(43605404-43605452)
chr8 (371-489)||(9209034-9209155)
chr8 (372-417)||(1606053-1606098)
chr8 (727-847)||(10795948-10796067)
chr8 (372-417)||(30382714-30382759)
chr8 (517-634)||(37567192-37567309)
chr8 (377-417)||(2112795-2112835)
chr8 (518-634)||(2112939-2113055)
chr8 (712-776)||(2113169-2113231)
chr8 (377-417)||(7148050-7148090)
chr8 (377-417)||(28619847-28619887)
chr8 (712-776)||(43489258-43489320)
chr8 (712-775)||(7148413-7148474)
chr8 (372-419)||(10802809-10802856)
chr8 (715-748)||(4655421-4655454)
chr8 (372-417)||(29260316-29260361)
chr8 (517-634)||(30382494-30382611)
chr8 (372-417)||(40265321-40265366)
chr8 (372-417)||(42274971-42275016)
[»] chr4 (32 HSPs)
chr4 (372-693)||(56397442-56397767)
chr4 (435-693)||(42314964-42315223)
chr4 (435-638)||(28100398-28100601)
chr4 (372-679)||(38230771-38231082)
chr4 (435-638)||(37370703-37370906)
chr4 (369-638)||(41761975-41762246)
chr4 (377-638)||(53271913-53272177)
chr4 (378-631)||(53594091-53594347)
chr4 (712-834)||(42218033-42218155)
chr4 (372-638)||(44646720-44646980)
chr4 (712-775)||(44930253-44930314)
chr4 (712-775)||(56397782-56397843)
chr4 (461-511)||(20539023-20539073)
chr4 (716-847)||(3435550-3435680)
chr4 (435-563)||(27529144-27529272)
chr4 (712-847)||(7820423-7820557)
chr4 (712-847)||(8583585-8583719)
chr4 (371-419)||(8584043-8584091)
chr4 (377-502)||(28847054-28847182)
chr4 (528-634)||(33449999-33450105)
chr4 (371-417)||(54509712-54509758)
chr4 (449-502)||(543940-543993)
chr4 (372-417)||(25935785-25935830)
chr4 (372-417)||(35261614-35261659)
chr4 (435-507)||(1848474-1848546)
chr4 (377-417)||(26336081-26336121)
chr4 (712-834)||(42315246-42315368)
chr4 (568-634)||(26336266-26336332)
chr4 (528-634)||(42720877-42720983)
chr4 (372-417)||(40143775-40143820)
chr4 (372-417)||(42218444-42218489)
chr4 (372-417)||(45332665-45332710)
[»] chr7 (24 HSPs)
chr7 (372-693)||(12253152-12253476)
chr7 (372-852)||(33474517-33475000)
chr7 (435-638)||(46037166-46037369)
chr7 (377-638)||(42678009-42678274)
chr7 (435-659)||(37042358-37042582)
chr7 (712-776)||(152230-152292)
chr7 (377-632)||(34115295-34115553)
chr7 (372-635)||(37649515-37649779)
chr7 (712-776)||(43057324-43057386)
chr7 (712-847)||(47913907-47914041)
chr7 (519-638)||(3634353-3634472)
chr7 (456-543)||(21067020-21067107)
chr7 (435-561)||(9598958-9599084)
chr7 (435-561)||(9826529-9826655)
chr7 (372-417)||(151857-151902)
chr7 (372-417)||(40097093-40097138)
chr7 (712-748)||(30111180-30111216)
chr7 (712-833)||(12253007-12253128)
chr7 (587-638)||(32630915-32630966)
chr7 (435-502)||(41060050-41060117)
chr7 (712-741)||(27418323-27418352)
chr7 (384-417)||(27418682-27418715)
chr7 (384-417)||(43057721-43057754)
chr7 (372-417)||(47915097-47915142)
[»] chr2 (25 HSPs)
chr2 (372-693)||(21736365-21736690)
chr2 (371-693)||(7487890-7488215)
chr2 (392-693)||(35172398-35172704)
chr2 (435-688)||(36598233-36598486)
chr2 (473-638)||(14920439-14920604)
chr2 (377-654)||(16146823-16147108)
chr2 (388-654)||(16155425-16155694)
chr2 (372-546)||(2288460-2288634)
chr2 (712-847)||(29941324-29941458)
chr2 (377-638)||(18176285-18176549)
chr2 (377-489)||(3858151-3858266)
chr2 (712-776)||(6289156-6289218)
chr2 (517-634)||(34028752-34028869)
chr2 (528-634)||(24193306-24193412)
chr2 (372-417)||(11534834-11534879)
chr2 (517-634)||(11534982-11535099)
chr2 (372-417)||(20157797-20157842)
chr2 (377-417)||(29940949-29940989)
chr2 (712-775)||(7487805-7487866)
chr2 (378-417)||(11998457-11998496)
chr2 (528-634)||(11998237-11998343)
chr2 (372-417)||(6289539-6289584)
chr2 (478-579)||(10441497-10441598)
chr2 (372-421)||(14920617-14920666)
chr2 (435-484)||(43022570-43022619)
[»] chr5 (17 HSPs)
chr5 (371-693)||(3604214-3604539)
chr5 (386-679)||(378245-378543)
chr5 (377-638)||(2276021-2276285)
chr5 (435-638)||(28594257-28594461)
chr5 (435-565)||(26806465-26806595)
chr5 (435-565)||(26795401-26795531)
chr5 (461-638)||(27786295-27786471)
chr5 (385-484)||(26795603-26795705)
chr5 (385-484)||(26806667-26806769)
chr5 (712-847)||(40410968-40411102)
chr5 (712-776)||(13950445-13950507)
chr5 (712-775)||(3604119-3604180)
chr5 (435-546)||(39753500-39753611)
chr5 (444-635)||(40460398-40460587)
chr5 (517-634)||(6828612-6828729)
chr5 (372-417)||(6828832-6828877)
chr5 (372-417)||(40410589-40410634)
[»] chr1 (30 HSPs)
chr1 (15-360)||(44194146-44194480)
chr1 (39-360)||(44308091-44308409)
chr1 (15-309)||(44315192-44315480)
chr1 (377-693)||(39757985-39758295)
chr1 (377-693)||(39763339-39763649)
chr1 (15-307)||(44300637-44300914)
chr1 (372-679)||(48194589-48194900)
chr1 (377-638)||(19007396-19007659)
chr1 (372-659)||(48203347-48203638)
chr1 (432-638)||(4288995-4289201)
chr1 (444-688)||(43553610-43553853)
chr1 (712-847)||(45318840-45318974)
chr1 (712-870)||(45535130-45535287)
chr1 (435-638)||(27198336-27198539)
chr1 (369-634)||(1928224-1928492)
chr1 (517-634)||(36402394-36402511)
chr1 (369-484)||(10896796-10896914)
chr1 (716-847)||(26882400-26882530)
chr1 (712-847)||(52705764-52705898)
chr1 (377-579)||(14555186-14555391)
chr1 (372-417)||(26882866-26882911)
chr1 (372-417)||(36402246-36402291)
chr1 (372-417)||(45318459-45318504)
chr1 (377-417)||(9831303-9831343)
chr1 (377-417)||(29208759-29208799)
chr1 (377-632)||(33243132-33243390)
chr1 (377-632)||(33263305-33263563)
chr1 (528-634)||(29208913-29209019)
chr1 (435-493)||(52179652-52179710)
chr1 (377-418)||(34772315-34772356)
[»] chr6 (10 HSPs)
chr6 (372-679)||(7100163-7100474)
chr6 (372-679)||(8794156-8794467)
chr6 (372-638)||(5957125-5957397)
chr6 (435-638)||(708980-709182)
chr6 (712-776)||(29865398-29865460)
chr6 (440-493)||(4653368-4653421)
chr6 (440-489)||(10009603-10009652)
chr6 (372-417)||(30877851-30877896)
chr6 (712-748)||(6476386-6476422)
chr6 (568-634)||(30878050-30878116)
[»] scaffold0472 (1 HSPs)
scaffold0472 (461-638)||(1701-1878)
[»] scaffold0153 (1 HSPs)
scaffold0153 (715-847)||(34391-34522)
[»] scaffold0016 (3 HSPs)
scaffold0016 (715-847)||(81359-81490)
scaffold0016 (518-634)||(81602-81718)
scaffold0016 (372-417)||(81822-81867)
[»] scaffold0287 (1 HSPs)
scaffold0287 (519-638)||(11613-11732)
[»] scaffold0237 (1 HSPs)
scaffold0237 (712-776)||(21093-21155)


Alignment Details
Target: chr3 (Bit Score: 598; Significance: 0; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 8 - 874
Target Start/End: Original strand, 23696640 - 23697502
Alignment:
Q  8 gaaccgtcgcaaagtaaggaaactagtggtactcctcctcctcctaaatcaagaagtgttgcatttgctgcaaatggtgattgagaaattagaatcaaac 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23696640 gaaccgtcgcaaagtaaggaaactagtggtactcctcctcctcctaaatcaagaagtgttgcatttgctgcaaatggtgattgagaaattagaatcaaac 23696739  T
Q  108 caaggaacatggaacaaattgttaaagaattcannnnnnnnnnnnnnnnnnaattagggttccttggtttgaggaagagtgtgtttggtttcataggtgt 207  Q
    |||||||||||||||||||||||||||||||||                  |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  23696740 caaggaacatggaacaaattgttaaagaattcattttttttttttttttttaattagggttccttggtttgaggaagagtgtgtttggtttcacaggtgt 23696839  T
Q  208 tggggtgttttatagtaaaggaaattctaatttagggtaattaacatatttttagcaaatcacagcgattgtgatgcttgggaaatggtgatccaataat 307  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23696840 tggggtgttttatagtaaatgaaattctaatttagggtaattaacatatttttagcaaatcacagcgattgtgatgcttgggaaatggtgatccaataat 23696939  T
Q  308 ctagatttcccttcaatggggttcgctggaaaattgaacacttgtgtcatttttctctttattaggggcgtattgaattgagatttcaaaggattttaat 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||| ||||||||| ||||||||    
T  23696940 ctagatttcccttcaatggggttcgctggaaaattgaacacttgtgtcattttcctctttattatgggtgtattgaattgaaatttcaaagaattttaat 23697039  T
Q  408 agacttttttatgaaaagaaaatttt---ttattgaatcaagacttttattgaatctaaataaatcatgtggtattcaatcaagacaattaagac--ttt 502  Q
    ||||||||||||||||||||||| ||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||    
T  23697040 agacttttttatgaaaagaaaatcttgagttattgaatcaagacttttattgaatctaaataaatcatgtggtattcaatcaagacaattaagacttttt 23697139  T
Q  503 cttttcaagacatcaaaatccatttgtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattca 602  Q
     |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23697140 tttttcaagacatcaaaatccgtttgtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattca 23697239  T
Q  603 tttgtgtaatggattgtgtgagactttttagtt-aaatacactcatccaacaatctcaaacaaactctttagattttgtaatactcttccaannnnnnnn 701  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||            
T  23697240 tttgtgtaatggattgtgtgagactttttagttaaaatacactcatccaacaatctcaaacaaactctttagattttgtaacactcttccaaattttttt 23697339  T
Q  702 nnnnnnnnnatacgtttcttccaaattcttttctgttctattgtaaccaatgggcaggttatatattttgtttggttattgtccaaaatcatcatacctc 801  Q
             ||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||| ||||    
T  23697340 tatttttttatacgtttcttccaaattcttttatgttctattgtaa-caat-ggcaggttatatattttgtttggttattgt-caaaatcatcatgcctc 23697436  T
Q  802 taaccttgccacttttctaaccataacttttacctttcattaaaaacaaaaacgaacgtactggataatattg 874  Q
    ||| |||| ||||||||| | ||||||||||| | ||||||||    ||||| |||||||||| |||||||||    
T  23697437 taa-cttg-cacttttcttaacataactttta-cgttcattaa----aaaaaagaacgtactgtataatattg 23697502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 8 - 874
Target Start/End: Original strand, 23715097 - 23715958
Alignment:
Q  8 gaaccgtcgcaaagtaaggaaactagtggtactcctcctcctcct---aaatcaagaagtgttgcatttgctgcaaatggtgattgagaaattagaatca 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23715097 gaaccgtcgcaaagtaaggaaactagtggtactcctcctcctcctcctaaatcaagaagtgttgcatttgctgcaaatggtgattgagaaattagaatca 23715196  T
Q  105 aaccaaggaacatggaacaaattgttaaagaattcannnnnnnnnnnnnnnnnnaattagggttccttggtttgaggaagagtgtgtttggtttcatagg 204  Q
    ||||||||||||||||||||||||||||||||||||                  ||||||||||||||||||||||||||||||||||||||||||||||    
T  23715197 aaccaaggaacatggaacaaattgttaaagaattcatttattttttttt-----aattagggttccttggtttgaggaagagtgtgtttggtttcatagg 23715291  T
Q  205 tgttggggtgttttatagtaaaggaaattctaatttagggtaattaacatatttttagcaaatcacagcgattgtgatgcttgggaaatggtgatccaat 304  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23715292 tgttggggtgttttatagtaaatgaaattctaatttagggtaattaacatatttttagcaaatcacagcgattgtgatgcttgggaaatggtgatccaat 23715391  T
Q  305 aatctagatttcccttcaatggggttcgctggaaaattgaacacttgtgtcatttttctctttattaggggcgtattgaattgagatttcaaaggatttt 404  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||| ||||||||| |||||    
T  23715392 aatctagatttcccttcaatggggttcgctggaaaattgaacacttgtgtcattttcctctttattatgggtgtattgaattgaaatttcaaagaatttt 23715491  T
Q  405 aatagacttttttatgaaaagaaaatttt---ttattgaatcaagacttttattgaatctaaataaatcatgtggtattcaatcaagacaattaagac-- 499  Q
    |||||||||||||||||||||||||| ||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  23715492 aatagacttttttatgaaaagaaaatcttgagttattgaatcaagacttttattgaatctaaataaatcatgtggtattcaatcaagacaattaagactt 23715591  T
Q  500 -tttcttttcaagacatcaaaatccatttgtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatgga 598  Q
     ||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23715592 tttttttttcaagacatcaaaatccgtttgcattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatgga 23715691  T
Q  599 ttcatttgtgtaatggattgtgtgagactttttagtt-aaatacactcatccaacaatctcaaacaaactctttagattttgtaatactcttccaannnn 697  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||        
T  23715692 ttcatttgtgtaatggattgtgtgagactttttagttaaaatacactcatccaacaatctcaaacaaactctttagattttgtaacactcttccaaaaaa 23715791  T
Q  698 nnnnnnnnnnnnnatacgtttcttccaaattcttttctgttctattgtaaccaatgggcaggttatatattttgtttggttattgtccaaaatcatcata 797  Q
                 ||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||     
T  23715792 aatttatttttttatacgtttcttccaaattcttttatgttctattgtaa-caat-ggcaggttatatattttgtttggttattgt-caaaatcatcatg 23715888  T
Q  798 cctctaaccttgccacttttctaaccataacttttacctttcattaaaaacaaaaacgaacgtactggataatattg 874  Q
    ||||||| |||| ||||||||| | ||||||||||| | ||||||||    ||||| |||||||||| |||||||||    
T  23715889 cctctaa-cttg-cacttttcttaacataactttta-cgttcattaa----aaaaaagaacgtactgtataatattg 23715958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 8 - 874
Target Start/End: Original strand, 23733553 - 23734414
Alignment:
Q  8 gaaccgtcgcaaagtaaggaaactagtggtactcctcctcctcct---aaatcaagaagtgttgcatttgctgcaaatggtgattgagaaattagaatca 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23733553 gaaccgtcgcaaagtaaggaaactagtggtactcctcctcctcctcctaaatcaagaagtgttgcatttgctgcaaatggtgattgagaaattagaatca 23733652  T
Q  105 aaccaaggaacatggaacaaattgttaaagaattcannnnnnnnnnnnnnnnnnaattagggttccttggtttgaggaagagtgtgtttggtttcatagg 204  Q
    ||||||||||||||||||||||||||||||||||||                  ||||||||||||||||||||||||||||||||||||||||||||||    
T  23733653 aaccaaggaacatggaacaaattgttaaagaattcatttattttttttt-----aattagggttccttggtttgaggaagagtgtgtttggtttcatagg 23733747  T
Q  205 tgttggggtgttttatagtaaaggaaattctaatttagggtaattaacatatttttagcaaatcacagcgattgtgatgcttgggaaatggtgatccaat 304  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23733748 tgttggggtgttttatagtaaatgaaattctaatttagggtaattaacatatttttagcaaatcacagcgattgtgatgcttgggaaatggtgatccaat 23733847  T
Q  305 aatctagatttcccttcaatggggttcgctggaaaattgaacacttgtgtcatttttctctttattaggggcgtattgaattgagatttcaaaggatttt 404  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||| ||||||||| |||||    
T  23733848 aatctagatttcccttcaatggggttcgctggaaaattgaacacttgtgtcattttcctctttattatgggtgtattgaattgaaatttcaaagaatttt 23733947  T
Q  405 aatagacttttttatgaaaagaaaatttt---ttattgaatcaagacttttattgaatctaaataaatcatgtggtattcaatcaagacaattaagac-- 499  Q
    |||||||||||||||||||||||||| ||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  23733948 aatagacttttttatgaaaagaaaatcttgagttattgaatcaagacttttattgaatctaaataaatcatgtggtattcaatcaagacaattaagactt 23734047  T
Q  500 -tttcttttcaagacatcaaaatccatttgtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatgga 598  Q
     ||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23734048 tttttttttcaagacatcaaaatccgtttgcattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatgga 23734147  T
Q  599 ttcatttgtgtaatggattgtgtgagactttttagtt-aaatacactcatccaacaatctcaaacaaactctttagattttgtaatactcttccaannnn 697  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||        
T  23734148 ttcatttgtgtaatggattgtgtgagactttttagttaaaatacactcatccaacaatctcaaacaaactctttagattttgtaacactcttccaaaaaa 23734247  T
Q  698 nnnnnnnnnnnnnatacgtttcttccaaattcttttctgttctattgtaaccaatgggcaggttatatattttgtttggttattgtccaaaatcatcata 797  Q
                 ||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||     
T  23734248 aatttatttttttatacgtttcttccaaattcttttatgttctattgtaa-caat-ggcaggttatatattttgtttggttattgt-caaaatcatcatg 23734344  T
Q  798 cctctaaccttgccacttttctaaccataacttttacctttcattaaaaacaaaaacgaacgtactggataatattg 874  Q
    ||||||| |||| ||||||||| | ||||||||||| | ||||||||    ||||| |||||||||| |||||||||    
T  23734345 cctctaa-cttg-cacttttcttaacataactttta-cgttcattaa----aaaaaagaacgtactgtataatattg 23734414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 8 - 497
Target Start/End: Original strand, 23752008 - 23752501
Alignment:
Q  8 gaaccgtcgcaaagtaaggaaactagtggtactcctcctcctcct---aaatcaagaagtgttgcatttgctgcaaatggtgattgagaaattagaatca 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23752008 gaaccgtcgcaaagtaaggaaactagtggtactcctcctcctcctcctaaatcaagaagtgttgcatttgctgcaaatggtgattgagaaattagaatca 23752107  T
Q  105 aaccaaggaacatggaacaaattgttaaagaattcannnnnnnnnnnnnnnnnnaattagggttccttggtttgaggaagagtgtgtttggtttcatagg 204  Q
    ||||||||||||||||||||||||||||||||||||                  ||||||||||||||||||||||||||||||||||||||||||||||    
T  23752108 aaccaaggaacatggaacaaattgttaaagaattcatttttttttattttttt-aattagggttccttggtttgaggaagagtgtgtttggtttcatagg 23752206  T
Q  205 tgttggggtgttttatagtaaaggaaattctaatttagggtaattaacatatttttagcaaatcacagcgattgtgatgcttgggaaatggtgatccaat 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23752207 tgttggggtgttttatagtaaaggaaattctaatttagggtaattaacatatttttagcaaatcacagcgattgtgatgcttgggaaatggtgatccaat 23752306  T
Q  305 aatctagatttcccttcaatggggttcgctggaaaattgaacacttgtgtcatttttctctttattaggggcgtattgaattgagatttcaaaggatttt 404  Q
    ||||||| ||||||||  |||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||  |||||    
T  23752307 aatctag-tttcccttacatggggttcgctggaaaattgaacacttgtgtcattttcctctttattatgggtgtattgaattgagatttcaaattatttt 23752405  T
Q  405 aatagacttttttatgaaaagaaaatttt---ttattgaatcaagacttttattgaatctaaataaatcatgtggtattcaatcaagacaattaag 497  Q
    |||||||||||||||||||||||||| ||   |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  23752406 aatagacttttttatgaaaagaaaatcttgagttattgaatcaagacttttattgaatttaaataaatcatgtggtattcaatcaagacaattaag 23752501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 378 - 693
Target Start/End: Original strand, 85753 - 86075
Alignment:
Q  378 tattgaattgagatttcaaaggattttaatagactttttt--atgaaaagaaaattttt---tattgaatcaagacttttattgaatctaaataaatcat 472  Q
    ||||||||||| |||| |||||||||||||||| ||||||  |||||||||| || |||   ||| ||||||||| |||||| ||||||||||||||| |    
T  85753 tattgaattgatattttaaaggattttaatagatttttttttatgaaaagaatatctttatgtatcgaatcaagatttttatggaatctaaataaatctt 85852  T
Q  473 gtggtattcaatcaagacaattaagactttctttt-caagacatcaaaatccatttgtattcaattaagatttctaagaacttataaaatgtctcgtggt 571  Q
    ||| |||||||||||||||||||||| ||| |||| |||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||    
T  85853 gtgatattcaatcaagacaattaagattttttttttcaagacatcaaaatccgttggtattcaattaagatttttaagaacttataaaatgtctcgtggt 85952  T
Q  572 attgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagactttttagtt-aaatacactcatccaacaatctcaaacaaactctt 670  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  85953 attgaaaattagacggattttactggattcatttgtgtaatggattgtgtgagactttttagttaaaatacactcatccaacaatctcacacaaactctt 86052  T
Q  671 tagattttgtaatactcttccaa 693  Q
     ||||||||||||||||||||||    
T  86053 aagattttgtaatactcttccaa 86075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 185; E-Value: 1e-99
Query Start/End: Original strand, 494 - 847
Target Start/End: Original strand, 23753707 - 23754055
Alignment:
Q  494 taagactttcttttcaagacatcaaaatccatttgtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggatttta 593  Q
    ||||||||| |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  23753707 taagacttt-ttttcaagacatcaaaatctgtttgtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaagttagacggatttta 23753805  T
Q  594 atggattcatttgtgtaatggattgtgtgagactttttagtt-aaatacactcatccaacaatctcaaacaaactctttagattttgtaatactcttcc- 691  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||     
T  23753806 atggattcatttgtgtaatgaattgtgtgagactttttagttaaaatacactcatccaacaatctcacacaaactctttagattttgtaatactcttcca 23753905  T
Q  692 aannnnnnnnnnnnnnnnnatacgtttcttccaaattcttttctgttctattgtaaccaatgggcaggttatatattttgtttggttattgtccaaaatc 791  Q
    ||                 ||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||| | |||||    
T  23753906 aattcttttttatttttttatacgtttcttccaaattcttttctattctattgtaa-caat-ggcaggttatatattttgtttggttattgt-cgaaatc 23754002  T
Q  792 atcatacctctaaccttgccacttttctaaccataacttttacctttcattaaaaa 847  Q
    ||||| ||||||| |||| ||||||| | | ||||||||||| | |||||||||||    
T  23754003 atcatgcctctaa-cttg-cactttttttaacataactttta-cgttcattaaaaa 23754055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 435 - 565
Target Start/End: Complemental strand, 10104912 - 10104782
Alignment:
Q  435 tattgaatcaagacttttattgaatctaaataaatcatgtggtattcaatcaagacaattaagactttcttttcaagacatcaaaatccatttgtattca 534  Q
    |||| |||||| ||||||||  ||| |||||||||| ||| ||||||||| |||||||| |||||||| |||||||  || | ||||||||| |||||||    
T  10104912 tattcaatcaaaacttttataaaatataaataaatcttgtagtattcaattaagacaatcaagacttttttttcaatgcaacgaaatccattggtattca 10104813  T
Q  535 attaagatttctaagaacttataaaatgtct 565  Q
    |||| ||||||| | ||||||||||||||||    
T  10104812 attaggatttctcacaacttataaaatgtct 10104782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 435 - 564
Target Start/End: Complemental strand, 10225688 - 10225560
Alignment:
Q  435 tattgaatcaagacttttattgaatctaaataaatcatgtggtattcaatcaagacaattaagactttcttttcaagacatcaaaatccatttgtattca 534  Q
    |||| |||||||||||||||  ||| |||||||||| ||| ||||||||| |||||||| |||||||| |||||||  || | ||||||||| |||||||    
T  10225688 tattcaatcaagacttttataaaatataaataaatcttgtagtattcaattaagacaatcaagacttt-ttttcaatgcaacgaaatccattggtattca 10225590  T
Q  535 attaagatttctaagaacttataaaatgtc 564  Q
    |||| ||||||| | |||||||||||||||    
T  10225589 attaggatttctcacaacttataaaatgtc 10225560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 371 - 631
Target Start/End: Complemental strand, 45927035 - 45926768
Alignment:
Q  371 aggggcgtattgaattgagatttcaaaggattttaatagacttttttatgaaaagaaaatttttta-------ttgaatcaagacttttattgaatctaa 463  Q
    ||||| |||||| |||||||||| |||||||||||| ||||||||| || | || ||| | || ||       || ||||||||||| |||  ||| |||    
T  45927035 aggggtgtattggattgagattttaaaggattttaaaagactttttgattataaaaaagtcttgtacgtagtattcaatcaagacttctataaaatataa 45926936  T
Q  464 ataaatcatgtggtattcaatcaagacaattaagactttcttttcaagacatcaaaatccatttgtattcaattaagatttctaagaacttataaaatgt 563  Q
    ||||||| ||||||||||||| |||||||| | ||| || ||||||| ||| | |||||| || ||||||||||| ||||||| | |||||||||||| |    
T  45926935 ataaatcttgtggtattcaattaagacaatcatgacatttttttcaatacaacgaaatccgttggtattcaattaggatttctcacaacttataaaatct 45926836  T
Q  564 ctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagacttttt 631  Q
    |    |||||| |||| | ||  ||||||||||||||| ||| || || | ||| |||||||||||||    
T  45926835 cattcggtattcaaaaattgatagattttaatggattcttttatgcaacgtattttgtgagacttttt 45926768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 435 - 635
Target Start/End: Complemental strand, 44042064 - 44041864
Alignment:
Q  435 tattgaatcaagacttttattgaatctaaataaatcatgtggtattcaatcaagacaattaagactttcttttcaagacatcaaaatccatttgtattca 534  Q
    |||| ||||||||||||||| |||| |||||||||| ||||||||||||| |||||||| |||| | | | |||||| || | |||||   | |||| ||    
T  44042064 tattcaatcaagacttttatagaatataaataaatcttgtggtattcaattaagacaatcaagattgtttgttcaaggcaacgaaatctggtggtatcca 44041965  T
Q  535 attaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagactttttagt 634  Q
    | | |||||||     |||||||||||||||| |||||||||||| ||    ||||||||| ||||| |||||| ||||||||   ||||||||||||||    
T  44041964 aatgagatttccccagacttataaaatgtctcttggtattgaaaagtatgtagattttaatagattcttttgtggaatggatttcatgagactttttagt 44041865  T
Q  635 t 635  Q
    |    
T  44041864 t 44041864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 438 - 565
Target Start/End: Original strand, 46749319 - 46749445
Alignment:
Q  438 tgaatcaagacttttattgaatctaaataaatcatgtggtattcaatcaagacaattaagactttcttttcaagacatcaaaatccatttgtattcaatt 537  Q
    |||||||||||||||||  ||| |||||||||| | ||||||||||| |||||||| |||| ||| |||||||  || | |||||| ||  |||||||||    
T  46749319 tgaatcaagacttttataaaatataaataaatcttatggtattcaattaagacaatcaaga-ttttttttcaatgcaacgaaatccgttgatattcaatt 46749417  T
Q  538 aagatttctaagaacttataaaatgtct 565  Q
    ||||||||| | ||||||||||||||||    
T  46749418 aagatttctcacaacttataaaatgtct 46749445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 435 - 564
Target Start/End: Complemental strand, 10216059 - 10215931
Alignment:
Q  435 tattgaatcaagacttttattgaatctaaataaatcatgtggtattcaatcaagacaattaagactttcttttcaagacatcaaaatccatttgtattca 534  Q
    |||| |||||| ||||||||  ||| |||||||||| ||||||||||||| |||||||  || ||||| |||||||  || | ||||||||| |||||||    
T  10216059 tattcaatcaaaacttttataaaatataaataaatcttgtggtattcaattaagacaagcaaaacttt-ttttcaatgcaacgaaatccattggtattca 10215961  T
Q  535 attaagatttctaagaacttataaaatgtc 564  Q
    |||| ||||||| | |||||||||||||||    
T  10215960 attaggatttctcacaacttataaaatgtc 10215931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 377 - 638
Target Start/End: Original strand, 44701547 - 44701810
Alignment:
Q  377 gtattgaattgagatttcaaaggattttaatagac-ttttttatgaaaagaaaattttt-----tattgaatcaagacttttattgaatctaaataaatc 470  Q
    |||||||||||||| ||||| ||||||||| |||| ||||||||  || |||||| | |     |||| |||||||||||||||  ||| |||| |||||    
T  44701547 gtattgaattgagaattcaagggattttaaaagacattttttat--aatgaaaatgtctagtgatattcaatcaagacttttataaaatgtaaacaaatc 44701644  T
Q  471 atgtggtattcaatcaagacaattaagactttcttttcaagacatcaaaatccatttgtattcaattaagatttctaagaacttataaaatgtctcgtgg 570  Q
     |||||||||||||||| ||||| | |||||  |||| ||| || |||||||  || |||||||||| ||||||||||  | |||| || |||||  |||    
T  44701645 ttgtggtattcaatcaaaacaatcatgactt--tttttaaggcaacaaaatctgttggtattcaattgagatttctaatgatttatgaattgtctattgg 44701742  T
Q  571 tattgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagactttttagttaaa 638  Q
    |||| |||| |  |  |||||| ||||||||||   || |||||||| | ||||||||||||||||||    
T  44701743 tattcaaaagtctatagattttgatggattcatggatggaatggattttatgagactttttagttaaa 44701810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 712 - 847
Target Start/End: Complemental strand, 24150544 - 24150410
Alignment:
Q  712 tacgtttcttccaaattcttttctgttctattgtaaccaatgggcaggttatatattttgtttgg-----ttattgtccaaaatcatcatacctctaacc 806  Q
    |||||||||||||||||||||||||||||| |||||  ||  |||||||||||||||||||||||     ||||||| | |||||||||| ||||||| |    
T  24150544 tacgtttcttccaaattcttttctgttctactgtaa--aaatggcaggttatatattttgtttggcaaacttattgt-cgaaatcatcatgcctctaa-c 24150449  T
Q  807 ttgccacttttctaaccataacttttacctttcattaaaaa 847  Q
    ||| ||||||||| | ||||||||||| | |||||||||||    
T  24150448 ttg-cacttttcttaacataactttta-cgttcattaaaaa 24150410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 712 - 834
Target Start/End: Original strand, 30589214 - 30589336
Alignment:
Q  712 tacgtttcttccaaattcttttctgttctattgtaaccaatgggcaggttatatattttgtttgg-----ttattgtccaaaatcatcatacctctaacc 806  Q
    |||||||||||||||||||||||||||||| ||||| |||| | |||||||||||||||||||||     ||||||| | |||||||||| ||||||| |    
T  30589214 tacgtttcttccaaattcttttctgttctactgtaa-caat-gacaggttatatattttgtttggcaaacttattgt-cgaaatcatcatgcctctaa-c 30589309  T
Q  807 ttgccacttttctaaccataacttttac 834  Q
    ||| ||||||||| | ||||||||||||    
T  30589310 ttg-cacttttcttaacataacttttac 30589336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 712 - 847
Target Start/End: Complemental strand, 19551873 - 19551740
Alignment:
Q  712 tacgtttcttccaaattcttttctgttctattgtaaccaatgggcaggttatatattttgtttg-----gttattgtccaaaatcatcatacctctaacc 806  Q
    |||||||||||||||||||||||||||||| ||||  |||| ||||||||||||||||||||||      ||||||| | |||||||||| ||||||| |    
T  19551873 tacgtttcttccaaattcttttctgttctactgta--caat-ggcaggttatatattttgtttgacaaacttattgt-cgaaatcatcatgcctctaa-c 19551779  T
Q  807 ttgccacttttctaaccataacttttacctttcattaaaaa 847  Q
    ||| ||||||||| | ||||||||||| | |||||||||||    
T  19551778 ttg-cacttttcttaacataactttta-cgttcattaaaaa 19551740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 716 - 847
Target Start/End: Complemental strand, 26293276 - 26293146
Alignment:
Q  716 tttcttccaaattcttttctgttctattgtaaccaatgggcaggttatatattttgtttgg-----ttattgtccaaaatcatcatacctctaaccttgc 810  Q
    |||||||||||||||||||| ||||| ||||| |||| |||||||||||||||||||||||     ||||||| | |||||||||| ||||||||  | |    
T  26293276 tttcttccaaattcttttctattctactgtaa-caat-ggcaggttatatattttgtttggcaaacttattgt-cgaaatcatcatgcctctaac--ttc 26293182  T
Q  811 cacttttctaaccataacttttacctttcattaaaaa 847  Q
    ||||||||| | ||||||||||| | |||||||||||    
T  26293181 cacttttcttaacataactttta-cgttcattaaaaa 26293146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 385 - 484
Target Start/End: Complemental strand, 10105086 - 10104984
Alignment:
Q  385 ttgagatttcaaaggattttaatagacttttttatgaaaagaaaatttt---ttattgaatcaagacttttattgaatctaaataaatcatgtggtattc 481  Q
    |||||||||||| ||||||||| |||||||||||| | || ||||| ||    |||| |||||||||||||||  ||| |||||||||| ||||||||||    
T  10105086 ttgagatttcaagggattttaaaagacttttttattataaaaaaatcttgtggtattcaatcaagacttttataaaatataaataaatcttgtggtattc 10104987  T
Q  482 aat 484  Q
    |||    
T  10104986 aat 10104984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 712 - 834
Target Start/End: Complemental strand, 26005570 - 26005448
Alignment:
Q  712 tacgtttcttccaaattcttttctgttctattgtaaccaatgggcaggttatatattttgtttgg-----ttattgtccaaaatcatcatacctctaacc 806  Q
    |||||||||||||||||||||||||||||| ||||| |||| | || ||||||||||||||||||     ||||||| | |||||||||| ||||||| |    
T  26005570 tacgtttcttccaaattcttttctgttctactgtaa-caat-gacatgttatatattttgtttggcaaacttattgt-cgaaatcatcatgcctctaa-c 26005475  T
Q  807 ttgccacttttctaaccataacttttac 834  Q
    ||| ||||||||| | ||||||||||||    
T  26005474 ttg-cacttttcttaacataacttttac 26005448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 435 - 509
Target Start/End: Complemental strand, 12103421 - 12103347
Alignment:
Q  435 tattgaatcaagacttttattgaatctaaataaatcatgtggtattcaatcaagacaattaagactttcttttca 509  Q
    |||| |||| ||| ||||||||||| |||||||||| ||| |||||||||||||||||| | |||||| ||||||    
T  12103421 tattcaatctagatttttattgaatataaataaatcttgtagtattcaatcaagacaatcatgacttttttttca 12103347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 385 - 484
Target Start/End: Complemental strand, 10225862 - 10225760
Alignment:
Q  385 ttgagatttcaaaggattttaatagacttttttatgaaaagaaaatttttt---attgaatcaagacttttattgaatctaaataaatcatgtggtattc 481  Q
    |||||||||||| ||||||||| |||||||||||| | || ||| | || |   ||| |||||||||||||||  ||| |||||||||| ||||||||||    
T  10225862 ttgagatttcaagggattttaaaagacttttttattataaaaaagtcttgtgctattcaatcaagacttttataaaatataaataaatcttgtggtattc 10225763  T
Q  482 aat 484  Q
    |||    
T  10225762 aat 10225760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 712 - 853
Target Start/End: Complemental strand, 50900145 - 50900007
Alignment:
Q  712 tacgtttcttccaaattcttttctgttctattgtaaccaatgggcaggttatatattttgtttgg---ttattgtccaaaatcatcatacctctaacctt 808  Q
    ||||||||||||||||||||||||||| || | ||| |||| |||| ||||||||||||||||||    | |||| | |||||||||| ||||||| |||    
T  50900145 tacgtttcttccaaattcttttctgttatactctaa-caat-ggcatgttatatattttgtttggcaaattttgt-cgaaatcatcatgcctctaa-ctt 50900050  T
Q  809 gccacttttctaaccataacttttacctttcattaaaaacaaaaa 853  Q
    | ||||||||| | ||||||||||| | ||||||||||| |||||    
T  50900049 g-cacttttcttaacataactttta-cgttcattaaaaaaaaaaa 50900007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 372 - 417
Target Start/End: Complemental strand, 26006068 - 26006023
Alignment:
Q  372 ggggcgtattgaattgagatttcaaaggattttaatagactttttt 417  Q
    |||| |||||| ||||||||||||||||||||||| ||||||||||    
T  26006068 ggggtgtattggattgagatttcaaaggattttaaaagactttttt 26006023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 372 - 417
Target Start/End: Original strand, 26555813 - 26555858
Alignment:
Q  372 ggggcgtattgaattgagatttcaaaggattttaatagactttttt 417  Q
    |||| |||||| ||||||||||||||||||||||| ||||||||||    
T  26555813 ggggtgtattggattgagatttcaaaggattttaaaagactttttt 26555858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 372 - 417
Target Start/End: Complemental strand, 36055092 - 36055047
Alignment:
Q  372 ggggcgtattgaattgagatttcaaaggattttaatagactttttt 417  Q
    |||| |||||| ||||||||||||||||||||||| ||||||||||    
T  36055092 ggggtgtattggattgagatttcaaaggattttaaaagactttttt 36055047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 377 - 417
Target Start/End: Complemental strand, 26293647 - 26293607
Alignment:
Q  377 gtattgaattgagatttcaaaggattttaatagactttttt 417  Q
    |||||||||||| ||||||||||||||||| ||||||||||    
T  26293647 gtattgaattgaaatttcaaaggattttaaaagactttttt 26293607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 712 - 748
Target Start/End: Complemental strand, 36054714 - 36054678
Alignment:
Q  712 tacgtttcttccaaattcttttctgttctattgtaac 748  Q
    |||||||||||||||||||||||||||||| ||||||    
T  36054714 tacgtttcttccaaattcttttctgttctactgtaac 36054678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 377 - 417
Target Start/End: Original strand, 38682430 - 38682470
Alignment:
Q  377 gtattgaattgagatttcaaaggattttaatagactttttt 417  Q
    |||||| ||||||||||||||||||||||| ||||||||||    
T  38682430 gtattgtattgagatttcaaaggattttaaaagactttttt 38682470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 377 - 416
Target Start/End: Complemental strand, 10067764 - 10067725
Alignment:
Q  377 gtattgaattgagatttcaaaggattttaatagacttttt 416  Q
    |||||||||||||||||||| ||||||||| |||||||||    
T  10067764 gtattgaattgagatttcaagggattttaaaagacttttt 10067725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 568 - 634
Target Start/End: Original strand, 27593350 - 27593416
Alignment:
Q  568 tggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagactttttagt 634  Q
    ||||||| ||||||  | |||||||||||||||  | || |||||||||| ||||||||||||||||    
T  27593350 tggtattcaaaattgtaaggattttaatggattgttgtgagtaatggattttgtgagactttttagt 27593416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 528 - 634
Target Start/End: Complemental strand, 38629726 - 38629620
Alignment:
Q  528 gtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagact 627  Q
    |||||||||| ||||||   | |||||| ||| |||||  ||||||| |||| || |||||||||||||||||  | || |||||||||| ||||||| |    
T  38629726 gtattcaattgagattttgcataacttaaaaattgtctactggtattcaaaactatacggattttaatggattgttgtgagtaatggattttgtgagatt 38629627  T
Q  628 ttttagt 634  Q
     ||||||    
T  38629626 gtttagt 38629620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 379 - 417
Target Start/End: Complemental strand, 52024278 - 52024240
Alignment:
Q  379 attgaattgagatttcaaaggattttaatagactttttt 417  Q
    |||| ||||||||||||||||||||||| ||||||||||    
T  52024278 attggattgagatttcaaaggattttaaaagactttttt 52024240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 372 - 417
Target Start/End: Original strand, 13662547 - 13662592
Alignment:
Q  372 ggggcgtattgaattgagatttcaaaggattttaatagactttttt 417  Q
    |||| |||||| ||||||||||||||| ||||||| ||||||||||    
T  13662547 ggggtgtattggattgagatttcaaagaattttaaaagactttttt 13662592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 715 - 772
Target Start/End: Complemental strand, 38629509 - 38629454
Alignment:
Q  715 gtttcttccaaattcttttctgttctattgtaaccaatgggcaggttatatattttgt 772  Q
    ||||||| ||||||||||||||||||| ||||| |||| ||||| |||||||||||||    
T  38629509 gtttctttcaaattcttttctgttctactgtaa-caat-ggcagattatatattttgt 38629454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 34)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 372 - 690
Target Start/End: Original strand, 43488905 - 43489227
Alignment:
Q  372 ggggcgtattgaattgagatttcaaaggattttaatagacttttttatgaaaagaaaattttt---tattgaatcaagacttttattgaatctaaataaa 468  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||    |||||||||||||||||||| |||||||||||||    
T  43488905 ggggtgtattgaattgaaatttcaaaggattttaatagacttttttatgaaaagaaaatcttgaggtattgaatcaagacttttatggaatctaaataaa 43489004  T
Q  469 tcatgtggtattcaatcaagacaattaagactttcttttcaagacatcaaaatccatttgtattcaattaagatttctaagaacttataaaatgtctcgt 568  Q
    || ||| ||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||    
T  43489005 tcttgtagtattcaatcaagacaattaagacttttttttcaagacatcaaaatccgttggtattcaattaagatttctaagaacttataaaatgtctcgt 43489104  T
Q  569 ggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagactttttagtt-aaatacactcatccaacaatctcaaacaaact 667  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||    
T  43489105 ggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagactttttagttaaaatacactcatctaacaatctcacacaaact 43489204  T
Q  668 ctttagattttgtaatactcttc 690  Q
    ||| |||||||||||||||||||    
T  43489205 cttgagattttgtaatactcttc 43489227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 372 - 688
Target Start/End: Original strand, 42366049 - 42366361
Alignment:
Q  372 ggggcgtattgaattgagatttcaaaggattttaatagacttttttatgaaaagaaaatttttt---attgaatcaagacttttattgaatctaaataaa 468  Q
    |||| |||||| |||| |||||||||| ||||||| ||| |||||||||| || ||| |||  |   ||| |||||| ||||||||  ||||| ||||||    
T  42366049 ggggtgtattggattgtgatttcaaagcattttaaaagatttttttatgataaaaaagtttggtggtattcaatcaaaacttttataaaatctgaataaa 42366148  T
Q  469 tcatgtggtattcaatcaagacaattaagactttcttttcaagacatcaaaatccatttgtattcaattaagatttctaagaacttataaaatgtctcgt 568  Q
    ||||||||||||||||||||||         ||| |||| || ||||  |||| | || ||||||| || ||||||||| |||||||||||||||||| |    
T  42366149 tcatgtggtattcaatcaagact--------ttttttttaaatacattgaaattcgttggtattcatttgagatttctaggaacttataaaatgtctctt 42366240  T
Q  569 ggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagactttttagtt-aaatacactcatccaacaatctcaaacaaact 667  Q
    ||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||| ||||| ||||||| |||||||||| |||||||    
T  42366241 ggtattgaaaattagacagattttaatggattcatttgtggaatagattgtgtgagactttttagttaaaatagactcatctaacaatctcacacaaact 42366340  T
Q  668 ctttagattttgtaatactct 688  Q
    ||| ||||||||| |||||||    
T  42366341 cttgagattttgtgatactct 42366361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 372 - 638
Target Start/End: Complemental strand, 39039206 - 39038939
Alignment:
Q  372 ggggcgtattgaattgagatttcaaaggattttaatagacttttttatgaaaagaaaatttt---ttattgaatcaagacttt--tattgaatctaaata 466  Q
    ||||||||| ||||| |||||||||| |||||||| |||  |||| | || |||||||| ||   ||||| ||||||||||||  ||| |||| ||||||    
T  39039206 ggggcgtatcgaattaagatttcaaatgattttaaaagatcttttaaagataagaaaatcttatgttattcaatcaagactttcttatagaatataaata 39039107  T
Q  467 aatcatgtggtattcaatcaagacaattaagactttcttttcaagacatcaaaatccatttgtattcaattaagatttctaagaacttataaaatgtctc 566  Q
    |||| | |||||||||||||||||||| |||| ||| | |||||| || | |||||  || ||||||||||||||||  ||  |||||||||||   ||     
T  39039106 aatc-tatggtattcaatcaagacaatcaagattttttattcaaggcaaccaaatctcttggtattcaattaagattcgtaccaacttataaaa---cta 39039011  T
Q  567 gtggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagactttttagttaaa 638  Q
     ||||||| |||| |  |   |||||||||||||| ||||| ||||| ||| ||||||||||||||||||||    
T  39039010 ttggtattcaaaaatctataaattttaatggattcttttgtataatgaattttgtgagactttttagttaaa 39038939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 372 - 580
Target Start/End: Original strand, 17790435 - 17790645
Alignment:
Q  372 ggggcgtattgaattgagatttcaaaggattttaatagacttttttatgaaaagaaaatttt---ttattgaatcaagacttttattgaatctaaataaa 468  Q
    |||| |||||| |||||||||||||  |||||||| ||||||||| |||| || ||||||||    |||| ||||| |||||||||  ||| |||  |||    
T  17790435 ggggtgtattggattgagatttcaagagattttaaaagactttttgatgataataaaattttgtggtattcaatcatgacttttataaaatataacaaaa 17790534  T
Q  469 tcatgtggtattcaatcaagacaattaagactttcttttcaa-gacatcaaaatccatttgtattcaattaagatttctaagaacttataaaatgtctcg 567  Q
    || ||||||||||||| |||| |||||||||||  ||||||| |||| |||||||  || ||||||||| ||||||| | || |||||||||||||||      
T  17790535 tcttgtggtattcaattaagataattaagactt--ttttcaaggacaacaaaatctgttggtattcaatcaagatttgttaggacttataaaatgtctat 17790632  T
Q  568 tggtattgaaaat 580  Q
    ||||||| |||||    
T  17790633 tggtattaaaaat 17790645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 712 - 834
Target Start/End: Complemental strand, 29259986 - 29259864
Alignment:
Q  712 tacgtttcttccaaattcttttctgttctattgtaaccaatgggcaggttatatattttgtttgg-----ttattgtccaaaatcatcatacctctaacc 806  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||     ||||||| | |||||||||| ||||||| |    
T  29259986 tacgtttcttccaaattcttttctgttctattgtaa-caat-ggcaggttatatattttgtttggcaaacttattgt-cgaaatcatcatgcctctaa-c 29259891  T
Q  807 ttgccacttttctaaccataacttttac 834  Q
    ||| ||||||||| | ||||||||||||    
T  29259890 ttg-cacttttcttaacataacttttac 29259864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 474 - 665
Target Start/End: Original strand, 10127630 - 10127824
Alignment:
Q  474 tggtattcaatcaagacaattaagactttcttttcaagacatcaaaatccatttgtattcaattaagatttctaagaacttataaaatgtctcgtggtat 573  Q
    |||||||||||||||||||| || ||||| |||| |  |||  |||||  ||| ||||||||| ||||||| | || |||||||||||||||  ||||||    
T  10127630 tggtattcaatcaagacaatcaaaacttttttttaagaacaataaaatttattcgtattcaatcaagatttgttaggacttataaaatgtctattggtat 10127729  T
Q  574 tgaaaattagacg-gattttaatggattcatttgtgtaatggattgtgtgaga-ctttttagtt-aaatacactcatccaacaatctcaaacaaa 665  Q
    |||||| || | | ||||| || |||||| || |||||||||||| || ||||  ||||||||| ||||||| |||  ||||||||||| |||||    
T  10127730 tgaaaaatacaagagatttaaaaggattctttagtgtaatggattttgagagatttttttagttaaaatacattcactcaacaatctcatacaaa 10127824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 712 - 776
Target Start/End: Complemental strand, 40264992 - 40264930
Alignment:
Q  712 tacgtttcttccaaattcttttctgttctattgtaaccaatgggcaggttatatattttgtttgg 776  Q
    |||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||    
T  40264992 tacgtttcttccaaattcttttctgttctactgtaa-caat-ggcaggttatatattttgtttgg 40264930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 435 - 638
Target Start/End: Original strand, 14061611 - 14061814
Alignment:
Q  435 tattgaatcaagacttttattgaatctaaataaatcatgtggtattcaatcaagacaattaagactttcttttcaagacatcaaaatccatttgtattca 534  Q
    |||| |||||||| |||||| |||| |||||||||| |||||||||||||||||||||| |||||||| | ||||   || | |||| |  | |||||||    
T  14061611 tattcaatcaagatttttatagaatataaataaatcttgtggtattcaatcaagacaatcaagactttttattcagtgcaacgaaattcggtggtattca 14061710  T
Q  535 attaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagactttttagt 634  Q
    | | ||| ||      |||||||||||||||  ||||||| |||| || ||  |||||||||||||| ||| |  | |||||| |||||||||||||||     
T  14061711 aatgagactttggccgacttataaaatgtctgttggtattcaaaagtatacaaattttaatggattcttttatagagtggattttgtgagactttttagc 14061810  T
Q  635 taaa 638  Q
    ||||    
T  14061811 taaa 14061814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 435 - 638
Target Start/End: Original strand, 24317976 - 24318184
Alignment:
Q  435 tattgaatcaagacttttattgaatctaaataaatcatgtggtattcaatcaagacaattaagac-tttcttttcaagacatcaaaatccatttgt-att 532  Q
    |||| |||||||||||||||  ||| ||||| |||| ||||||| ||||| ||| |||| ||||| ||| |||||||  || | |||||| || || |||    
T  24317976 tattcaatcaagacttttatataatataaattaatcttgtggtactcaattaaggcaatcaagacattttttttcaatgcaacgaaatccgttggtcatt 24318075  T
Q  533 caa---ttaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagacttt 629  Q
    |||   ||| ||||||| | ||||||||||||||||   |||||| |||| | ||  |||||| |||||||| ||| || |||||||| |||||||||||    
T  24318076 caaaaattaggatttctcacaacttataaaatgtctttcggtattcaaaaattgatagattttgatggattcttttatggaatggattttgtgagacttt 24318175  T
Q  630 ttagttaaa 638  Q
    || ||||||    
T  24318176 ttggttaaa 24318184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 712 - 776
Target Start/End: Complemental strand, 41965512 - 41965450
Alignment:
Q  712 tacgtttcttccaaattcttttctgttctattgtaaccaatgggcaggttatatattttgtttgg 776  Q
    |||||||||||||||||||||||||||||| |||||  ||  |||||||||||||||||||||||    
T  41965512 tacgtttcttccaaattcttttctgttctactgtaa--aaatggcaggttatatattttgtttgg 41965450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 712 - 776
Target Start/End: Complemental strand, 43605079 - 43605017
Alignment:
Q  712 tacgtttcttccaaattcttttctgttctattgtaaccaatgggcaggttatatattttgtttgg 776  Q
    |||||||||||||||||||||| ||||||| ||||| |||| |||||||||||||||||||||||    
T  43605079 tacgtttcttccaaattcttttttgttctactgtaa-caat-ggcaggttatatattttgtttgg 43605017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 712 - 775
Target Start/End: Complemental strand, 41386578 - 41386517
Alignment:
Q  712 tacgtttcttccaaattcttttctgttctattgtaaccaatgggcaggttatatattttgtttg 775  Q
    |||||||||||||||||||||||||||||||||||| ||||  ||||||||||||| |||||||    
T  41386578 tacgtttcttccaaattcttttctgttctattgtaa-caat-cgcaggttatatatgttgtttg 41386517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 712 - 775
Target Start/End: Complemental strand, 41965291 - 41965230
Alignment:
Q  712 tacgtttcttccaaattcttttctgttctattgtaaccaatgggcaggttatatattttgtttg 775  Q
    ||||||| |||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||    
T  41965291 tacgtttattccaaattcttttctgttctaatgtaa-caat-ggcaggttatatattttgtttg 41965230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 528 - 634
Target Start/End: Original strand, 8502790 - 8502896
Alignment:
Q  528 gtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagact 627  Q
    |||||||||||||||||   | |||||| ||| |||||  ||||||| ||||||  |||||||||||||||||  | || |||||||||| | |||||||    
T  8502790 gtattcaattaagattttgcacaacttaaaaattgtctattggtatttaaaattctacggattttaatggattgttgtgagtaatggattttatgagact 8502889  T
Q  628 ttttagt 634  Q
    |||||||    
T  8502890 ttttagt 8502896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 712 - 776
Target Start/End: Original strand, 9457885 - 9457947
Alignment:
Q  712 tacgtttcttccaaattcttttctgttctattgtaaccaatgggcaggttatatattttgtttgg 776  Q
    ||||||||||||||||||||||||||||||  |||| |||| |||||| ||||||||||||||||    
T  9457885 tacgtttcttccaaattcttttctgttctaccgtaa-caat-ggcaggatatatattttgtttgg 9457947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 369 - 417
Target Start/End: Complemental strand, 43605452 - 43605404
Alignment:
Q  369 ttaggggcgtattgaattgagatttcaaaggattttaatagactttttt 417  Q
    ||||||| |||||| ||||||||||||||||||||||| ||||||||||    
T  43605452 ttaggggggtattggattgagatttcaaaggattttaaaagactttttt 43605404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 371 - 489
Target Start/End: Original strand, 9209034 - 9209155
Alignment:
Q  371 aggggcgtattgaattgagatttcaaaggattttaatagacttttttatgaaaagaaaattttt---tattgaatcaagacttttattgaatctaaataa 467  Q
    ||||| |||||||||||||||||||||| ||||||| |||||||||| |   || ||| | |||   |||||||||||||||||||  |||||||||  |    
T  9209034 aggggtgtattgaattgagatttcaaagaattttaaaagacttttttgttttaaaaaagtatttaggtattgaatcaagacttttaaggaatctaaaaca 9209133  T
Q  468 atcatgtggtattcaatcaaga 489  Q
     |  ||||||||||||| ||||    
T  9209134 tttttgtggtattcaattaaga 9209155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 372 - 417
Target Start/End: Complemental strand, 1606098 - 1606053
Alignment:
Q  372 ggggcgtattgaattgagatttcaaaggattttaatagactttttt 417  Q
    |||| |||||| ||||||||||||||||||||||| ||||||||||    
T  1606098 ggggtgtattggattgagatttcaaaggattttaaaagactttttt 1606053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 727 - 847
Target Start/End: Complemental strand, 10796067 - 10795948
Alignment:
Q  727 ttcttttctgttctattgtaaccaatgggcaggttatatattttgtttgg-----ttattgtccaaaatcatcatacctctaaccttgccacttttctaa 821  Q
    ||||||||||||||| |||||| ||||| |||||||||||||||||||||     ||||||| | |||| ||||| ||||||| |||| ||||||||| |    
T  10796067 ttcttttctgttctactgtaac-aatgg-caggttatatattttgtttggcaaacttattgt-cgaaattatcatgcctctaa-cttg-cacttttctta 10795973  T
Q  822 ccataacttttacctttcattaaaaa 847  Q
     ||||||||||| |||||||||||||    
T  10795972 acataactttta-ctttcattaaaaa 10795948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 372 - 417
Target Start/End: Complemental strand, 30382759 - 30382714
Alignment:
Q  372 ggggcgtattgaattgagatttcaaaggattttaatagactttttt 417  Q
    |||| ||||| |||||||||||||||||||||||| ||||||||||    
T  30382759 ggggtgtattcaattgagatttcaaaggattttaaaagactttttt 30382714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 517 - 634
Target Start/End: Complemental strand, 37567309 - 37567192
Alignment:
Q  517 aaaatccatttgtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggat 616  Q
    |||||||| | |||||||||| ||||||   | |||||| ||| |||||  ||||||| ||||||  ||||||||||||| |||  | || |||||||||    
T  37567309 aaaatccagtagtattcaattgagattttgcacaacttaaaaattgtctattggtattcaaaattgtacggattttaatgaattgttgtgagtaatggat 37567210  T
Q  617 tgtgtgagactttttagt 634  Q
    | |||||| |||||||||    
T  37567209 tttgtgaggctttttagt 37567192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 377 - 417
Target Start/End: Original strand, 2112795 - 2112835
Alignment:
Q  377 gtattgaattgagatttcaaaggattttaatagactttttt 417  Q
    |||||| ||||||||||||||||||||||| ||||||||||    
T  2112795 gtattggattgagatttcaaaggattttaaaagactttttt 2112835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 518 - 634
Target Start/End: Original strand, 2112939 - 2113055
Alignment:
Q  518 aaatccatttgtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggatt 617  Q
    ||||||| | |||||||||| |||||||  | |||||| ||| |||||  ||||||| |||| |  |||||||||||||||||  | || ||||||||||    
T  2112939 aaatccagtggtattcaattgagatttcgcataacttaaaaattgtctactggtattcaaaactctacggattttaatggattgttgtgagtaatggatt 2113038  T
Q  618 gtgtgagactttttagt 634  Q
     ||||||| | ||||||    
T  2113039 ttgtgagattgtttagt 2113055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 712 - 776
Target Start/End: Original strand, 2113169 - 2113231
Alignment:
Q  712 tacgtttcttccaaattcttttctgttctattgtaaccaatgggcaggttatatattttgtttgg 776  Q
    ||||||||||||||| ||||||||| |||| |||||  ||| |||||||||||||||||||||||    
T  2113169 tacgtttcttccaaaatcttttctgctctactgtaa-taat-ggcaggttatatattttgtttgg 2113231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 377 - 417
Target Start/End: Original strand, 7148050 - 7148090
Alignment:
Q  377 gtattgaattgagatttcaaaggattttaatagactttttt 417  Q
    |||||| ||||||||||||||||||||||| ||||||||||    
T  7148050 gtattggattgagatttcaaaggattttaaaagactttttt 7148090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 377 - 417
Target Start/End: Original strand, 28619847 - 28619887
Alignment:
Q  377 gtattgaattgagatttcaaaggattttaatagactttttt 417  Q
    |||||| ||||||||||||||||||||||| ||||||||||    
T  28619847 gtattggattgagatttcaaaggattttaaaagactttttt 28619887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 712 - 776
Target Start/End: Original strand, 43489258 - 43489320
Alignment:
Q  712 tacgtttcttccaaattcttttctgttctattgtaaccaatgggcaggttatatattttgtttgg 776  Q
    |||||||| ||||||||||||| ||||||| ||||| |||| ||||| |||||||||||||||||    
T  43489258 tacgtttcatccaaattcttttttgttctactgtaa-caat-ggcagattatatattttgtttgg 43489320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 712 - 775
Target Start/End: Original strand, 7148413 - 7148474
Alignment:
Q  712 tacgtttcttccaaattcttttctgttctattgtaaccaatgggcaggttatatattttgtttg 775  Q
    ||||||||||||||||||||||||||| || ||||| |||| || || ||||||||||||||||    
T  7148413 tacgtttcttccaaattcttttctgttttactgtaa-caat-ggtagattatatattttgtttg 7148474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 372 - 419
Target Start/End: Complemental strand, 10802856 - 10802809
Alignment:
Q  372 ggggcgtattgaattgagatttcaaaggattttaatagacttttttat 419  Q
    |||| |||||||||||||||||||||  ||||||| ||||||||||||    
T  10802856 ggggtgtattgaattgagatttcaaataattttaaaagacttttttat 10802809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 715 - 748
Target Start/End: Original strand, 4655421 - 4655454
Alignment:
Q  715 gtttcttccaaattcttttctgttctattgtaac 748  Q
    ||||||||||||||||||||||||||| ||||||    
T  4655421 gtttcttccaaattcttttctgttctactgtaac 4655454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 372 - 417
Target Start/End: Complemental strand, 29260361 - 29260316
Alignment:
Q  372 ggggcgtattgaattgagatttcaaaggattttaatagactttttt 417  Q
    |||| |||||| |||||||||| |||||||||||| ||||||||||    
T  29260361 ggggtgtattggattgagattttaaaggattttaaaagactttttt 29260316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 517 - 634
Target Start/End: Complemental strand, 30382611 - 30382494
Alignment:
Q  517 aaaatccatttgtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggat 616  Q
    |||||||| | |||||||||| ||||||   | |||||| ||| |||||  ||||||| ||||||  | |||||||||||||||  | || |||||  ||    
T  30382611 aaaatccagtggtattcaattgagattttgcacaacttaaaaattgtctattggtattcaaaattgtaaggattttaatggattgttgtgagtaatcaat 30382512  T
Q  617 tgtgtgagactttttagt 634  Q
    | ||||||||||||||||    
T  30382511 tttgtgagactttttagt 30382494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 372 - 417
Target Start/End: Complemental strand, 40265366 - 40265321
Alignment:
Q  372 ggggcgtattgaattgagatttcaaaggattttaatagactttttt 417  Q
    |||| |||||| ||||| ||||||||||||||||| ||||||||||    
T  40265366 ggggtgtattggattgaaatttcaaaggattttaaaagactttttt 40265321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 372 - 417
Target Start/End: Original strand, 42274971 - 42275016
Alignment:
Q  372 ggggcgtattgaattgagatttcaaaggattttaatagactttttt 417  Q
    |||| |||||| ||||||||||||||||||||||| ||| ||||||    
T  42274971 ggggtgtattggattgagatttcaaaggattttaaaagattttttt 42275016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 372 - 693
Target Start/End: Original strand, 56397442 - 56397767
Alignment:
Q  372 ggggcgtattgaattgagatttcaaaggattttaatagacttttttatgaaaagaaaattttt---tattgaatcaagacttttattgaatctaaataaa 468  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    |||||| ||||||||||||| |||||||||||||    
T  56397442 ggggtgtattgaattgagatttcaaaggattttaatagacttttttatgaaaagaaaatcttgaggtattgattcaagacttttatggaatctaaataaa 56397541  T
Q  469 tcatgtggtattcaatcaagacaattaagactttcttttcaagacatcaaaatccatttgtattcaattaagatttctaagaacttataaaatgtctcgt 568  Q
    |  |||||||||||||||| |||| ||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||    
T  56397542 ttttgtggtattcaatcaaaacaactaagacttttttttcaagacatcaaaatccgttggtattcaattaagatttctaagaacttataacatgtctcgt 56397641  T
Q  569 ggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagactttttagtt-aaatacactcatccaacaatctcaaacaaact 667  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  56397642 ggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagactttttagttaaaatacactcatccaacaatctcacacaaact 56397741  T
Q  668 ctttagattttgtaatactcttccaa 693  Q
    ||| ||||||||||||||||||||||    
T  56397742 cttgagattttgtaatactcttccaa 56397767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 200; E-Value: 1e-108
Query Start/End: Original strand, 435 - 693
Target Start/End: Original strand, 42314964 - 42315223
Alignment:
Q  435 tattgaatcaagacttttattgaatctaaataaatcatgtggtattcaatcaagacaattaagactttcttttcaagacatcaaaatccatttgtattca 534  Q
    ||||||||||||| |||||| ||||||||||||||| ||||||||||||| |||||||| || ||||| |||||||||||||||||||| || |||||||    
T  42314964 tattgaatcaagatttttatggaatctaaataaatcttgtggtattcaatgaagacaataaaaacttttttttcaagacatcaaaatccgttggtattca 42315063  T
Q  535 attaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagactttttagt 634  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  42315064 attaagatttctaaaaacttataaaatgtctcgtggtattgaaaattagacggatttcaatggattcatttgtgtaatggattgtgtgagactttttagt 42315163  T
Q  635 t-aaatacactcatccaacaatctcaaacaaactctttagattttgtaatactcttccaa 693  Q
    | |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  42315164 taaaatacactcatccaacaatctcacacaaactcttgagattttgtaatactcttccaa 42315223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 435 - 638
Target Start/End: Complemental strand, 28100601 - 28100398
Alignment:
Q  435 tattgaatcaagacttttattgaatctaaataaatcatgtggtattcaatcaagacaattaagactttcttttcaagacatcaaaatccatttgtattca 534  Q
    |||| |||||||||||||||  ||| |||||||||| | |||||||||||||||||||| |||||||| ||| |||   | | |||||| ||  ||||||    
T  28100601 tattcaatcaagacttttataaaatataaataaatcttatggtattcaatcaagacaatcaagactttttttacaatgtaacgaaatccgttgatattca 28100502  T
Q  535 attaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagactttttagt 634  Q
    |||||||||||| | ||||||||||||||||  | ||||| |||| |  |  |||||| |||||||| ||| || |||||||| || |||||||||||||    
T  28100501 attaagatttctcacaacttataaaatgtcttttagtattcaaaaattaatagattttgatggattcttttatggaatggattttgagagactttttagt 28100402  T
Q  635 taaa 638  Q
    ||||    
T  28100401 taaa 28100398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 372 - 679
Target Start/End: Original strand, 38230771 - 38231082
Alignment:
Q  372 ggggcgtattgaattgagatttcaaaggattttaatagacttttttatgaaaagaaaattttt----tattgaatcaagacttttattgaatctaaataa 467  Q
    |||| ||||||||||| |||||||| ||||||||| ||||||||||| |||   |||| | |     |||| |||||||||||||||  ||| |||| ||    
T  38230771 ggggtgtattgaattgggatttcaagggattttaaaagactttttta-gaatgaaaaagtctagtggtattcaatcaagacttttataaaatttaaacaa 38230869  T
Q  468 atcatgtggtattcaatcaagacaattaagactttcttttcaagacatcaaaatccatttgtattcaattaagatttctaagaacttataaaatgtctcg 567  Q
    ||| |||||||||||||||||||||| | |||||| |||| ||| || |||||||| || |||||||||| |||||||| |  |||||| || ||||       
T  38230870 atcttgtggtattcaatcaagacaatcatgactttttttttaaggcaacaaaatccgttggtattcaattgagatttctcatgacttatgaattgtccat 38230969  T
Q  568 tggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagactttttagttaaataca-ctcatccaacaatctcaaacaaac 666  Q
    ||||||| |||| |  |  |||||| |||||||| |   || |||||||| |||||||||||||||||||| | | ||| ||||||||||||| | ||||    
T  38230970 tggtattcaaaagtctatagattttgatggattcttggatggaatggattttgtgagactttttagttaaaaatatctcttccaacaatctcacagaaac 38231069  T
Q  667 tctttagattttg 679  Q
     ||| ||||||||    
T  38231070 ccttgagattttg 38231082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 435 - 638
Target Start/End: Complemental strand, 37370906 - 37370703
Alignment:
Q  435 tattgaatcaagacttttattgaatctaaataaatcatgtggtattcaatcaagacaattaagactttcttttcaagacatcaaaatccatttgtattca 534  Q
    |||| |||||| ||||||||  ||| |||||||||| ||||||||||||| |||||||| | |||||| |||  || ||| | ||||   ||  ||||||    
T  37370906 tattcaatcaaaacttttataaaatataaataaatcttgtggtattcaattaagacaatcatgactttttttaaaatacaacgaaatttgttgctattca 37370807  T
Q  535 attaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagactttttagt 634  Q
    |||||||||||| | |||||||||||||||    |||||| |||| | ||  ||||||||||||||| ||| || |||||||| ||||||||||| ||||    
T  37370806 attaagatttctcacaacttataaaatgtccttcggtattcaaaaattgatagattttaatggattcttttatggaatggattttgtgagactttatagt 37370707  T
Q  635 taaa 638  Q
    ||||    
T  37370706 taaa 37370703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 369 - 638
Target Start/End: Original strand, 41761975 - 41762246
Alignment:
Q  369 ttaggggcgtattgaattgagatttcaaaggattttaatagacttttttatgaaaagaaaatttttt---attgaatcaagactttt-attgaatctaaa 464  Q
    ||||||| |||||| |||||||||| |||||||||||| ||||||| | || | || ||| | || |   ||||||||||||||||| ||  ||| ||||    
T  41761975 ttaggggtgtattggattgagattttaaaggattttaaaagactttgtgattataaaaaagtcttgtggtattgaatcaagactttttataaaatataaa 41762074  T
Q  465 taaatcatgtggtattcaatcaagacaattaagactttcttttcaagacatcaaaatccatttgtattcaattaagatttctaagaacttataaaatgtc 564  Q
    ||| || ||||||||||||  |||||||| |||||||| |||| || ||| | |||||  || ||||||||||| ||||||| | |||||||||||||||    
T  41762075 taagtcttgtggtattcaactaagacaatcaagacttt-ttttgaatacaacgaaatcg-ttggtattcaattaggatttctcacaacttataaaatgtc 41762172  T
Q  565 tcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagactttttagttaaa 638  Q
    |  ||||||| ||||||  | |||| || ||| |||| ||| || | |||||| ||||| | ||||||||||||    
T  41762173 ttttggtatttaaaattttatggatattgatgaattcttttatggagtggattttgtgaaattttttagttaaa 41762246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 377 - 638
Target Start/End: Original strand, 53271913 - 53272177
Alignment:
Q  377 gtattgaattgagatttcaaaggattttaatagacttttttatgaaaagaaaatttttt---attgaatcaagacttttattgaatctaaataaatcatg 473  Q
    ||||||||||| |||||||  ||||||||| |||||||||||  | || ||| | || |   ||| |||||||||||||||  ||| |||||||||  ||    
T  53271913 gtattgaattgggatttcatgggattttaaaagacttttttaaaataaaaaagtcttgtgatattcaatcaagacttttatataatataaataaatattg 53272012  T
Q  474 tggtattcaatcaagacaattaagactttcttttcaagacatcaaaatccatttgtattcaattaagatttctaagaacttataaaatgtctcgtggtat 573  Q
    |||||||||||||||||||| |||||||| | |||| | || | ||||||  | |||||||| | ||| ||      |||||||||||||||  ||||||    
T  53272013 tggtattcaatcaagacaatcaagactttttattcagggcaacgaaatccggtggtattcaaatgagactttggctgacttataaaatgtctattggtat 53272112  T
Q  574 tgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagactttttagttaaa 638  Q
    | |||| || ||  |||||||||||||| ||| || | |||||| ||||||||||||||| ||||    
T  53272113 tcaaaagtatacatattttaatggattcttttatggagtggattttgtgagactttttagctaaa 53272177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 378 - 631
Target Start/End: Original strand, 53594091 - 53594347
Alignment:
Q  378 tattgaattgagatttcaaaggattttaatagacttttttatgaaaagaaaatttttt---attgaatcaagacttttattgaatctaaataaatcatgt 474  Q
    |||| |||||||||||||| | ||||||| |||||||||||| | |  ||| | || |   ||| |||||| | ||||||  ||| |||||||||| |||    
T  53594091 tattaaattgagatttcaatgaattttaaaagacttttttattatagaaaagtcttgtggcattcaatcaaaaattttataaaatataaataaatcttgt 53594190  T
Q  475 ggtattcaatcaagacaattaagactttcttttcaagacatcaaaatccatttgtattcaattaagatttctaagaacttataaaatgtctcgtggtatt 574  Q
    |||||||||| || |||||   || ||| |||||||  ||   |||||| || ||||||||||| ||||||| | ||||||||||||||||   ||||||    
T  53594191 ggtattcaattaaaacaatcgtgatttttttttcaatgcaatgaaatccgttggtattcaattaggatttctcacaacttataaaatgtctttcggtatt 53594290  T
Q  575 gaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagacttttt 631  Q
     |||| | ||  |||||| |||||||  ||| || |||||||| |||||||||||||    
T  53594291 aaaaaattgatagattttgatggatttttttatggaatggattttgtgagacttttt 53594347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 712 - 834
Target Start/End: Complemental strand, 42218155 - 42218033
Alignment:
Q  712 tacgtttcttccaaattcttttctgttctattgtaaccaatgggcaggttatatattttgtttgg-----ttattgtccaaaatcatcatacctctaacc 806  Q
    |||||||||||||||||||||||| ||||| ||||| |||| ||||| |||||||||||||||||     ||||||| | |||||||||| ||||||| |    
T  42218155 tacgtttcttccaaattcttttctattctactgtaa-caat-ggcagattatatattttgtttggcaaacttattgt-cgaaatcatcatgcctctaa-c 42218060  T
Q  807 ttgccacttttctaaccataacttttac 834  Q
    ||| ||||||||| | ||||||||||||    
T  42218059 ttg-cacttttcttaacataacttttac 42218033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 372 - 638
Target Start/End: Original strand, 44646720 - 44646980
Alignment:
Q  372 ggggcgtattgaattgagatttcaaaggattttaatagacttttttatgaaaagaaaatttttt---attgaatcaagacttttattgaatctaaataaa 468  Q
    |||| |||||||||  |||||||||  |||||||| ||||||||| |||| || ||||| || |   ||| |||||||||||||||  ||  ||||||||    
T  44646720 ggggtgtattgaatcaagatttcaagagattttaaaagactttttaatgataaaaaaatcttgtggtattcaatcaagacttttataaaacataaataaa 44646819  T
Q  469 tcatgtggtattcaatcaagacaattaagactttcttttcaagacatcaaaatccatttgtattcaattaagatttctaagaacttataaaatgtctcgt 568  Q
    || | ||||||||||||         |||||||| | ||||||||| | ||||||  | ||||||||||||||||| ||  ||||| ||||||||||  |    
T  44646820 tcttatggtattcaatc---------aagactttttattcaagacaaccaaatcccatagtattcaattaagatttgtaccaacttttaaaatgtctatt 44646910  T
Q  569 ggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagactttttagttaaa 638  Q
    |||||| |||| |   | |||||||||| |||| ||| |  |||| ||| | | ||||||||||||||||    
T  44646911 ggtattcaaaaatctgcagattttaatgaattcttttatagaatgaattttataagactttttagttaaa 44646980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 712 - 775
Target Start/End: Original strand, 44930253 - 44930314
Alignment:
Q  712 tacgtttcttccaaattcttttctgttctattgtaaccaatgggcaggttatatattttgtttg 775  Q
    |||||||||||||||||||||||||||||| | ||| |||| ||||||||||||||||||||||    
T  44930253 tacgtttcttccaaattcttttctgttctactataa-caat-ggcaggttatatattttgtttg 44930314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 712 - 775
Target Start/End: Original strand, 56397782 - 56397843
Alignment:
Q  712 tacgtttcttccaaattcttttctgttctattgtaaccaatgggcaggttatatattttgtttg 775  Q
    |||||||||||||||||||||||||||||| || || |||| ||||||||||||||||||||||    
T  56397782 tacgtttcttccaaattcttttctgttctactgcaa-caat-ggcaggttatatattttgtttg 56397843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 461 - 511
Target Start/End: Original strand, 20539023 - 20539073
Alignment:
Q  461 taaataaatcatgtggtattcaatcaagacaattaagactttcttttcaag 511  Q
    |||||||||| ||||||||||||||||||||||||||||||| | ||||||    
T  20539023 taaataaatcttgtggtattcaatcaagacaattaagactttttattcaag 20539073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 716 - 847
Target Start/End: Complemental strand, 3435680 - 3435550
Alignment:
Q  716 tttcttccaaattcttttctgttctattgtaaccaatgggcaggttatatattttgtttgg-----ttattgtccaaaatcatcatacctctaaccttgc 810  Q
    ||||||||||||||| |||||||||| ||||| |||| |||||||||||||||||||||||     ||||||| | |||||||||| ||||||||  |      
T  3435680 tttcttccaaattctcttctgttctactgtaa-caat-ggcaggttatatattttgtttggcaaacttattgt-cgaaatcatcatgcctctaac--tta 3435586  T
Q  811 cacttttctaaccataacttttacctttcattaaaaa 847  Q
    ||||||||| | ||||||||||| | |||||||||||    
T  3435585 cacttttcttaacataactttta-cgttcattaaaaa 3435550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 435 - 563
Target Start/End: Original strand, 27529144 - 27529272
Alignment:
Q  435 tattgaatcaagacttttattgaatctaaataaatcatgtggtattcaatcaagacaattaagactttcttttcaa-gacatcaaaatccatttgtattc 533  Q
    |||| ||||| |||||||||  ||| |||  ||||| ||||||||||||| |||||||| |||||||| ||||||| |||| |||||||   | |||||     
T  27529144 tattcaatcatgacttttatgaaatataagaaaatcttgtggtattcaattaagacaatcaagacttt-ttttcaaggacaacaaaatctgatggtattt 27529242  T
Q  534 aattaagatttctaagaacttataaaatgt 563  Q
    ||||||||||| | || |||||||||||||    
T  27529243 aattaagatttgttaggacttataaaatgt 27529272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 712 - 847
Target Start/End: Original strand, 7820423 - 7820557
Alignment:
Q  712 tacgtttcttccaaattcttttctgttctattgtaaccaatgggcaggttatatattttgtttgg-----ttattgtccaaaatcatcatacctctaacc 806  Q
    |||||||||||||||||||||| ||||||| | ||| |||| | |||||||||||||||||||||     ||||||| | |||||||||| ||||||| |    
T  7820423 tacgtttcttccaaattcttttatgttctactataa-caat-gacaggttatatattttgtttggcaaacttattgt-cgaaatcatcatgcctctaa-c 7820518  T
Q  807 ttgccacttttctaaccataacttttacctttcattaaaaa 847  Q
    ||| ||||||||| | ||||||||||| | |||||||||||    
T  7820519 ttg-cacttttcttaacataactttta-cgttcattaaaaa 7820557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 712 - 847
Target Start/End: Complemental strand, 8583719 - 8583585
Alignment:
Q  712 tacgtttcttccaaattcttttctgttctattgtaaccaatgggcaggttatatattttgtttgg-----ttattgtccaaaatcatcatacctctaacc 806  Q
    |||||||| ||||||||||||||||||||| | ||| |||| ||||||| |||||||||||||||     ||||||| | |||||||||| ||||||| |    
T  8583719 tacgtttcatccaaattcttttctgttctactataa-caat-ggcaggtcatatattttgtttggcaaacttattgt-cgaaatcatcatgcctctaa-c 8583624  T
Q  807 ttgccacttttctaaccataacttttacctttcattaaaaa 847  Q
    ||| ||||||||| | ||||||||||| | |||||||||||    
T  8583623 ttg-cacttttcttaacataactttta-cgttcattaaaaa 8583585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 371 - 419
Target Start/End: Complemental strand, 8584091 - 8584043
Alignment:
Q  371 aggggcgtattgaattgagatttcaaaggattttaatagacttttttat 419  Q
    ||||| |||||| ||||||||||||||||||||||| ||||||||||||    
T  8584091 aggggtgtattggattgagatttcaaaggattttaaaagacttttttat 8584043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 377 - 502
Target Start/End: Complemental strand, 28847182 - 28847054
Alignment:
Q  377 gtattgaattgagatttcaaaggattttaatagacttttttatgaaaagaaaat---tttttattgaatcaagacttttattgaatctaaataaatcatg 473  Q
    |||||| |||||||||| |||||||||||| |||||||||||| | || ||| |    |  |||| |||||| ||||||||  |||  ||||||||| ||    
T  28847182 gtattggattgagattttaaaggattttaaaagacttttttataataaaaaagtctagtggtattcaatcaaaacttttatgaaatgaaaataaatcttg 28847083  T
Q  474 tggtattcaatcaagacaattaagacttt 502  Q
    ||||||||||| |||||||| | ||||||    
T  28847082 tggtattcaattaagacaatcatgacttt 28847054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 528 - 634
Target Start/End: Complemental strand, 33450105 - 33449999
Alignment:
Q  528 gtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagact 627  Q
    |||||||||| ||||||   | |||||| ||| |||||  ||||||| ||||||  |||||||||||||||||  | || |||||||||| ||||||||     
T  33450105 gtattcaattgagattttgcacaacttaaaaattgtctattggtattcaaaattctacggattttaatggattattgtgagtaatggattttgtgagaca 33450006  T
Q  628 ttttagt 634  Q
    |||||||    
T  33450005 ttttagt 33449999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 371 - 417
Target Start/End: Original strand, 54509712 - 54509758
Alignment:
Q  371 aggggcgtattgaattgagatttcaaaggattttaatagactttttt 417  Q
    ||||| ||||| |||||||||||||||||||||||| ||||||||||    
T  54509712 aggggtgtattcaattgagatttcaaaggattttaaaagactttttt 54509758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 449 - 502
Target Start/End: Original strand, 543940 - 543993
Alignment:
Q  449 ttttattgaatctaaataaatcatgtggtattcaatcaagacaattaagacttt 502  Q
    ||||||||||| |||| |||| ||||||||||||||||||||||| | ||||||    
T  543940 ttttattgaatataaagaaattatgtggtattcaatcaagacaatcatgacttt 543993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 372 - 417
Target Start/End: Original strand, 25935785 - 25935830
Alignment:
Q  372 ggggcgtattgaattgagatttcaaaggattttaatagactttttt 417  Q
    |||| |||||| ||||||||||||||||||||||| ||||||||||    
T  25935785 ggggtgtattggattgagatttcaaaggattttaaaagactttttt 25935830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 372 - 417
Target Start/End: Original strand, 35261614 - 35261659
Alignment:
Q  372 ggggcgtattgaattgagatttcaaaggattttaatagactttttt 417  Q
    |||| |||||| ||||||||||||||||||||||| ||||||||||    
T  35261614 ggggtgtattggattgagatttcaaaggattttaaaagactttttt 35261659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 435 - 507
Target Start/End: Complemental strand, 1848546 - 1848474
Alignment:
Q  435 tattgaatcaagacttttattgaatctaaataaatcatgtggtattcaatcaagacaattaagactttctttt 507  Q
    |||| |||||||||||||||  ||| |||||||||| ||||||||||||| || | ||| |||||||| ||||    
T  1848546 tatttaatcaagacttttataaaatataaataaatcttgtggtattcaattaaaaaaatcaagactttttttt 1848474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 377 - 417
Target Start/End: Original strand, 26336081 - 26336121
Alignment:
Q  377 gtattgaattgagatttcaaaggattttaatagactttttt 417  Q
    ||||| |||||||||||||||||||||||| ||||||||||    
T  26336081 gtattcaattgagatttcaaaggattttaaaagactttttt 26336121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 712 - 834
Target Start/End: Original strand, 42315246 - 42315368
Alignment:
Q  712 tacgtttcttccaaattcttttctgttctattgtaaccaatgggcaggttatatattttgtttgg-----ttattgtccaaaatcatcatacctctaacc 806  Q
    |||||||||| ||||||||||||| ||||| ||||| |||| | ||||||||||||||||||| |     ||||||| | |||||||||| ||||||| |    
T  42315246 tacgtttctttcaaattcttttctattctactgtaa-caat-gacaggttatatattttgttttgcaaacttattgt-cgaaatcatcatgcctctaa-c 42315341  T
Q  807 ttgccacttttctaaccataacttttac 834  Q
    ||| ||||||||| | ||||||||||||    
T  42315342 ttg-cacttttcttaacataacttttac 42315368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 568 - 634
Target Start/End: Original strand, 26336266 - 26336332
Alignment:
Q  568 tggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagactttttagt 634  Q
    ||||||| ||||||  | |||||||||||||||  | || |||||||||| ||||||||||||||||    
T  26336266 tggtattcaaaattctaaggattttaatggattattgtgagtaatggattttgtgagactttttagt 26336332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 528 - 634
Target Start/End: Original strand, 42720877 - 42720983
Alignment:
Q  528 gtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagact 627  Q
    |||||||||| ||||||   | |||||| ||| |||||  ||||||| ||||||  | |||||||||||| ||  | || |||||||||| |||||||||    
T  42720877 gtattcaattgagattttacacaacttaaaaattgtctattggtattcaaaattctaaggattttaatgggttgttgtgagtaatggattttgtgagact 42720976  T
Q  628 ttttagt 634  Q
    |||||||    
T  42720977 ttttagt 42720983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 372 - 417
Target Start/End: Original strand, 40143775 - 40143820
Alignment:
Q  372 ggggcgtattgaattgagatttcaaaggattttaatagactttttt 417  Q
    |||| ||||| ||||||||||||||| |||||||| ||||||||||    
T  40143775 ggggtgtattcaattgagatttcaaaagattttaaaagactttttt 40143820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 372 - 417
Target Start/End: Complemental strand, 42218489 - 42218444
Alignment:
Q  372 ggggcgtattgaattgagatttcaaaggattttaatagactttttt 417  Q
    |||| |||||| ||||||||||||||||||||||| | ||||||||    
T  42218489 ggggtgtattggattgagatttcaaaggattttaaaaaactttttt 42218444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 372 - 417
Target Start/End: Original strand, 45332665 - 45332710
Alignment:
Q  372 ggggcgtattgaattgagatttcaaaggattttaatagactttttt 417  Q
    |||| ||||| |||||||||||||||| ||||||| ||||||||||    
T  45332665 ggggtgtattcaattgagatttcaaagaattttaaaagactttttt 45332710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 372 - 693
Target Start/End: Complemental strand, 12253476 - 12253152
Alignment:
Q  372 ggggcgtattgaattgagatttcaaaggattttaatagacttttttatgaaaagaaaattttt---tattgaatcaagacttttattgaatctaaataaa 468  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||   |||||||||||||||||||| |||||||||||||    
T  12253476 ggggtgtattgaattgagatttcaaaggattttaatagacttttttatgaaaagaaaatctttaggtattgaatcaagacttttatggaatctaaataaa 12253377  T
Q  469 tcatgtggtattcaatcaagacaattaagactttcttttcaagacatcaaaatccatttgtattcaattaagatttctaagaacttataaaatgtctcgt 568  Q
    || | ||||||||||||||||||||||||||||| |||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||| |    
T  12253376 tcttatggtattcaatcaagacaattaagacttttttttcaagacatcaaaatctgttggtattcaattaagatttctaagaacttataaaatgtctcat 12253277  T
Q  569 ggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagactttttagtt-aaatacactcatccaacaatctcaaacaaact 667  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||    
T  12253276 ggtattgaaaattagacgaattttaatggattcatttgtgtaatggattgtgtgagactttttagttaaaatacactcatccaacaatcccacacaaact 12253177  T
Q  668 ctttagattttgtaatactcttccaa 693  Q
    ||| ||| ||| ||||||||||||||    
T  12253176 cttgaga-tttataatactcttccaa 12253152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 372 - 852
Target Start/End: Original strand, 33474517 - 33475000
Alignment:
Q  372 ggggcgtattgaattgagatttcaaaggattttaatagacttttttatgaaaagaaaatttt---ttattgaatcaagacttttattgaatctaaataaa 468  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||||||| | ||||| ||   ||||||||||||||||||||| |||||||||||||    
T  33474517 ggggtgtattgaattgagatttcaaaggattttaatagatttttttatgaacataaaatcttgagttattgaatcaagacttttatggaatctaaataaa 33474616  T
Q  469 tcatgtggtattcaatcaagacaattaagactttctttt----caagacatcaaaatccatttgtattcaattaagatttctaagaacttataaaatgtc 564  Q
    || ||||||||||||||||||||||||||| ||| ||||    |||||||| ||| ||  || |||||||||||||||||||||||||||||||||| ||    
T  33474617 tcttgtggtattcaatcaagacaattaagattttttttttcttcaagacattaaattcg-ttggtattcaattaagatttctaagaacttataaaatatc 33474715  T
Q  565 tcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagactttttagtt-aaatacactcatccaacaatctcaaaca 663  Q
    | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||    
T  33474716 ttgtggtattgaaaattagacggattttaattgattcatttgtgtaatggattgtgtgagactttttagttaaaatacactcatccaacaatctcacaca 33474815  T
Q  664 aactctttagattttgtaatactcttccaannnnnnnnnnnnnnnnnatacgtttcttccaaattcttttctgttctattgtaaccaatgggcaggttat 763  Q
    ||||||| ||||||||||||||||||||||                  |||||||||||||||||||||||||||||| ||||| |||| |||| |||||    
T  33474816 aactcttgagattttgtaatactcttccaaatttttatttttttt---tacgtttcttccaaattcttttctgttctactgtaa-caat-ggcatgttat 33474910  T
Q  764 atattttgtttgg-----ttattgtccaaaatcatcatacctctaaccttgccacttttctaaccataacttttacctttcattaaaaacaaaa 852  Q
    |||||||||||||     ||||||| | |||||||||| ||||||| |||| ||||||||| | ||||||||||| | ||||||||||| ||||    
T  33474911 atattttgtttggcaaacttattgt-cgaaatcatcatgcctctaa-cttg-cacttttcttaacataactttta-cgttcattaaaaaaaaaa 33475000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 435 - 638
Target Start/End: Complemental strand, 46037369 - 46037166
Alignment:
Q  435 tattgaatcaagacttttattgaatctaaataaatcatgtggtattcaatcaagacaattaagactttcttttcaagacatcaaaatccatttgtattca 534  Q
    |||| |||||||||||||||  ||| |||| ||||| |||| ||||||||||||||||| | |||||| |||| ||| || |||||||| || |||||||    
T  46037369 tattcaatcaagacttttataaaatgtaaacaaatcttgtgatattcaatcaagacaatcatgactttttttttaaggcaacaaaatccgttggtattca 46037270  T
Q  535 attaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagactttttagt 634  Q
    ||| |||||||| |  |||||| || |||||  ||||||| |||| |  |  |||||| |||||||| |   || |||||||| ||||||||||||||||    
T  46037269 attgagatttctcatgacttatgaattgtctattggtattcaaaagtctatagattttgatggattcttggatggaatggattttgtgagactttttagt 46037170  T
Q  635 taaa 638  Q
    ||||    
T  46037169 taaa 46037166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 377 - 638
Target Start/End: Complemental strand, 42678274 - 42678009
Alignment:
Q  377 gtattgaattgagatttcaaaggattttaatagacttttttatgaaaagaaaatttttt---attgaatcaagacttttattgaatctaaataaatcatg 473  Q
    |||||||||  |||||||||  |||||||| ||||||||| |||| || ||||| |  |   ||| ||| |||||||||||  ||  ||||||||||       
T  42678274 gtattgaatcaagatttcaagagattttaaaagactttttaatgataaaaaaatctggtgatattcaattaagacttttatgaaacataaataaatctca 42678175  T
Q  474 tggtattcaatcaagacaattaagactttctt-ttcaagacatcaaaatccatttgtattcaattaagatttctaagaacttataaaatgtctcgtggta 572  Q
    |||||||||||||||||||| |||||||| || || | | || | |||| |  | ||||||||||||||||| ||  ||||||||||||||||  |||||    
T  42678174 tggtattcaatcaagacaatcaagacttttttattgagggcaaccaaattccatggtattcaattaagatttgtaccaacttataaaatgtctattggta 42678075  T
Q  573 ttgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagactttttagttaaa 638  Q
    || |||| |   | ||||||||||||||| |||||  |||||||| | ||||||||||||||||||    
T  42678074 ttcaaaaatctgcagattttaatggattcttttgtagaatggattttatgagactttttagttaaa 42678009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 435 - 659
Target Start/End: Complemental strand, 37042582 - 37042358
Alignment:
Q  435 tattgaatcaagacttttattgaatctaaataaatcatgtggtattcaatcaagacaattaagactttcttttcaagacatcaaaatccatttgtattca 534  Q
    |||| |||||||| ||||||  ||||||||| |||  ||||||||||||| | |||||| ||   ||| |||| ||  || | ||||||  | |||||||    
T  37042582 tattcaatcaagatttttataaaatctaaattaattttgtggtattcaattatgacaatcaaattttttttttaaatgcaacgaaatccggtagtattca 37042483  T
Q  535 attaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagactttttagt 634  Q
    |||||||||||| | |||||||||| | |||| ||||||| |||| || |  ||||| |||| |||| || | | |||||||| ||||||| ||||||||    
T  37042482 attaagatttctcacaacttataaattatctcatggtattcaaaaatacatagatttaaatgaattctttggcgaaatggattttgtgaga-tttttagt 37042384  T
Q  635 taaa-tacactcatccaacaatctca 659  Q
    |||| |||| | ||||||||||||||    
T  37042383 taaaatacatttatccaacaatctca 37042358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 712 - 776
Target Start/End: Original strand, 152230 - 152292
Alignment:
Q  712 tacgtttcttccaaattcttttctgttctattgtaaccaatgggcaggttatatattttgtttgg 776  Q
    |||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||    
T  152230 tacgtttcttccaaattcttttctgttctactgtaa-caat-ggcaggttatatattttgtttgg 152292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 377 - 632
Target Start/End: Complemental strand, 34115553 - 34115295
Alignment:
Q  377 gtattgaattgagatttcaaaggattttaatagacttttttatgaaaagaaaatttttta---ttgaatcaagacttttattgaatctaaataaatcatg 473  Q
    |||||||||| | |||||||| |||||||| ||||||||| |||| || ||||| || ||   || ||||||||||||||| |||| ||||||||||       
T  34115553 gtattgaattaaaatttcaaatgattttaaaagactttttaatgataaaaaaatcttgtagtattcaatcaagacttttatggaatataaataaatctca 34115454  T
Q  474 tggtattcaatcaagacaattaagactttcttttcaagacatcaaaatccatttgtattcaattaagatttctaagaacttataaaatgtctcgtggtat 573  Q
    ||||||||||| ||||| || ||   ||| | ||||||  | | |||||   | ||||||||| ||||||| ||  |||||||||||||| |   |||||    
T  34115453 tggtattcaattaagacgatcaaatttttttattcaaggtaaccaaatctcatggtattcaatcaagatttgtaccaacttataaaatgtttataggtat 34115354  T
Q  574 tgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagacttttta 632  Q
    | |||| |     ||||||||||||||| ||||| || |||||| ||||||||||||||    
T  34115353 tcaaaaatctgtagattttaatggattcttttgtatagtggattttgtgagacttttta 34115295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 372 - 635
Target Start/End: Complemental strand, 37649779 - 37649515
Alignment:
Q  372 ggggcgtattgaattgagatttcaaaggattttaatagacttttttatgaaaagaaaatt---ttttattgaatcaagacttttattgaatctaaataaa 468  Q
    |||| |||||||||| |||||||||  |||||||| ||||||||| |||| || ||||||   |  |||| ||| ||||||||||| |||  ||| ||||    
T  37649779 ggggtgtattgaattaagatttcaagagattttaaaagactttttaatgataa-aaaattcggtggtattcaat-aagacttttatagaacataagtaaa 37649682  T
Q  469 tcatgtggtattcaatcaagacaattaagactttcttttcaagacatcaaaatccatttgtattcaattaagatttctaagaacttataaaatgtctcgt 568  Q
    ||   |||||||||||||| ||||| |||| ||| | |||||| || | ||||||  | |||||| ||| |||||||||  ||||||||||||||||  |    
T  37649681 tctcatggtattcaatcaacacaatcaagattttttattcaaggcaaccaaatcccatggtattcgattgagatttctaccaacttataaaatgtctatt 37649582  T
Q  569 ggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagactttttagtt 635  Q
    |||||| |||| |      ||||||| |||||| |||||  | |||||| |||||||||||||||||    
T  37649581 ggtattcaaaaatcttaaaattttaacggattcttttgtagagtggattttgtgagactttttagtt 37649515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 712 - 776
Target Start/End: Complemental strand, 43057386 - 43057324
Alignment:
Q  712 tacgtttcttccaaattcttttctgttctattgtaaccaatgggcaggttatatattttgtttgg 776  Q
    |||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||    
T  43057386 tacgtttcttccaaattcttttctgttctactgtaa-caat-ggcaggttatatattttgtttgg 43057324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 712 - 847
Target Start/End: Complemental strand, 47914041 - 47913907
Alignment:
Q  712 tacgtttcttccaaattcttttctgttctattgtaaccaatgggcaggttatatattttgtttgg-----ttattgtccaaaatcatcatacctctaacc 806  Q
    |||||||||||||||||||||||||||||| ||||| |||| || ||||||||||||||||||||     ||||||| | |||||||||| ||||||| |    
T  47914041 tacgtttcttccaaattcttttctgttctactgtaa-caat-ggtaggttatatattttgtttggcaaacttattgt-cgaaatcatcatgcctctaa-c 47913946  T
Q  807 ttgccacttttctaaccataacttttacctttcattaaaaa 847  Q
    ||| ||||||||| | ||||||||||| | |||||||||||    
T  47913945 ttg-cacttttcttaacataactttta-cgttcattaaaaa 47913907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 519 - 638
Target Start/End: Original strand, 3634353 - 3634472
Alignment:
Q  519 aatccatttgtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggattg 618  Q
    ||||| || ||||||||||||||||||| | |||||||||||||| |  ||||||| |||| |  |  |||||| |||||||| ||| || ||||||||     
T  3634353 aatccgttggtattcaattaagatttctcacaacttataaaatgtattttggtattcaaaaattaattgattttgatggattcttttatggaatggattt 3634452  T
Q  619 tgtgagactttttagttaaa 638  Q
    || |||||||||||||||||    
T  3634453 tgagagactttttagttaaa 3634472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 456 - 543
Target Start/End: Original strand, 21067020 - 21067107
Alignment:
Q  456 gaatctaaataaatcatgtggtattcaatcaagacaattaagactttcttttcaagacatcaaaatccatttgtattcaattaagatt 543  Q
    |||| |||||||||| |||||||||||||||||||||| |||||||| | || ||| || | ||||||  | |||||||||| |||||    
T  21067020 gaatataaataaatcttgtggtattcaatcaagacaatcaagactttttattaaaggcaacgaaatccggtggtattcaattgagatt 21067107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 435 - 561
Target Start/End: Complemental strand, 9599084 - 9598958
Alignment:
Q  435 tattgaatcaagacttttattgaatctaaataaatcatgtggtattcaatcaagacaattaagactttcttttcaagacatcaaaatccatttgtattca 534  Q
    |||| |||||||| ||||||  ||| |||||||||| ||| ||||||||| |||| ||| || ||||| ||||| |  || | |||||| || ||| |||    
T  9599084 tattcaatcaagaattttataaaatttaaataaatcttgttgtattcaattaagataatcaaaactttgttttcgatgcaacgaaatccgttagtagtca 9598985  T
Q  535 attaagatttctaagaacttataaaat 561  Q
    |||| ||||||| | ||||||||||||    
T  9598984 attatgatttctcacaacttataaaat 9598958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 435 - 561
Target Start/End: Complemental strand, 9826655 - 9826529
Alignment:
Q  435 tattgaatcaagacttttattgaatctaaataaatcatgtggtattcaatcaagacaattaagactttcttttcaagacatcaaaatccatttgtattca 534  Q
    |||| |||||||| ||||||  ||| |||||||||| ||| ||||||||| |||| ||| || ||||| ||||| |  || | |||||| || ||| |||    
T  9826655 tattcaatcaagaattttataaaatttaaataaatcttgttgtattcaattaagataatcaaaactttgttttcgatgcaacgaaatccgttagtagtca 9826556  T
Q  535 attaagatttctaagaacttataaaat 561  Q
    |||| ||||||| | ||||||||||||    
T  9826555 attatgatttctcacaacttataaaat 9826529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 372 - 417
Target Start/End: Original strand, 151857 - 151902
Alignment:
Q  372 ggggcgtattgaattgagatttcaaaggattttaatagactttttt 417  Q
    |||| |||||| ||||||||||||||||||||||| ||||||||||    
T  151857 ggggtgtattggattgagatttcaaaggattttaaaagactttttt 151902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 372 - 417
Target Start/End: Original strand, 40097093 - 40097138
Alignment:
Q  372 ggggcgtattgaattgagatttcaaaggattttaatagactttttt 417  Q
    |||| ||||| |||||||||||||||||||||||| ||||||||||    
T  40097093 ggggtgtattcaattgagatttcaaaggattttaaaagactttttt 40097138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 712 - 748
Target Start/End: Original strand, 30111180 - 30111216
Alignment:
Q  712 tacgtttcttccaaattcttttctgttctattgtaac 748  Q
    |||||||||||||||||||||||||||||| ||||||    
T  30111180 tacgtttcttccaaattcttttctgttctactgtaac 30111216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 712 - 833
Target Start/End: Complemental strand, 12253128 - 12253007
Alignment:
Q  712 tacgtttcttccaaattcttttctgttctattgtaaccaatgggcaggttatatattttgtttgg-----ttattgtccaaaatcatcatacctctaacc 806  Q
    |||||||||| ||||||||||||||||||| | ||| |||| |||| ||||||||||||||| ||     ||||||| |||||||||||| ||||||||     
T  12253128 tacgtttctttcaaattcttttctgttctactataa-caat-ggcaagttatatattttgttcggcaaacttattgt-caaaatcatcatgcctctaac- 12253033  T
Q  807 ttgccacttttctaaccataactttta 833  Q
     |  ||||||||| | |||||||||||    
T  12253032 -ttacacttttcttaacataactttta 12253007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 587 - 638
Target Start/End: Original strand, 32630915 - 32630966
Alignment:
Q  587 gattttaatggattcatttgtgtaatggattgtgtgagactttttagttaaa 638  Q
    ||||||||||||||| ||  | ||||||||| ||||||||||||||||||||    
T  32630915 gattttaatggattccttgatataatggattttgtgagactttttagttaaa 32630966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 435 - 502
Target Start/End: Original strand, 41060050 - 41060117
Alignment:
Q  435 tattgaatcaagacttttattgaatctaaataaatcatgtggtattcaatcaagacaattaagacttt 502  Q
    |||| |||||||| ||||||| ||| |||||||||| |||||||||||||| ||| ||| | ||||||    
T  41060050 tattcaatcaagatttttattaaatataaataaatcttgtggtattcaatccagataatcatgacttt 41060117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 712 - 741
Target Start/End: Complemental strand, 27418352 - 27418323
Alignment:
Q  712 tacgtttcttccaaattcttttctgttcta 741  Q
    ||||||||||||||||||||||||||||||    
T  27418352 tacgtttcttccaaattcttttctgttcta 27418323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 384 - 417
Target Start/End: Complemental strand, 27418715 - 27418682
Alignment:
Q  384 attgagatttcaaaggattttaatagactttttt 417  Q
    ||||||||||||||||||||||| ||||||||||    
T  27418715 attgagatttcaaaggattttaaaagactttttt 27418682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 384 - 417
Target Start/End: Complemental strand, 43057754 - 43057721
Alignment:
Q  384 attgagatttcaaaggattttaatagactttttt 417  Q
    ||||||||||||||||||||||| ||||||||||    
T  43057754 attgagatttcaaaggattttaaaagactttttt 43057721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 372 - 417
Target Start/End: Complemental strand, 47915142 - 47915097
Alignment:
Q  372 ggggcgtattgaattgagatttcaaaggattttaatagactttttt 417  Q
    |||| |||||| |||||||||||| |||||||||| ||||||||||    
T  47915142 ggggtgtattggattgagatttcataggattttaaaagactttttt 47915097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 372 - 693
Target Start/End: Complemental strand, 21736690 - 21736365
Alignment:
Q  372 ggggcgtattgaattgagatttcaaaggattttaatagacttttttatgaaaagaaaattttt---tattgaatcaagacttttattgaatctaaataaa 468  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    ||||||||||| ||||||||  ||||||||||||    
T  21736690 ggggtgtattgaattgagatttcaaaggattttaatagacttttttatgaaaagaaaatcttgaggtattgaatcaatacttttatgaaatctaaataaa 21736591  T
Q  469 tcatgtggtattcaatcaagacaattaagactttcttttcaagacatcaaaatccatttgtattcaattaagatttctaagaacttataaaatgtctcgt 568  Q
    || ||| ||||||||||||||||||| ||||||| |||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||    
T  21736590 tcttgttgtattcaatcaagacaatttagacttttttttcaagacatcaaaatccgttggtattcaattaagatttctaagaatttataaaatgtctcgt 21736491  T
Q  569 ggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagactttttagtt-aaatacactcatccaacaatctcaaacaaact 667  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||| |||||||    
T  21736490 ggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagactttttagttaaaataaactcatctaacaatctcacacaaact 21736391  T
Q  668 ctttagattttgtaatactcttccaa 693  Q
    ||| ||||||||||||||||||||||    
T  21736390 cttcagattttgtaatactcttccaa 21736365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 371 - 693
Target Start/End: Complemental strand, 7488215 - 7487890
Alignment:
Q  371 aggggcgtattgaattgagatttcaaaggattttaatagacttttttatgaaaagaaaatttttt---attgaatcaagacttttattgaatctaaataa 467  Q
    ||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||| || |   |||||||||||||||||||  |||||||||||    
T  7488215 aggggtgtattgaattgagatttcaaataattttaatagacttttttatgaaaagaaaatcttgtggtattgaatcaagacttttatgaaatctaaataa 7488116  T
Q  468 atcatgtggtattcaatcaagacaattaagactttcttttcaagacatcaaaatccatttgtattcaattaagatttctaagaacttataaaatgtctcg 567  Q
    ||| ||||||||||||||||||||||||||||||| |||| ||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||    
T  7488115 atcttgtggtattcaatcaagacaattaagactttttttt-aagacatcaaaattcgttggtattcaattaagatttctaagaacttataaaatgtctcg 7488017  T
Q  568 tggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagactttttagtt-aaatacactcatccaacaatctcaaacaaac 666  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||| |||||     
T  7488016 tggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagactttttagttaaaataaactcatccaacaatttcacacaaaa 7487917  T
Q  667 tctttagattttgtaatactcttccaa 693  Q
    |||| ||||||||||||||||||||||    
T  7487916 tcttgagattttgtaatactcttccaa 7487890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 392 - 693
Target Start/End: Complemental strand, 35172704 - 35172398
Alignment:
Q  392 ttcaaaggattttaatagacttttttatgaaaagaaaattttt---tattgaatcaagacttttattgaatctaaataaatcatgtggtattcaatcaag 488  Q
    ||||||||||||||||||||||||||||||||||||||| ||    |||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  35172704 ttcaaaggattttaatagacttttttatgaaaagaaaatcttgaggtattgaatcaagacttttatggaatctaaataaatcttgtggtattcaatcaag 35172605  T
Q  489 acaattaagactttctttt-caagacatcaaaatccatttgtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacgg 587  Q
    |||||||||||||| |||| |||||||||||||||| || ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  35172604 acaattaagactttttttttcaagacatcaaaatccgttggtattcaattaagatttataagaacttataaaatgtttcgtggtattgaaaattagacgg 35172505  T
Q  588 attttaatggattcatttgtgtaatggattgtgtgagactttttagtt-aaatacactcatccaacaatctcaaacaaactctttagattttgtaatact 686  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||| |||||||||||||||    
T  35172504 attttaatggattcatttgtgtaatggattgtgtgagactttttagttaaaatacactcttccaacaatctcacacaaactcttgagattttgtaatact 35172405  T
Q  687 cttccaa 693  Q
    |||||||    
T  35172404 cttccaa 35172398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 435 - 688
Target Start/End: Complemental strand, 36598486 - 36598233
Alignment:
Q  435 tattgaatcaagacttttattgaatctaaataaatcatgtggtattcaatcaagacaattaagactttcttttcaagacatcaaaatccatttgtattca 534  Q
    |||| |||||||||||||||  ||| |||||||||  |||||||||||||||||| ||| |||||||| |||| || ||| | |||||| || |||||||    
T  36598486 tatttaatcaagacttttataaaatttaaataaatattgtggtattcaatcaagataatcaagacttt-ttttaaatacaacgaaatccgttggtattca 36598388  T
Q  535 attaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagactttttagt 634  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||||  |||||||||| |||||| |||| ||| ||||||||||||||||||| |    
T  36598387 attaagatttctaggaacttataaaatgtctcttggtattgaaaattagagagattttaatgaattcatctgtgaaatagattgtgtgagactttttatt 36598288  T
Q  635 t-aaatacactcatccaacaatctcaaacaaactctttagattttgtaatactct 688  Q
    | ||||| |||||||||||||||||| |||||||||| | ||||||| |||||||    
T  36598287 taaaataaactcatccaacaatctcacacaaactcttgaaattttgtgatactct 36598233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 473 - 638
Target Start/End: Complemental strand, 14920604 - 14920439
Alignment:
Q  473 gtggtattcaatcaagacaattaagactttcttttcaagacatcaaaatccatttgtattcaattaagatttctaagaacttataaaatgtctcgtggta 572  Q
    ||||||||||||||||||||| |||||||| |||| || ||| | |||||| || |||||||||| ||||||||| |||||||||||||||||| |||||    
T  14920604 gtggtattcaatcaagacaatcaagacttttttttaaatacaacgaaatccgttggtattcaattgagatttctaggaacttataaaatgtctcttggta 14920505  T
Q  573 ttgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagactttttagttaaa 638  Q
    ||||||||||||  |||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  14920504 ttgaaaattagagagattttaatggattcatttgtggaatagattgtgtgagactttttagttaaa 14920439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 98; E-Value: 9e-48
Query Start/End: Original strand, 377 - 654
Target Start/End: Original strand, 16146823 - 16147108
Alignment:
Q  377 gtattgaattgagatttcaaagga-ttttaatagacttttttatgaaaagaaaatttttt---attgaatcaagacttttattgaatctaaataaatcat 472  Q
    ||||||||||||||||| |||| | ||||||| ||| ||||||||| || | |  |||||   ||| |||||||||||||||  ||| || ||||||  |    
T  16146823 gtattgaattgagattttaaagaaattttaatggacatttttatgataacatagctttttcgtattcaatcaagacttttataaaatttatataaatttt 16146922  T
Q  473 gtggtattcaatcaagacaattaagactttctttt---caagacatcaaaatccatttgtattcaattaagatttctaagaacttataaaatgtctcgtg 569  Q
    |||||||||||| ||||||||||| ||||| ||||   |||| || | |||||| ||   |||||||| |||||||||||||||| ||||||||||  ||    
T  16146923 gtggtattcaattaagacaattaacactttttttttttcaagccaacgaaatccgttgacattcaattgagatttctaagaacttttaaaatgtctgttg 16147022  T
Q  570 gtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagactttttagtt-aaatacactcatccaacaa 654  Q
    | ||||||||||| |||||||||||| ||||||||| || ||||||||||||||||||||||| || |||||||||||||||||||    
T  16147023 ggattgaaaattaaacggattttaatagattcatttatggaatggattgtgtgagactttttaattaaaatacactcatccaacaa 16147108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 388 - 654
Target Start/End: Original strand, 16155425 - 16155694
Alignment:
Q  388 agatttcaaaggattttaatagacttttttatgaaaagaaaatttttt---attgaatcaagacttttattgaatctaaataaatcatgtggtattcaat 484  Q
    |||| |||||||||||||||||||||| |||||| |||| | |  | |   ||| |||||| ||||||||  ||| || ||||||  |||||||||||||    
T  16155425 agatatcaaaggattttaatagactttattatgataagatagtcgtgtggtattcaatcaaaacttttataaaatttatataaattttgtggtattcaat 16155524  T
Q  485 caagacaattaagactttcttttcaagacatcaaaatccatttgtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattaga 584  Q
     ||||||||||||||||| |||||||  || | |||||| || | |||||||| ||||||||||||| || |||||||| || |||||||||| |||| |    
T  16155525 taagacaattaagacttt-ttttcaaagcaacgaaatccgttggcattcaattgagatttctaagaaattttaaaatgtttcttggtattgaatattaaa 16155623  T
Q  585 cggattttaatggattcatttgtgtaatggattgtgtgagactttttagtt-aaatacactcatccaacaa 654  Q
     ||||||||||| |||||||| || ||| ||||||||||||||||||| || |||||||| ||||||||||    
T  16155624 tggattttaatgaattcatttatggaattgattgtgtgagactttttaattaaaatacacgcatccaacaa 16155694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 372 - 546
Target Start/End: Original strand, 2288460 - 2288634
Alignment:
Q  372 ggggcgtattgaattgagatttcaaaggattttaatagacttttttatgaaaagaaaattttt-tattgaatcaagacttttattgaatctaaataaatc 470  Q
    |||| |||||||||||||| ||||| ||||||||| |||||||||||| | || |   |  |  |||| |||||||||||||||  ||| |||| |||||    
T  2288460 ggggtgtattgaattgagaattcaagggattttaaaagacttttttattataaaagtctagtggtattcaatcaagacttttataaaatgtaaacaaatc 2288559  T
Q  471 atgtggtattcaatcaagacaattaagactttcttttcaagacatcaaaatccatttgtattcaattaagatttct 546  Q
     ||||||||||||| |||||||| | |||||| |||| ||| || |||||||| || |||||||||||||||||||    
T  2288560 ttgtggtattcaattaagacaatcatgacttt-tttttaaggcaacaaaatccgttggtattcaattaagatttct 2288634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 712 - 847
Target Start/End: Original strand, 29941324 - 29941458
Alignment:
Q  712 tacgtttcttccaaattcttttctgttctattgtaaccaatgggcaggttatatattttgtttgg-----ttattgtccaaaatcatcatacctctaacc 806  Q
    |||||||||||||||||||||||||||||| ||||| |||| |||| ||||||||||||||||||     ||||||| | |||||||||| ||||||| |    
T  29941324 tacgtttcttccaaattcttttctgttctactgtaa-caat-ggcatgttatatattttgtttggcaaacttattgt-cgaaatcatcatgcctctaa-c 29941419  T
Q  807 ttgccacttttctaaccataacttttacctttcattaaaaa 847  Q
    ||| ||||||||| | ||||||||||| | |||||||||||    
T  29941420 ttg-cacttttcttaacataactttta-cgttcattaaaaa 29941458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 377 - 638
Target Start/End: Complemental strand, 18176549 - 18176285
Alignment:
Q  377 gtattgaattgagatttcaaaggattttaatagacttttttatgaaaagaaaatttttt---attgaatcaagacttttattgaatctaaataaatcatg 473  Q
    |||||||||| |||||| || ||||||||| ||| ||||| || | || ||||| || |   ||| |||||||||||||||  ||  ||||||||||       
T  18176549 gtattgaattaagatttgaagggattttaaaagattttttaataataaaaaaatcttgtggtattcaatcaagacttttataaaacataaataaatctca 18176450  T
Q  474 tggtattcaatcaagacaattaagactttcttttcaagacatcaaaatccatttgtattcaattaagatttctaagaacttataaaatgtctcgtggtat 573  Q
    ||||||| |||||||||||| |||| ||| | |||||| ||   || |||  | |||||||||| ||||||   | | ||||||||||||||  ||||||    
T  18176449 tggtattgaatcaagacaatcaagattttttattcaaggcaatcaattcccatggtattcaattgagattttataaatcttataaaatgtctattggtat 18176350  T
Q  574 tgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagactttttagttaaa 638  Q
    | ||||||     |||||||||||||||  ||||  | |||||| ||||||||||||||||||||    
T  18176349 tcaaaattcttgagattttaatggattctattgtagagtggattttgtgagactttttagttaaa 18176285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 377 - 489
Target Start/End: Complemental strand, 3858266 - 3858151
Alignment:
Q  377 gtattgaattgagatttcaaaggattttaatagacttttttatgaaaagaaaatttttt---attgaatcaagacttttattgaatctaaataaatcatg 473  Q
    |||||||||| |||||| || ||||||||| ||||||||| |||| || ||| ||||||   ||| ||||||||||||||| |||| ||||||||||       
T  3858266 gtattgaattaagattttaagggattttaaaagactttttaatgataaaaaacttttttggtattcaatcaagacttttatagaatataaataaatctca 3858167  T
Q  474 tggtattcaatcaaga 489  Q
    || |||||||||||||    
T  3858166 tgatattcaatcaaga 3858151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 712 - 776
Target Start/End: Complemental strand, 6289218 - 6289156
Alignment:
Q  712 tacgtttcttccaaattcttttctgttctattgtaaccaatgggcaggttatatattttgtttgg 776  Q
    ||||||| |||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||    
T  6289218 tacgtttattccaaattcttttctgttctactgtaa-caat-ggcaggttatatattttgtttgg 6289156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 517 - 634
Target Start/End: Complemental strand, 34028869 - 34028752
Alignment:
Q  517 aaaatccatttgtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggat 616  Q
    |||||||| | |||||||||| ||||||   | |||||| ||| |||||  ||||||| ||||||| | |||||||||||||||  |  | |||||||||    
T  34028869 aaaatccagtggtattcaattcagattttgcacaacttaaaaattgtctattggtattcaaaattataaggattttaatggattgttacgagtaatggat 34028770  T
Q  617 tgtgtgagactttttagt 634  Q
    | ||||||||||||||||    
T  34028769 tttgtgagactttttagt 34028752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 528 - 634
Target Start/End: Complemental strand, 24193412 - 24193306
Alignment:
Q  528 gtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagact 627  Q
    |||||||||| ||||||   | |||||| ||| |||||  ||||||| ||||||  | |||||||||||||||  | || |||||||||| |||||||||    
T  24193412 gtattcaattgagattttgcacaacttaaaaattgtctattggtattcaaaattgtaaggattttaatggattgttgtgagtaatggattttgtgagact 24193313  T
Q  628 ttttagt 634  Q
    |||||||    
T  24193312 ttttagt 24193306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 372 - 417
Target Start/End: Original strand, 11534834 - 11534879
Alignment:
Q  372 ggggcgtattgaattgagatttcaaaggattttaatagactttttt 417  Q
    |||| ||||| |||||||||||||||||||||||| ||||||||||    
T  11534834 ggggtgtattcaattgagatttcaaaggattttaaaagactttttt 11534879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 517 - 634
Target Start/End: Original strand, 11534982 - 11535099
Alignment:
Q  517 aaaatccatttgtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggat 616  Q
    |||||||| | | |||||||| ||||||   | |||||| ||| |||||  ||||||| ||||||  | |||||||||||||||  | || |||||||||    
T  11534982 aaaatccagtggaattcaattgagattttgcacaacttaaaaattgtctattggtattcaaaattgtaaggattttaatggattgttgtgagtaatggat 11535081  T
Q  617 tgtgtgagactttttagt 634  Q
    | ||||||||||||||||    
T  11535082 tttgtgagactttttagt 11535099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 372 - 417
Target Start/End: Complemental strand, 20157842 - 20157797
Alignment:
Q  372 ggggcgtattgaattgagatttcaaaggattttaatagactttttt 417  Q
    |||| ||||| |||||||||||||||||||||||| ||||||||||    
T  20157842 ggggtgtattcaattgagatttcaaaggattttaaaagactttttt 20157797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 377 - 417
Target Start/End: Original strand, 29940949 - 29940989
Alignment:
Q  377 gtattgaattgagatttcaaaggattttaatagactttttt 417  Q
    |||||| ||||||||||||||||||||||| ||||||||||    
T  29940949 gtattggattgagatttcaaaggattttaaaagactttttt 29940989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 712 - 775
Target Start/End: Complemental strand, 7487866 - 7487805
Alignment:
Q  712 tacgtttcttccaaattcttttctgttctattgtaaccaatgggcaggttatatattttgtttg 775  Q
    ||||||||||| |||||||||||||||||| ||||| |||| | ||| ||||||||||||||||    
T  7487866 tacgtttcttcaaaattcttttctgttctactgtaa-caat-gacagattatatattttgtttg 7487805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 378 - 417
Target Start/End: Complemental strand, 11998496 - 11998457
Alignment:
Q  378 tattgaattgagatttcaaaggattttaatagactttttt 417  Q
    |||| |||||||||||||||||||||||| ||||||||||    
T  11998496 tattcaattgagatttcaaaggattttaaaagactttttt 11998457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 528 - 634
Target Start/End: Complemental strand, 11998343 - 11998237
Alignment:
Q  528 gtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagact 627  Q
    |||||||||| ||||||   | |||||| ||| |||||  ||||||| ||||||  | |||||||||||| ||  | || |||||||||| |||||||||    
T  11998343 gtattcaattgagattttacacaacttaaaaattgtctattggtattcaaaattctaaggattttaatggtttgttgtgagtaatggattttgtgagact 11998244  T
Q  628 ttttagt 634  Q
    |||||||    
T  11998243 ttttagt 11998237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 372 - 417
Target Start/End: Complemental strand, 6289584 - 6289539
Alignment:
Q  372 ggggcgtattgaattgagatttcaaaggattttaatagactttttt 417  Q
    |||| |||||| ||||||||||||||||||||||| | ||||||||    
T  6289584 ggggtgtattggattgagatttcaaaggattttaaaaaactttttt 6289539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 478 - 579
Target Start/End: Complemental strand, 10441598 - 10441497
Alignment:
Q  478 attcaatcaagacaattaagactttcttttcaagacatcaaaatccatttgtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaa 577  Q
    ||||||| |||||||||| ||||||  ||||||| || | || ||| || ||||||||||||||||||| |  | ||||||| |||||  ||||||| ||    
T  10441598 attcaattaagacaattatgacttttatttcaaggcaaccaattccgttggtattcaattaagatttctcatgatttataaattgtctgttggtattcaa 10441499  T
Q  578 aa 579  Q
    ||    
T  10441498 aa 10441497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 372 - 421
Target Start/End: Complemental strand, 14920666 - 14920617
Alignment:
Q  372 ggggcgtattgaattgagatttcaaaggattttaatagacttttttatga 421  Q
    |||| |||||| |||| ||||| |||||||||||| ||||||||||||||    
T  14920666 ggggtgtattggattgtgattttaaaggattttaaaagacttttttatga 14920617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 435 - 484
Target Start/End: Original strand, 43022570 - 43022619
Alignment:
Q  435 tattgaatcaagacttttattgaatctaaataaatcatgtggtattcaat 484  Q
    |||| ||||||||||||||| |||| |||| ||||| |||||||||||||    
T  43022570 tattaaatcaagacttttatagaatgtaaagaaatcttgtggtattcaat 43022619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 225; Significance: 1e-123; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 371 - 693
Target Start/End: Complemental strand, 3604539 - 3604214
Alignment:
Q  371 aggggcgtattgaattgagatttcaaaggattttaatagacttttttatgaaaagaaaattttt---tattgaatcaagacttttattgaatctaaataa 467  Q
    ||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||    ||||||||||| ||||||||  |||||||||||    
T  3604539 aggggtgtattgaattgagatttcaaatgattttaatagactttcttatgaaaagaaaatcttgaggtattgaatcaaaacttttatgaaatctaaataa 3604440  T
Q  468 atcatgtggtattcaatcaagacaattaagactttcttttcaagacatcaaaatccatttgtattcaattaagatttctaagaacttataaaatgtctcg 567  Q
    ||| ||||||||||||||||||||||||||||||| | |||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||    
T  3604439 atcttgtggtattcaatcaagacaattaagactttttattcaagacatcaaaatccgttggtattcaattaagatttttaagaacttataaaatgtctcg 3604340  T
Q  568 tggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagactttttagttaaa-tacactcatccaacaatctcaaacaaac 666  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||    
T  3604339 tggtattgaaaattagacagattttaatggattcatttgcgtaatggattgtgtgagactttt-agttaaaatacactcatccaacaatctcacacaaac 3604241  T
Q  667 tctttagattttgtaatactcttccaa 693  Q
    |||| ||||||||||||||||||||||    
T  3604240 tcttgagattttgtaatactcttccaa 3604214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 386 - 679
Target Start/End: Original strand, 378245 - 378543
Alignment:
Q  386 tgagatttcaaaggattttaatagactttttt-atga-aaagaaaattttt--tattgaatcaagacttttattgaatctaaataaatcatgtggtattc 481  Q
    ||||||||||||||||||||||||| |||||| |||| ||||||   || |  |||| ||||||||||| |||  |||||||||||||| ||| ||||||    
T  378245 tgagatttcaaaggattttaatagattttttttatgataaagaagtcttgtggtattcaatcaagacttctataaaatctaaataaatcttgtagtattc 378344  T
Q  482 aatcaagacaattaagactttcttttcaagacatcaaaatccatttgtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaatt 581  Q
    |||||| ||||| |||||||| ||||||||||| | ||||   || |||||||||| ||||||||||||||||||||||||||||  | | |||||||||    
T  378345 aatcaaaacaatcaagacttttttttcaagacaacgaaatatgttggtattcaattgagatttctaagaacttataaaatgtctctcgatgttgaaaatt 378444  T
Q  582 agacggattttaatggattcatttgtgtaatggattgtgtgagactttttagtt-aaatacactcatccaacaatctcaaacaaactctttagattttg 679  Q
     ||  ||||||||||||||| | | || |||||||||||||| ||||||||||| ||||| |||||||||||||||||| | |||||||| ||||||||    
T  378445 tgatagattttaatggattcttctatggaatggattgtgtgaaactttttagttgaaatatactcatccaacaatctcacataaactcttgagattttg 378543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 377 - 638
Target Start/End: Complemental strand, 2276285 - 2276021
Alignment:
Q  377 gtattgaattgagatttcaaaggattttaatagacttttttatgaaaagaaaatttttt---attgaatcaagacttttattgaatctaaataaatcatg 473  Q
    |||||||||||||| ||||| ||||||||| || ||||||||| | || |||||||  |   ||| |||||||||||||||  ||| |||||||||| ||    
T  2276285 gtattgaattgagaattcaagggattttaaaagtcttttttataataaaaaaatttagtggtattcaatcaagacttttataaaatgtaaataaatcttg 2276186  T
Q  474 tggtattcaatcaagacaattaagactttcttttcaagacatcaaaatccatttgtattcaattaagatttctaagaacttataaaatgtctcgtggtat 573  Q
    ||||||||||| || ||||| | || ||| |||| ||| || |||||| | || |||||||||||| |||||| |  |||||| || |||||  || |||    
T  2276185 tggtattcaattaaaacaatcatgattttttttttaaggcaacaaaattcgttggtattcaattaaaatttctcatgacttatgaattgtctattgatat 2276086  T
Q  574 tgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagactttttagttaaa 638  Q
    | |||| |  |  ||||||||||||||| ||||| ||||||||| ||||||| ||||||||||||    
T  2276085 tcaaaagtctatagattttaatggattcttttgtataatggattttgtgagattttttagttaaa 2276021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 435 - 638
Target Start/End: Complemental strand, 28594461 - 28594257
Alignment:
Q  435 tattgaatcaagacttttattgaatctaaataaatcatgtggtattcaatcaagacaattaagactttctttt-caagacatcaaaatccatttgtattc 533  Q
    |||| |||||||| ||||||  ||  |||||||||| ||||||||| ||| |||||||| | |||||| |||| ||| ||| | |||||| || ||||||    
T  28594461 tattcaatcaagatttttataaaacataaataaatcttgtggtatttaattaagacaatcatgactttttttttcaatacaacgaaatccgttggtattc 28594362  T
Q  534 aattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagactttttag 633  Q
    ||||| ||||||| | ||||||||||||||||   |||||| |||| | ||  ||||||||||||||| ||| | ||||||||| |||||||||||||||    
T  28594361 aattaggatttctcacaacttataaaatgtctttcggtattcaaaaattgatagattttaatggattcttttatataatggattttgtgagactttttag 28594262  T
Q  634 ttaaa 638  Q
    |||||    
T  28594261 ttaaa 28594257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 435 - 565
Target Start/End: Complemental strand, 26806595 - 26806465
Alignment:
Q  435 tattgaatcaagacttttattgaatctaaataaatcatgtggtattcaatcaagacaattaagactttcttttcaagacatcaaaatccatttgtattca 534  Q
    |||| |||||||||||||||  ||| |||||||||| ||| ||||||||| |||||||| |||||||| |||||||  || | ||||||||| |||||||    
T  26806595 tattcaatcaagacttttataaaatataaataaatcttgtagtattcaattaagacaatcaagacttttttttcaatgcaacgaaatccattggtattca 26806496  T
Q  535 attaagatttctaagaacttataaaatgtct 565  Q
    |||| ||||||| | ||||||||||||||||    
T  26806495 attaggatttctcacaacttataaaatgtct 26806465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 435 - 565
Target Start/End: Complemental strand, 26795531 - 26795401
Alignment:
Q  435 tattgaatcaagacttttattgaatctaaataaatcatgtggtattcaatcaagacaattaagactttcttttcaagacatcaaaatccatttgtattca 534  Q
    |||| |||||| ||||||||  ||| |||||||||| ||| ||||||||| |||||||| |||||||| |||||||  || | ||||||||| |||||||    
T  26795531 tattcaatcaaaacttttataaaatataaataaatcttgtagtattcaattaagacaatcaagacttttttttcaatgcaacgaaatccattggtattca 26795432  T
Q  535 attaagatttctaagaacttataaaatgtct 565  Q
    |||| ||||||| | ||||||||||||||||    
T  26795431 attaggatttctcacaacttataaaatgtct 26795401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 461 - 638
Target Start/End: Original strand, 27786295 - 27786471
Alignment:
Q  461 taaataaatcatgtggtattcaatcaagacaattaagactttcttttcaagacatcaaaatccatttgtattcaattaagatttctaagaacttataaaa 560  Q
    |||||||||| ||||||||||||| |||||||| | |||||| ||||||| | | | |||||| |   |||||||||| ||||||| | |||||||||||    
T  27786295 taaataaatcttgtggtattcaattaagacaatcatgacttt-ttttcaatataacgaaatccgtcattattcaattatgatttctcacaacttataaaa 27786393  T
Q  561 tgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagactttttagttaaa 638  Q
    ||||    |||||| |||| | ||  ||||||||||||||| ||| || |||||||| ||||||||||||||||||||    
T  27786394 tgtcattcggtattcaaaaattgatagattttaatggattcttttatggaatggattttgtgagactttttagttaaa 27786471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 385 - 484
Target Start/End: Complemental strand, 26795705 - 26795603
Alignment:
Q  385 ttgagatttcaaaggattttaatagacttttttatgaaaagaaaatttt---ttattgaatcaagacttttattgaatctaaataaatcatgtggtattc 481  Q
    |||||||||||| ||||||||| |||||||||||| | || ||||| ||    |||| |||||||||||||||  ||| |||||||||| ||||||||||    
T  26795705 ttgagatttcaagggattttaaaagacttttttattataaaaaaatcttgtggtattcaatcaagacttttataaaatataaataaatcttgtggtattc 26795606  T
Q  482 aat 484  Q
    |||    
T  26795605 aat 26795603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 385 - 484
Target Start/End: Complemental strand, 26806769 - 26806667
Alignment:
Q  385 ttgagatttcaaaggattttaatagacttttttatgaaaagaaaatttt---ttattgaatcaagacttttattgaatctaaataaatcatgtggtattc 481  Q
    |||||||||||| ||||||||| |||||||||||| | || ||||| ||    |||| |||||||||||||||  ||| |||||||||| ||||||||||    
T  26806769 ttgagatttcaagggattttaaaagacttttttattataaaaaaatcttgtgatattcaatcaagacttttataaaatataaataaatcttgtggtattc 26806670  T
Q  482 aat 484  Q
    |||    
T  26806669 aat 26806667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 712 - 847
Target Start/End: Original strand, 40410968 - 40411102
Alignment:
Q  712 tacgtttcttccaaattcttttctgttctattgtaaccaatgggcaggttatatattttgtttgg-----ttattgtccaaaatcatcatacctctaacc 806  Q
    |||||||||||||||||||||||| ||||| ||||| |||| | |||||||||||||||||||||     ||||||| | |||||||||| ||||||| |    
T  40410968 tacgtttcttccaaattcttttctattctactgtaa-caat-gacaggttatatattttgtttggcaaacttattgt-cgaaatcatcatgcctctaa-c 40411063  T
Q  807 ttgccacttttctaaccataacttttacctttcattaaaaa 847  Q
    ||| ||||||||| | ||||||||||| | |||||||||||    
T  40411064 ttg-cacttttcttaacataactttta-cgttcattaaaaa 40411102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 712 - 776
Target Start/End: Complemental strand, 13950507 - 13950445
Alignment:
Q  712 tacgtttcttccaaattcttttctgttctattgtaaccaatgggcaggttatatattttgtttgg 776  Q
    |||||||||| ||||||||||||||||||| ||||| |||| ||||| |||||||||||||||||    
T  13950507 tacgtttctttcaaattcttttctgttctactgtaa-caat-ggcagattatatattttgtttgg 13950445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 712 - 775
Target Start/End: Complemental strand, 3604180 - 3604119
Alignment:
Q  712 tacgtttcttccaaattcttttctgttctattgtaaccaatgggcaggttatatattttgtttg 775  Q
    |||||||||||||||||||||| ||||||| ||| | |||| ||||||||||||||||||||||    
T  3604180 tacgtttcttccaaattcttttttgttctactgt-agcaat-ggcaggttatatattttgtttg 3604119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 435 - 546
Target Start/End: Original strand, 39753500 - 39753611
Alignment:
Q  435 tattgaatcaagacttttattgaatctaaataaatcatgtggtattcaatcaagacaattaagactttcttttcaagacatcaaaatccatttgtattca 534  Q
    |||| |||||||||||||||  ||| |||| ||||| |||| ||||||||||||||||| | ||||||  ||||| | || | || |||||| |||||||    
T  39753500 tattcaatcaagacttttataaaatataaaaaaatcttgtgatattcaatcaagacaatcatgacttttatttcagggcaaccaattccattggtattca 39753599  T
Q  535 attaagatttct 546  Q
    | | ||||||||    
T  39753600 actgagatttct 39753611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 444 - 635
Target Start/End: Complemental strand, 40460587 - 40460398
Alignment:
Q  444 aagacttttattgaatctaaataaatcatgtggtattcaatcaagacaattaagactttcttttcaagacatcaaaatccatttgtattcaattaagatt 543  Q
    |||| |||||| |||| |||||||||  |||||||||||||||||||||| |||| ||  |||| | | || || ||| || | |||||||| |||||||    
T  40460587 aagaattttatagaatataaataaatattgtggtattcaatcaagacaatcaaga-ttgtttttaagggcaacagaattcagtagtattcaaataagatt 40460489  T
Q  544 tctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagactttttagtt 635  Q
    | |   ||||||| ||||||||| ||||||| |||| || |    |||||||  |||| |||||||||| |||| || ||||||||||||||    
T  40460488 tttccaaacttat-aaatgtctcttggtattcaaaagtatataagttttaataaattcttttgtgtaatagattttgcgagactttttagtt 40460398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 517 - 634
Target Start/End: Complemental strand, 6828729 - 6828612
Alignment:
Q  517 aaaatccatttgtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggat 616  Q
    |||||||| | |||||||||| ||||||   | |||||| ||| |||||  || |||| ||||||  | |||||||||||||||  | || |||||||||    
T  6828729 aaaatccagtggtattcaattgagattttgcacaacttaaaaattgtctattgatattcaaaattgtaaggattttaatggattgttatgagtaatggat 6828630  T
Q  617 tgtgtgagactttttagt 634  Q
    | ||||||||||||||||    
T  6828629 tttgtgagactttttagt 6828612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 372 - 417
Target Start/End: Complemental strand, 6828877 - 6828832
Alignment:
Q  372 ggggcgtattgaattgagatttcaaaggattttaatagactttttt 417  Q
    |||| ||||| |||||||||||||||||||||||| ||||||||||    
T  6828877 ggggtgtattcaattgagatttcaaaggattttaaaagactttttt 6828832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 372 - 417
Target Start/End: Original strand, 40410589 - 40410634
Alignment:
Q  372 ggggcgtattgaattgagatttcaaaggattttaatagactttttt 417  Q
    |||| |||||| ||||||||||||| ||||||||| ||||||||||    
T  40410589 ggggtgtattggattgagatttcaatggattttaaaagactttttt 40410634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 15 - 360
Target Start/End: Complemental strand, 44194480 - 44194146
Alignment:
Q  15 cgcaaagtaaggaaactagtggtactcctcctcctcctaaatcaagaagtgttgcatttgctgcaaatggtgattgagaaattagaatcaaaccaaggaa 114  Q
    |||||| ||||||||||| |||| ||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  44194480 cgcaaattaaggaaactaatggtcctcctcctcctcctaaaccaagaagtcttgcatttgatgcaaatggtgattgagaaattaggatcaaaccaaggaa 44194381  T
Q  115 catggaacaaattgttaaagaattcannnnnnnnnnnnnnnnnnaattagggttccttggtttgaggaagagtgtgtttggtttcataggtgttggggtg 214  Q
    |||||||||||||||| |||||||||                  ||||||||||||||||||||| |  ||||||||||||||||||||||||||| |||    
T  44194380 catggaacaaattgttgaagaattcattttttta----------aattagggttccttggtttgacgg-gagtgtgtttggtttcataggtgttggagtg 44194292  T
Q  215 ttttatagtaaaggaaattctaatttagggtaattaacatatttttagcaaatcacagcgattgtgatgcttgggaaatggtgatccaataatctagatt 314  Q
    ||||||||||| | ||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||    
T  44194291 ttttatagtaacgaaaattctaatttaggataattaacatatttttagcaaatcatagcgatggtgatgctttggaaatggtgatccaataatctagatt 44194192  T
Q  315 tcccttcaatggggttcgctggaaaattgaacacttgtgtcatttt 360  Q
    || ||||||||||||||||| ||||||||||| |||||||||||||    
T  44194191 tctcttcaatggggttcgctagaaaattgaactcttgtgtcatttt 44194146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 179; E-Value: 4e-96
Query Start/End: Original strand, 39 - 360
Target Start/End: Complemental strand, 44308409 - 44308091
Alignment:
Q  39 ctcctcctcctcctaaatcaagaagtgttgcatttgctgcaaatggtgattgagaaattagaatcaaaccaaggaacatggaacaaattgttaaagaatt 138  Q
    ||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||    
T  44308409 ctcctcctcctcctaaaccaagaactcttgcatttgctgcaaatggtgattgagaaattaggatcaaaccaaggaacagggaacaaattgttgaagaatt 44308310  T
Q  139 cannnnnnnnnnnnnnnnnnaattagggttccttggtttgaggaagagtgtgtttggtttcataggtgttggggtgttttatagtaaaggaaattctaat 238  Q
    ||                  ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  44308309 catatttttttttttta---aattagggttccttggtttgaggaaaagtgtgtttggtttcataggtgttggggtgttttatagtaacggaaattctaat 44308213  T
Q  239 ttagggtaattaacatatttttagcaaatcacagcgattgtgatgcttgggaaatggtgatccaataatctagatttcccttcaatggggttcgctggaa 338  Q
    ||| ||||||||||||||||||||||||||||||| || ||||||||||||||| || |||||||||||||||||||||||||||||  | || || | |    
T  44308212 ttaaggtaattaacatatttttagcaaatcacagcaatggtgatgcttgggaaacggcgatccaataatctagatttcccttcaatgatgctcactcgca 44308113  T
Q  339 aattgaacacttgtgtcatttt 360  Q
    |||||||  |||||||||||||    
T  44308112 aattgaattcttgtgtcatttt 44308091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 15 - 309
Target Start/End: Complemental strand, 44315480 - 44315192
Alignment:
Q  15 cgcaaagtaaggaaactagtggtactcctcctcctcctaaatcaagaagtgttgcatttgctgcaaatggtgattgagaaattagaatcaaaccaaggaa 114  Q
    |||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  44315480 cgcaaattaaggaaactagtggtcctcctcctcctcctaaaccaagaagtgttgcatttgctgcaaatggtgattgagaaattaggatcaaaccaaggaa 44315381  T
Q  115 catggaacaaattgttaaagaattcannnnnnnnnnnnnnnnnnaattagggttccttggtttgaggaagagtgtgtttggtttcataggtgttggggtg 214  Q
    || ||||||||||||| |||||||||                  ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||     
T  44315380 cagggaacaaattgttgaagaattcattttcttttt--------aattaggattccttggtttgaggaagagtgtgtttggtttcataggtgttgaggta 44315289  T
Q  215 ttttatagtaaaggaaa--ttctaatttagggtaattaacatatttttagcaaatcacagcgattgtgatgcttgggaaatggtgatccaataatct 309  Q
    ||||||||||| |||||  ||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||| | || |||||||||||||    
T  44315288 ttttatagtaacggaaaaattctaatttagggtaattaacgtatttttagtaaatcacagcgattgtgatgtttgggatacggcgatccaataatct 44315192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 377 - 693
Target Start/End: Original strand, 39757985 - 39758295
Alignment:
Q  377 gtattgaattgagatttcaaaggattttaatagacttttttatgaaaagaaaatttttt---attgaatcaagacttttattgaatctaaataaatcatg 473  Q
    |||||||||||||||||||||||||||| ||| ||||||| |||| || ||||| || |   |||||||||||||||||||| |||||| ||||||| ||    
T  39757985 gtattgaattgagatttcaaaggattttgatatacttttt-atgataaaaaaatcttgtcgtattgaatcaagacttttattaaatctatataaatcttg 39758083  T
Q  474 tggtattcaatcaagacaattaagactttcttttcaagacatcaaaatccatttgtattcaattaagatttctaagaacttataaaatgtctcgtggtat 573  Q
    ||||||||||| |||||         ||| |||| ||| || | |||||  || ||||||||||||||||||||||||||||||||||||||  ||||||    
T  39758084 tggtattcaattaagact--------tttttttttaaggcagccaaatctgttggtattcaattaagatttctaagaacttataaaatgtcttttggtat 39758175  T
Q  574 tgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagactttttagtt-aaatacactcatccaacaatctcaaacaaactcttta 672  Q
    |||||| ||  | |||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |    
T  39758176 tgaaaa-tatgcagattttaatggattcatttggggaatggattgtgtgagactttttagttgaaatacactcatccaacaatctcacacaaactcttga 39758274  T
Q  673 gattttgtaatactcttccaa 693  Q
    |||| ||| ||||||||||||    
T  39758275 gattgtgtgatactcttccaa 39758295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 377 - 693
Target Start/End: Original strand, 39763339 - 39763649
Alignment:
Q  377 gtattgaattgagatttcaaaggattttaatagacttttttatgaaaagaaaatttttt---attgaatcaagacttttattgaatctaaataaatcatg 473  Q
    |||||||||||||||||||||||||||| ||| ||||||| |||| || ||||| || |   |||||||||||||||||||| |||||| ||||||| ||    
T  39763339 gtattgaattgagatttcaaaggattttgatatacttttt-atgataaaaaaatcttgtcgtattgaatcaagacttttattaaatctatataaatcttg 39763437  T
Q  474 tggtattcaatcaagacaattaagactttcttttcaagacatcaaaatccatttgtattcaattaagatttctaagaacttataaaatgtctcgtggtat 573  Q
    ||||||||||| |||||         ||| |||| ||| || | |||||  || ||||||||||||||||||||||||||||||||||||||  ||||||    
T  39763438 tggtattcaattaagact--------tttttttttaaggcagccaaatctgttggtattcaattaagatttctaagaacttataaaatgtcttttggtat 39763529  T
Q  574 tgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagactttttagtt-aaatacactcatccaacaatctcaaacaaactcttta 672  Q
    |||||| ||  | |||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |    
T  39763530 tgaaaa-tatgcagattttaatggattcatttggggaatggattgtgtgagactttttagttgaaatacactcatccaacaatctcacacaaactcttga 39763628  T
Q  673 gattttgtaatactcttccaa 693  Q
    |||| ||| ||||||||||||    
T  39763629 gattgtgtgatactcttccaa 39763649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 125; E-Value: 7e-64
Query Start/End: Original strand, 15 - 307
Target Start/End: Complemental strand, 44300914 - 44300637
Alignment:
Q  15 cgcaaagtaaggaaactagtggtactcctcctcctcctaaatcaagaagtgttgcatttgctgcaaatggtgattgagaaattagaatcaaaccaaggaa 114  Q
    |||||| ||||||||||| |||| ||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  44300914 cgcaaattaaggaaactaatggtcctcctcctcctcctaaaccaagaagtcttgcatttgatgcaaatggtgattgagaaattaggatcaaaccaaggaa 44300815  T
Q  115 catggaacaaattgttaaagaattcannnnnnnnnnnnnnnnnnaattagggttccttggtttgaggaagagtgtgtttggtttcataggtgttggggtg 214  Q
    |||||||||||||||| |||||||||                  ||||||||||||||||||||| |  ||||||||||||||||||||||||||| |||    
T  44300814 catggaacaaattgttgaagaattca----------tttttttaaattagggttccttggtttgacg-ggagtgtgtttggtttcataggtgttggagtg 44300726  T
Q  215 ttttatagtaaaggaaattctaatttagggtaattaacatatttttagcaaatcacagcgattgtgatgcttgggaaatggtgatccaataat 307  Q
    ||||||||||| ||||||||||||||||||    |||| || ||| |  ||||||||||||||| ||||||||||||| | || |||||||||    
T  44300725 ttttatagtaacggaaattctaatttaggg----taacgtactttcaagaaatcacagcgattgcgatgcttgggaaacgctgctccaataat 44300637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 372 - 679
Target Start/End: Original strand, 48194589 - 48194900
Alignment:
Q  372 ggggcgtattgaattgagatttcaaaggattttaatagacttttttatgaaaagaaaattttt----tattgaatcaagacttttattgaatctaaataa 467  Q
    |||| ||||||||||| |||||||| ||||||||| ||||||||||| |||   |||| | |     |||| |||||||||||||||  |||||||| ||    
T  48194589 ggggtgtattgaattgggatttcaagggattttaaaagactttttta-gaatgaaaaagtctagtggtattcaatcaagacttttataaaatctaaacaa 48194687  T
Q  468 atcatgtggtattcaatcaagacaattaagactttcttttcaagacatcaaaatccatttgtattcaattaagatttctaagaacttataaaatgtctcg 567  Q
    ||| |||||||||||||||||||||| | |||||| |||| ||| || |||||||| || |||||||||| |||||||| |  |||||| || ||||       
T  48194688 atcttgtggtattcaatcaagacaatcatgactttttttttaaggcaacaaaatccgttggtattcaattgagatttctcatgacttatgaattgtccat 48194787  T
Q  568 tggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagactttttagttaaataca-ctcatccaacaatctcaaacaaac 666  Q
    ||||||| |||| |  |  |||||| |||||||| |   || |||||||| |||||||||||||||||||| | | ||| ||||||||||||| | ||||    
T  48194788 tggtattcaaaagtctatagattttgatggattcttggatggaatggattttgtgagactttttagttaaaaatatctcttccaacaatctcacagaaac 48194887  T
Q  667 tctttagattttg 679  Q
     ||| ||||||||    
T  48194888 ccttgagattttg 48194900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 377 - 638
Target Start/End: Complemental strand, 19007659 - 19007396
Alignment:
Q  377 gtattgaattgagatttcaaaggattttaatagacttttttatgaaaagaaaattttt-----tattgaatcaagacttttattgaatctaaataaatca 471  Q
    |||||||||||||||||||| ||||||||| ||||||||||||  || |||||  | |     |||| |||||||||||||||  ||| |||| |||||     
T  19007659 gtattgaattgagatttcaagggattttaaaagacttttttat--aatgaaaaagtctagtggtattcaatcaagacttttataaaatgtaaacaaatct 19007562  T
Q  472 tgtggtattcaatcaagacaattaagactttcttttcaagacatcaaaatccatttgtattcaattaagatttctaagaacttataaaatgtctcgtggt 571  Q
    |||||||||||||||||||||  | |||||| |||| ||| || |||||||| || |||||||||| |||||||| |  |||||| || |||||  ||||    
T  19007561 tgtggtattcaatcaagacaaacatgacttt-tttttaaggcaacaaaatccgttggtattcaattgagatttctcatgacttatgaattgtctattggt 19007463  T
Q  572 attgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagactttttagttaaa 638  Q
    ||| |||| |  |  |||||| |||||||| |   || |||||||| ||||||||||||||||||||    
T  19007462 attaaaaagtctatagattttgatggattcttggatggaatggattttgtgagactttttagttaaa 19007396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 372 - 659
Target Start/End: Original strand, 48203347 - 48203638
Alignment:
Q  372 ggggcgtattgaattgagatttcaaaggattttaatagacttttttatgaaaagaaaattttt----tattgaatcaagacttttattgaatctaaataa 467  Q
    |||| ||||||||||| |||||||| ||||||||| ||||||||||| |||   |||| | |     |||| |||||||||||||||  ||| |||| ||    
T  48203347 ggggtgtattgaattgggatttcaagggattttaaaagactttttta-gaatgaaaaagtctagtggtattcaatcaagacttttataaaatataaacaa 48203445  T
Q  468 atcatgtggtattcaatcaagacaattaagactttcttttcaagacatcaaaatccatttgtattcaattaagatttctaagaacttataaaatgtctcg 567  Q
    ||| |||||||||||||||||||||| | |||||| |||| ||| || |||||||| || |||||||||| |||||||| |  |||||| || ||||       
T  48203446 atcttgtggtattcaatcaagacaatcatgactttttttttaaggcaacaaaatccgttggtattcaattgagatttctcatgacttatgaattgtccat 48203545  T
Q  568 tggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagactttttagttaaataca-ctcatccaacaatctca 659  Q
     |||||| |||| |  |  |||||| |||||||| |   || |||||||| |||||||||||||||||||| | | ||| |||||||||||||    
T  48203546 aggtattcaaaagtctatagattttgatggattcttggatggaatggattttgtgagactttttagttaaaaatatctcttccaacaatctca 48203638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 432 - 638
Target Start/End: Original strand, 4288995 - 4289201
Alignment:
Q  432 ttttattgaatcaagacttttattgaatctaaataaatcatgtggtattcaatcaagacaattaagactttcttttcaagacatcaaaatccatttgtat 531  Q
    ||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||| | |||| | || | |||| |  | ||||    
T  4288995 ttttattcaatcaagacttttatagaatataaataaatcatgtggtattcaatcaagacaatcaagactttttattcagggcaacgaaattcgatggtat 4289094  T
Q  532 tcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagacttttt 631  Q
    |||| | ||| ||      ||||||||||||| |  ||||||| |||| || || ||||||||||||||| ||| || | |||||| ||||||| |||||    
T  4289095 tcaaatgagactttggctgacttataaaatgtttgctggtattcaaaagtatacagattttaatggattcttttatggagtggattttgtgagaattttt 4289194  T
Q  632 agttaaa 638  Q
    || ||||    
T  4289195 agctaaa 4289201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 444 - 688
Target Start/End: Original strand, 43553610 - 43553853
Alignment:
Q  444 aagacttttattgaatctaaataaatcatgtggtattcaatcaagacaattaagactttcttttcaagacatcaaaatccatttgtattcaattaagatt 543  Q
    |||||||||||  ||| |||||||||| ||| ||||||||| | |||||| ||||||| | ||| |||  |  ||||||| || | |||||||| |||||    
T  43553610 aagacttttataaaatttaaataaatcttgttgtattcaattacgacaatcaagactt-catttgaaggtaataaaatccgttagcattcaattgagatt 43553708  T
Q  544 tctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagactttttagttaaa-taca 642  Q
    ||| | |||||||||| |||||| ||||||| |||| || |   ||||||||  |||| || ||| |||||||| | ||| | |||||||||||| ||||    
T  43553709 tctcacaacttataaattgtctcttggtattaaaaaatacataaattttaataaattctttggtgaaatggattttttgaaa-tttttagttaaaataca 43553807  T
Q  643 ctcatccaacaatctcaaacaaactctttagattttgtaatactct 688  Q
     |||||||||||||||  |||||  ||| ||||||||  |||||||    
T  43553808 ttcatccaacaatctctcacaaaaccttgagattttgacatactct 43553853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 712 - 847
Target Start/End: Original strand, 45318840 - 45318974
Alignment:
Q  712 tacgtttcttccaaattcttttctgttctattgtaaccaatgggcaggttatatattttgtttgg-----ttattgtccaaaatcatcatacctctaacc 806  Q
    ||||||||||||||||||||||||||| || ||||| |||| |||||||||||||||||||||||     ||||||| | |||||||||| ||||||| |    
T  45318840 tacgtttcttccaaattcttttctgttatactgtaa-caat-ggcaggttatatattttgtttggcaaacttattgt-cgaaatcatcatgcctctaa-c 45318935  T
Q  807 ttgccacttttctaaccataacttttacctttcattaaaaa 847  Q
    ||| ||||||||| | ||||||||||| | |||||||||||    
T  45318936 ttg-cacttttcttaacataactttta-cgttcattaaaaa 45318974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 712 - 870
Target Start/End: Original strand, 45535130 - 45535287
Alignment:
Q  712 tacgtttcttccaaattcttttctgttctattgtaaccaatgggcaggttatatattttgtttgg-----ttattgtccaaaatcatcatacctctaacc 806  Q
    ||||||||||||||||||||||||||| |||||||| |||| |||| | ||||||||||||||||     ||||||| | |||||||||| ||||||| |    
T  45535130 tacgtttcttccaaattcttttctgttttattgtaa-caat-ggcaagatatatattttgtttggcaaatttattgt-cgaaatcatcatgcctctaa-c 45535225  T
Q  807 ttgccacttttctaaccataacttttacctttcattaaaaacaaaaacgaacgtactggataat 870  Q
    |||  |||||||| | |||||| |||| | ||||||||||| ||||| |||||||||| |||||    
T  45535226 ttg-tacttttcttaacataacattta-cgttcattaaaaaaaaaaaagaacgtactgtataat 45535287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 435 - 638
Target Start/End: Original strand, 27198336 - 27198539
Alignment:
Q  435 tattgaatcaagacttttattgaatctaaataaatcatgtggtattcaatcaagacaattaagactttcttttcaagacatcaaaatccatttgtattca 534  Q
    |||| |||||| ||||||||  ||| |||||||||| ||||||||||||| |||||||| | || | | ||||||   || | |||||| || ||||| |    
T  27198336 tattcaatcaaaacttttataaaatataaataaatcttgtggtattcaattaagacaatcatgattcttttttcagcgcaacgaaatccgttggtattga 27198435  T
Q  535 attaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagactttttagt 634  Q
    ||| |||||||| |  |||| |||||||||   ||||||| |||| || |  ||||||||||||||| ||| |  | | |||| |||||||||| |||||    
T  27198436 attgagatttctcattacttctaaaatgtccattggtattcaaaaatatatagattttaatggattcttttatagagttgattttgtgagacttcttagt 27198535  T
Q  635 taaa 638  Q
    ||||    
T  27198536 taaa 27198539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 369 - 634
Target Start/End: Complemental strand, 1928492 - 1928224
Alignment:
Q  369 ttaggggcgtattgaattgagatttcaaaggattttaatagacttttttatgaaaagaaaattttt---tattgaatcaagacttttattgaatctaaat 465  Q
    ||||||| ||||| ||||||||||| |||||||||||| |||||||||| |   || ||| | |||   |||| ||||||||||||||  |||||||||     
T  1928492 ttaggggtgtattcaattgagattttaaaggattttaaaagacttttttgttttaaaaaagtctttaggtattcaatcaagacttttaaggaatctaaaa 1928393  T
Q  466 aaatcatgtggtattcaatcaagacaattaagactttcttttcaagacatcaaaatccatttgtattcaattaagatttctaagaacttataaaatgtct 565  Q
     | || ||||||||||||| | ||   | |||| ||| |  | |   ||  |||||||| | |||||||||| ||||||   | |||||| ||| |||||    
T  1928392 cattcttgtggtattcaattaggattttcaagattttttaatgagtccaataaaatccagtggtattcaattcagattttgcacaacttaaaaattgtct 1928293  T
Q  566 cgtggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagactttttagt 634  Q
      ||||||| ||||||  | |||||||||||||||  | || |||||||||| ||||||||||||||||    
T  1928292 attggtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtgagactttttagt 1928224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 517 - 634
Target Start/End: Original strand, 36402394 - 36402511
Alignment:
Q  517 aaaatccatttgtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggat 616  Q
    |||||||| | |||||||||| ||||||   | |||||| ||| |||||  ||||||| ||||||  | |||||||||||||||  | || |||||||||    
T  36402394 aaaatccagtggtattcaattgagattttgcacaacttaaaaattgtctattggtattcaaaattgtaaggattttaatggattgttgtgagtaatggat 36402493  T
Q  617 tgtgtgagactttttagt 634  Q
    | ||||||||||||||||    
T  36402494 tttgtgagactttttagt 36402511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 369 - 484
Target Start/End: Original strand, 10896796 - 10896914
Alignment:
Q  369 ttaggggcgtattgaattgagatttcaaaggattttaatagacttttttatgaaaagaaaattttt---tattgaatcaagacttttattgaatctaaat 465  Q
    ||||||| ||||| |||||||||||||||||||||||| ||| ||||||||   || ||| | |||   |||| ||||||||||||||  |||||||||     
T  10896796 ttaggggtgtattcaattgagatttcaaaggattttaaaagatttttttattttaaaaaagtctttaggtattcaatcaagacttttaaggaatctaaaa 10896895  T
Q  466 aaatcatgtggtattcaat 484  Q
     | || |||||||||||||    
T  10896896 cattcttgtggtattcaat 10896914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 716 - 847
Target Start/End: Complemental strand, 26882530 - 26882400
Alignment:
Q  716 tttcttccaaattcttttctgttctattgtaaccaatgggcaggttatatattttgtttg-----gttattgtccaaaatcatcatacctctaaccttgc 810  Q
    |||||||||||||||||||||||||| | ||| |||| ||||||||||||||||||||||      ||||||| | |||||||||| ||||||| ||||     
T  26882530 tttcttccaaattcttttctgttctactataa-caat-ggcaggttatatattttgtttgacaaacttattgt-cgaaatcatcatgcctctaa-cttg- 26882436  T
Q  811 cacttttctaaccataacttttacctttcattaaaaa 847  Q
    ||||||||| | ||||||||||| | |||||||||||    
T  26882435 cacttttcttaacataactttta-cgttcattaaaaa 26882400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 712 - 847
Target Start/End: Original strand, 52705764 - 52705898
Alignment:
Q  712 tacgtttcttccaaattcttttctgttctattgtaaccaatgggcaggttatatattttgtttg-----gttattgtccaaaatcatcatacctctaacc 806  Q
    ||||||||||||||||||||||||||| || ||||| |||| ||||| ||||||||||||||||      ||||||| | |||||||||| ||||||| |    
T  52705764 tacgtttcttccaaattcttttctgttatactgtaa-caat-ggcagattatatattttgtttgacaaacttattgt-cgaaatcatcatgcctctaa-c 52705859  T
Q  807 ttgccacttttctaaccataacttttacctttcattaaaaa 847  Q
    ||| ||||||||| | ||||||||||| | |||||||||||    
T  52705860 ttg-cacttttcttaacataactttta-cgttcattaaaaa 52705898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 377 - 579
Target Start/End: Complemental strand, 14555391 - 14555186
Alignment:
Q  377 gtattgaattgagatttcaaaggattttaatagacttttttatgaaaagaaaatttttt---attgaatcaagacttttattgaatctaaataaatcatg 473  Q
    |||||| ||||  |||| |||||||||||| |||||||||||| | || ||| |||  |   ||| |||||||||||||||  ||| |||| |||   ||    
T  14555391 gtattggattgtaatttaaaaggattttaaaagacttttttataataaaaaagtttggtggtattcaatcaagacttttataaaatataaaaaaaatttg 14555292  T
Q  474 tggtattcaatcaagacaattaagactttcttttcaagacatcaaaatccatttgtattcaattaagatttctaagaacttataaaatgtctcgtggtat 573  Q
    ||||||||||| |||||||| | ||||||  ||||| |||| | || ||| ||  ||||||||| |||||||| |  |||| |||| |||||| ||||||    
T  14555291 tggtattcaattaagacaatcatgacttttatttcaggacaaccaattccgttgatattcaattgagatttctcatgacttgtaaattgtctcttggtat 14555192  T
Q  574 tgaaaa 579  Q
    | ||||    
T  14555191 tcaaaa 14555186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 372 - 417
Target Start/End: Complemental strand, 26882911 - 26882866
Alignment:
Q  372 ggggcgtattgaattgagatttcaaaggattttaatagactttttt 417  Q
    |||| |||||| ||||||||||||||||||||||| ||||||||||    
T  26882911 ggggtgtattggattgagatttcaaaggattttaaaagactttttt 26882866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 372 - 417
Target Start/End: Original strand, 36402246 - 36402291
Alignment:
Q  372 ggggcgtattgaattgagatttcaaaggattttaatagactttttt 417  Q
    |||| ||||| |||||||||||||||||||||||| ||||||||||    
T  36402246 ggggtgtattcaattgagatttcaaaggattttaaaagactttttt 36402291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 372 - 417
Target Start/End: Original strand, 45318459 - 45318504
Alignment:
Q  372 ggggcgtattgaattgagatttcaaaggattttaatagactttttt 417  Q
    |||| |||||| ||||||||||||||||||||||| ||||||||||    
T  45318459 ggggtgtattggattgagatttcaaaggattttaaaagactttttt 45318504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 377 - 417
Target Start/End: Original strand, 9831303 - 9831343
Alignment:
Q  377 gtattgaattgagatttcaaaggattttaatagactttttt 417  Q
    ||||| |||||||||||||||||||||||| ||||||||||    
T  9831303 gtattcaattgagatttcaaaggattttaaaagactttttt 9831343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 377 - 417
Target Start/End: Original strand, 29208759 - 29208799
Alignment:
Q  377 gtattgaattgagatttcaaaggattttaatagactttttt 417  Q
    ||||| |||||||||||||||||||||||| ||||||||||    
T  29208759 gtattcaattgagatttcaaaggattttaaaagactttttt 29208799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 377 - 632
Target Start/End: Complemental strand, 33243390 - 33243132
Alignment:
Q  377 gtattgaattgagatttcaaaggattttaatagacttttttatgaaaagaaaattttt---tattgaatcaagacttttattgaatctaaataaatcatg 473  Q
    ||||| |||||| |||||||| |||||||| |||||||||| |   || ||| |||||   |||| ||||||||||||||  |||||||||  | || ||    
T  33243390 gtattcaattgaaatttcaaaagattttaaaagacttttttgttttaaaaaagtttttaggtattcaatcaagacttttaaggaatctaaaatattcttg 33243291  T
Q  474 tggtattcaatcaagacaattaagactttcttttcaagacatcaaaatccatttgtattcaattaagatttctaagaacttataaaatgtctcgtggtat 573  Q
    ||||||||||| | ||   | |||| ||| |  | |  |||  |||||||| | |||||||||| ||||||   | |||||| ||| |||||  ||||||    
T  33243290 tggtattcaattaggattttcaagattttttaatgagtacaataaaatccagtggtattcaattgagattttgtacaacttaaaaattgtctattggtat 33243191  T
Q  574 tgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagacttttta 632  Q
    | ||||||  | |||||||||||||||  | || |||||||||| ||||| ||||||||    
T  33243190 tcaaaattgtaaggattttaatggattgttgtgagtaatggattttgtgaaacttttta 33243132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 377 - 632
Target Start/End: Complemental strand, 33263563 - 33263305
Alignment:
Q  377 gtattgaattgagatttcaaaggattttaatagacttttttatgaaaagaaaattttt---tattgaatcaagacttttattgaatctaaataaatcatg 473  Q
    ||||| |||||| |||||||| |||||||| |||||||||| |   || ||| |||||   |||| ||||||||||||||  |||||||||  | || ||    
T  33263563 gtattcaattgaaatttcaaaagattttaaaagacttttttgttttaaaaaagtttttaggtattcaatcaagacttttaaggaatctaaaatattcttg 33263464  T
Q  474 tggtattcaatcaagacaattaagactttcttttcaagacatcaaaatccatttgtattcaattaagatttctaagaacttataaaatgtctcgtggtat 573  Q
    ||||||||||| | ||   | |||| ||| |  | |  |||  |||||||| | |||||||||| ||||||   | |||||| ||| |||||  ||||||    
T  33263463 tggtattcaattaggattttcaagattttttaatgagtacaataaaatccagtggtattcaattgagattttgtacaacttaaaaattgtctattggtat 33263364  T
Q  574 tgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagacttttta 632  Q
    | ||||||  | |||||||||||||||  | || |||||||||| ||||| ||||||||    
T  33263363 tcaaaattgtaaggattttaatggattgttgtgagtaatggattttgtgaaacttttta 33263305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 528 - 634
Target Start/End: Original strand, 29208913 - 29209019
Alignment:
Q  528 gtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagact 627  Q
    |||||||||| ||||||   | |||||| ||| |||||  ||||||| ||| ||  | |||||||||||||||  | || |||||||||| |||||||||    
T  29208913 gtattcaattgagattttacacaacttaaaaattgtctattggtattcaaagttctaaggattttaatggattgttgtgagtaatggattttgtgagact 29209012  T
Q  628 ttttagt 634  Q
    |||||||    
T  29209013 ttttagt 29209019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 435 - 493
Target Start/End: Complemental strand, 52179710 - 52179652
Alignment:
Q  435 tattgaatcaagacttttattgaatctaaataaatcatgtggtattcaatcaagacaat 493  Q
    |||| ||| |||||||||||  ||| |||||||||| ||||||||||||| ||||||||    
T  52179710 tattcaataaagacttttataaaatataaataaatcttgtggtattcaattaagacaat 52179652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 377 - 418
Target Start/End: Original strand, 34772315 - 34772356
Alignment:
Q  377 gtattgaattgagatttcaaaggattttaatagactttttta 418  Q
    |||||| |||| |||||||||||||||||| |||||||||||    
T  34772315 gtattggattgtgatttcaaaggattttaaaagactttttta 34772356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 3e-32; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 372 - 679
Target Start/End: Original strand, 7100163 - 7100474
Alignment:
Q  372 ggggcgtattgaattgagatttcaaaggattttaatagacttttttatgaaaagaaaattttt----tattgaatcaagacttttattgaatctaaataa 467  Q
    |||| ||||||||||| |||||||| ||||||||| ||||||||||| |||   |||| | |     |||| |||||||||||||||  |||||||| ||    
T  7100163 ggggtgtattgaattgggatttcaagggattttaaaagactttttta-gaatgaaaaagtctagtggtattcaatcaagacttttataaaatctaaacaa 7100261  T
Q  468 atcatgtggtattcaatcaagacaattaagactttcttttcaagacatcaaaatccatttgtattcaattaagatttctaagaacttataaaatgtctcg 567  Q
    ||| |||||||||||||||||||||| | |||||| |||| ||| || |||||||| || |||||||||| |||||||| |  |||||| || ||||       
T  7100262 atcttgtggtattcaatcaagacaatcatgactttttttttaaggcaacaaaatccgttggtattcaattgagatttctcatgacttatgaattgtccat 7100361  T
Q  568 tggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagactttttagttaaataca-ctcatccaacaatctcaaacaaac 666  Q
    ||||||| |||| |  |  |||||| |||||||| |   || |||||||| |||||||||||||||||||| | | ||| ||||||||||||| | ||||    
T  7100362 tggtattcaaaagtctatagattttgatggattcttggatggaatggattttgtgagactttttagttaaaaatatctcttccaacaatctcacagaaac 7100461  T
Q  667 tctttagattttg 679  Q
     ||| ||||||||    
T  7100462 ccttgagattttg 7100474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 372 - 679
Target Start/End: Complemental strand, 8794467 - 8794156
Alignment:
Q  372 ggggcgtattgaattgagatttcaaaggattttaatagacttttttatgaaaagaaaattttt----tattgaatcaagacttttattgaatctaaataa 467  Q
    |||| ||||||||||| |||||||| ||||||||| ||||||||||| |||   |||| | |     |||| |||||||||||||||  |||||||| ||    
T  8794467 ggggtgtattgaattgggatttcaagggattttaaaagactttttta-gaatgaaaaagtctagtggtattcaatcaagacttttataaaatctaaacaa 8794369  T
Q  468 atcatgtggtattcaatcaagacaattaagactttcttttcaagacatcaaaatccatttgtattcaattaagatttctaagaacttataaaatgtctcg 567  Q
    ||| |||||||||||||||||||||| | |||||| |||| ||| || |||||||| || |||||||||| |||||||| |  |||||| || ||||       
T  8794368 atcttgtggtattcaatcaagacaatcatgactttttttttaaggcaacaaaatccgttggtattcaattgagatttctcatgacttatgaattgtccat 8794269  T
Q  568 tggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagactttttagttaaataca-ctcatccaacaatctcaaacaaac 666  Q
    ||||||| |||| |  |  |||||| |||||||| |   || |||||||| |||||||||||||||||||| | | ||| ||||||||||||| | ||||    
T  8794268 tggtattcaaaagtctatagattttgatggattcttggatggaatggattttgtgagactttttagttaaaaatatctcttccaacaatctcacagaaac 8794169  T
Q  667 tctttagattttg 679  Q
     ||| ||||||||    
T  8794168 ccttgagattttg 8794156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 372 - 638
Target Start/End: Original strand, 5957125 - 5957397
Alignment:
Q  372 ggggcgtattgaattgagatttcaaaggattttaatagacttttttatgaaaagaaaatttttt---attgaatcaagacttttattgaatctaaataaa 468  Q
    |||| |||||||||||||| ||||| ||||||||| |||||||||||| | || ||| | |  |   ||| |||||||||||||||  ||| |||| |||    
T  5957125 ggggtgtattgaattgagaattcaagggattttaaaagacttttttataataaaaaagtctagtggtattcaatcaagacttttataaaatgtaaacaaa 5957224  T
Q  469 tcatgtggtattcaatcaagacaattaagac---tttcttttcaagacatcaaaatccatttgtattcaattaagatttctaagaacttataaaatgtct 565  Q
    || ||||||||||||| |||||||| | |||   ||| |||| ||| || |||||||| || ||||||||||||||||||| |  |||||| || |||||    
T  5957225 tcttgtggtattcaattaagacaatcatgacttttttttttttaaggcaacaaaatccgttggtattcaattaagatttctcatgacttatgaattgtct 5957324  T
Q  566 cgtggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagactttttagttaaa 638  Q
      ||||||| |||| |  |  |||||||||  |||  || || ||||||||| ||||||||||||||||||||    
T  5957325 attggtattcaaaagtctatagattttaatatattttttcgtataatggattttgtgagactttttagttaaa 5957397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 435 - 638
Target Start/End: Original strand, 708980 - 709182
Alignment:
Q  435 tattgaatcaagacttttattgaatctaaataaatcatgtggtattcaatcaagacaattaagactttcttttcaagacatcaaaatccatttgtattca 534  Q
    |||| |||||| ||||||||  ||| |||||||||| |||||||||||||||||||||| | |||||| ||||  || || |||||||| || |||||||    
T  708980 tattcaatcaaaacttttataaaatgtaaataaatcttgtggtattcaatcaagacaatcatgacttt-tttttgaggcaacaaaatccgttggtattca 709078  T
Q  535 attaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagactttttagt 634  Q
    ||| | |||||| |  |||||| || |||||  ||||||| |||| |  |  |||||| |||||||| |   ||||||||||| ||||||||||||||||    
T  709079 attgaaatttctcatgacttatgaattgtctattggtattcaaaagtctatagattttgatggattcttggatgtaatggattttgtgagactttttagt 709178  T
Q  635 taaa 638  Q
    ||||    
T  709179 taaa 709182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 712 - 776
Target Start/End: Complemental strand, 29865460 - 29865398
Alignment:
Q  712 tacgtttcttccaaattcttttctgttctattgtaaccaatgggcaggttatatattttgtttgg 776  Q
    |||||||||||||||||||||||||||||| ||||| |||| |||||| ||||||||||||||||    
T  29865460 tacgtttcttccaaattcttttctgttctactgtaa-caat-ggcaggatatatattttgtttgg 29865398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 440 - 493
Target Start/End: Original strand, 4653368 - 4653421
Alignment:
Q  440 aatcaagacttttattgaatctaaataaatcatgtggtattcaatcaagacaat 493  Q
    |||||||||||||||  ||| |||||||||| ||||||||||||| ||||||||    
T  4653368 aatcaagacttttataaaatgtaaataaatcttgtggtattcaattaagacaat 4653421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 440 - 489
Target Start/End: Complemental strand, 10009652 - 10009603
Alignment:
Q  440 aatcaagacttttattgaatctaaataaatcatgtggtattcaatcaaga 489  Q
    |||||||| |||||| |||| |||||||||| ||||||||||||||||||    
T  10009652 aatcaagatttttatagaatataaataaatcttgtggtattcaatcaaga 10009603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 372 - 417
Target Start/End: Original strand, 30877851 - 30877896
Alignment:
Q  372 ggggcgtattgaattgagatttcaaaggattttaatagactttttt 417  Q
    |||| ||||| |||||||||||||||||||||||| ||||||||||    
T  30877851 ggggtgtattcaattgagatttcaaaggattttaaaagactttttt 30877896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 712 - 748
Target Start/End: Complemental strand, 6476422 - 6476386
Alignment:
Q  712 tacgtttcttccaaattcttttctgttctattgtaac 748  Q
    |||||||||||||||||||||||||||||| ||||||    
T  6476422 tacgtttcttccaaattcttttctgttctactgtaac 6476386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 568 - 634
Target Start/End: Original strand, 30878050 - 30878116
Alignment:
Q  568 tggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagactttttagt 634  Q
    ||||||| ||||||  | |||||||||||||||  | || |||||||||| ||||||||||||||||    
T  30878050 tggtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtgagactttttagt 30878116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 58; Significance: 6e-24; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 461 - 638
Target Start/End: Complemental strand, 1878 - 1701
Alignment:
Q  461 taaataaatcatgtggtattcaatcaagacaattaagactttcttttcaagacatcaaaatccatttgtattcaattaagatttctaagaacttataaaa 560  Q
    |||||||||| | | |||||||||||||||||| || ||||| | || | | || | ||||||  | ||||||||||||||||| ||  |||||||||||    
T  1878 taaataaatcttatagtattcaatcaagacaatcaaaactttttattgagggcaaccaaatcccatggtattcaattaagatttgtaccaacttataaaa 1779  T
Q  561 tgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagactttttagttaaa 638  Q
    |||||  ||||||| |||| |   | ||||||||||||||| |||||  |||||||| ||||||||||||||||||||    
T  1778 tgtctattggtattcaaaaatctgcagattttaatggattcttttgtagaatggattttgtgagactttttagttaaa 1701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 46; Significance: 9e-17; HSPs: 1)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 715 - 847
Target Start/End: Complemental strand, 34522 - 34391
Alignment:
Q  715 gtttcttccaaattcttttctgttctattgtaaccaatgggcaggttatatattttgtttgg-----ttattgtccaaaatcatcatacctctaaccttg 809  Q
    |||||||| |||||||||||||||||| ||||| |||| |||||||||||||||||||||||     ||||||| |||||||||||| ||||||| ||||    
T  34522 gtttcttctaaattcttttctgttctactgtaa-caat-ggcaggttatatattttgtttggcaaacttattgt-caaaatcatcatgcctctaa-cttg 34427  T
Q  810 ccacttttctaaccataacttttacctttcattaaaaa 847  Q
     ||||||||| | ||||||||||| | |||||||||||    
T  34426 -cacttttcttaacataactttta-cgttcattaaaaa 34391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 46; Significance: 9e-17; HSPs: 3)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 715 - 847
Target Start/End: Complemental strand, 81490 - 81359
Alignment:
Q  715 gtttcttccaaattcttttctgttctattgtaaccaatgggcaggttatatattttgtttgg-----ttattgtccaaaatcatcatacctctaaccttg 809  Q
    |||||||| |||||||||||||||||| ||||| |||| |||||||||||||||||||||||     ||||||| |||||||||||| ||||||| ||||    
T  81490 gtttcttctaaattcttttctgttctactgtaa-caat-ggcaggttatatattttgtttggcaaacttattgt-caaaatcatcatgcctctaa-cttg 81395  T
Q  810 ccacttttctaaccataacttttacctttcattaaaaa 847  Q
     ||||||||| | ||||||||||| | |||||||||||    
T  81394 -cacttttcttaacataactttta-cgttcattaaaaa 81359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 518 - 634
Target Start/End: Complemental strand, 81718 - 81602
Alignment:
Q  518 aaatccatttgtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggatt 617  Q
    ||||||| | |||||||||| ||||||   | |||||| ||| |||||| ||||||| |||| |  |||||||||||||||||  | || ||||||||||    
T  81718 aaatccagtggtattcaattgagattttgcataacttaaaaattgtctcctggtattcaaaactctacggattttaatggattgttgtgagtaatggatt 81619  T
Q  618 gtgtgagactttttagt 634  Q
     ||||||| | ||||||    
T  81618 ttgtgagattgtttagt 81602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 372 - 417
Target Start/End: Complemental strand, 81867 - 81822
Alignment:
Q  372 ggggcgtattgaattgagatttcaaaggattttaatagactttttt 417  Q
    |||| |||||| |||||||||| |||||||||||| ||||||||||    
T  81867 ggggtgtattggattgagattttaaaggattttaaaagactttttt 81822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0287 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0287
Description:

Target: scaffold0287; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 519 - 638
Target Start/End: Complemental strand, 11732 - 11613
Alignment:
Q  519 aatccatttgtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggattg 618  Q
    ||||| || ||||||||||||||||||| | |||||||||||||| |  ||||||| |||| |  |  |||||| |||||||| ||| || ||||||||     
T  11732 aatccgttggtattcaattaagatttctcacaacttataaaatgtattttggtattcaaaaattaattgattttgatggattcttttatggaatggattt 11633  T
Q  619 tgtgagactttttagttaaa 638  Q
    || |||||||||||||||||    
T  11632 tgagagactttttagttaaa 11613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 712 - 776
Target Start/End: Complemental strand, 21155 - 21093
Alignment:
Q  712 tacgtttcttccaaattcttttctgttctattgtaaccaatgggcaggttatatattttgtttgg 776  Q
    |||||||||||||||||||||||||||||| ||||| |||| |||||| ||||||||||||||||    
T  21155 tacgtttcttccaaattcttttctgttctactgtaa-caat-ggcaggatatatattttgtttgg 21093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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